Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0011861

Physical Location & Seq

Genomic Coordinates Reverse (-)

52727504 .. 52728102

Gene Structure 599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG397200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAATCTTCCCCTCTCTCTGCTCTAAGCAATGAACTGGAGCCAAACAGCAGTAAACAGTTGGTGGAGTGTCCTTCAGAGGTTGACCCTATTGCCAATGAGTTGGTGGAGTCTCTTCCACAATTTGACCCCATTGCCGATGAGAACAATGAAACACTATCAGCCGAAAAAGGCGGTCAATCGGAGGTAGGTGAAGTGATGATAACACCCAAGCAGAAGAGGGGGGCCAGGAGACATAGGAAGTACGAGGTCAATGAAGAAACGGTCTCTACCTTTCCGGCGCCTTCCAACTCGGGGGGCTCTTCCAAGAAAGCAAAAGGCCGCCCCAAAGGATCAGGCAATAAATTGCAGTGGTTCGTTGTCAATGGGTTTGGTGTCAAGATATGTGGCTTCTCCATGGTAGGAATAGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

14.88

Weight (kDa)

5.29

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0011861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45850 AT2G45850 AT2G45850
fragaria_vesca	FvH4_3g30120
prunus_persica	Prupe.6G117900_v2.0.a1
rosa_laevigata	RLG00000013182 RLG00000034994 RLG00000034998
rosa_multiflora	Rmu_sc0003071.1_g000021 Rmu_sc0003989.1_g000016
rosa_roxburghii	Rroxscaffold_1G00024700 Rroxscaffold_1G00024710
rosa_rugosa	Rorug05G0293500
rosa_samantha	Rh5AG363500 Rh5BG375500 Rh5CG397200 Rh5CG397600 Rh5DG388700
rosa_wichuraiana	Rw5G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AciI	CCGC	2 cut(s)	174, 322
AclWI	GGATC	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	281
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	227
Alw26I	GTCTC	3 cut(s)	117, 226, 271
AlwI	GGATC	1 cut(s)	340
Ama87I	CYCGRG	1 cut(s)	292
AoxI	GGCC	2 cut(s)	225, 319
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	229
BcoDI	GTCTC	3 cut(s)	117, 226, 271
BfoI	RGCGCY	1 cut(s)	284
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
Bme1390I	CCNGG	1 cut(s)	229
BmeT110I	CYCGRG	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	3 cut(s)	42, 226, 282
BmrFI	CCNGG	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	42
Bse3DI	GCAATG	2 cut(s)	37, 132
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	2 cut(s)	37, 132
BseNI	ACTGG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	227, 321
BshNI	GGYRCC	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	3 cut(s)	117, 226, 271
BsnI	GGCC	2 cut(s)	227, 321
Bso31I	GGTCTC	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	332
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	2 cut(s)	174, 322
BspANI	GGCC	2 cut(s)	227, 321
BspLI	GGNNCC	3 cut(s)	42, 226, 282
BspPI	GGATC	1 cut(s)	340
BspQI	GCTCTTC	1 cut(s)	307
BspT107I	GGYRCC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	271
BsrDI	GCAATG	2 cut(s)	37, 132
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	1 cut(s)	332
BssNI	GRCGYC	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	60, 265
Bst6I	CTCTTC	3 cut(s)	120, 212, 307
BstACI	GRCGYC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	396
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	1 cut(s)	335
BstMAI	GTCTC	3 cut(s)	117, 226, 271
BstMBI	GATC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	227, 321
BtgI	CCRYGG	1 cut(s)	396
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	356
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	244
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	1 cut(s)	397
CviJI	RGCY	6 cut(s)	43, 164, 227, 300, 321, 390
CviKI_1	RGCY	6 cut(s)	43, 164, 227, 300, 321, 390
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	26
DinI	GGCGCC	1 cut(s)	282
DpnI	GATC	1 cut(s)	334
DpnII	GATC	1 cut(s)	332
Eam1104I	CTCTTC	3 cut(s)	120, 212, 307
EarI	CTCTTC	3 cut(s)	120, 212, 307
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	302
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	1 cut(s)	400
FaiI	YATR	3 cut(s)	237, 385, 398
FatI	CATG	1 cut(s)	396
Fnu4HI	GCNGC	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	322
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	322
GsuI	CTGGAG	1 cut(s)	59
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	227, 321
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	1 cut(s)	283
Hin1I	GRCGYC	1 cut(s)	281
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	5, 110
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	2 cut(s)	56, 85
Hpy188I	TCNGA	2 cut(s)	79, 184
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	2 cut(s)	56, 85
HpyAV	CCTTC	2 cut(s)	84, 294
HpyCH4III	ACNGT	2 cut(s)	60, 265
HpyCH4V	TGCA	1 cut(s)	349
HpyF3I	CTNAG	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	281
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	1 cut(s)	281
KasI	GGCGCC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	332
LguI	GCTCTTC	1 cut(s)	307
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	23, 214, 241, 291, 321
MalI	GATC	1 cut(s)	334
MboI	GATC	1 cut(s)	332
MboII	GAAGA	4 cut(s)	107, 229, 269, 294
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	2 cut(s)	122, 344
Mly113I	GGCGCC	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	5 cut(s)	24, 73, 178, 213, 241
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
NarI	GGCGCC	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	1 cut(s)	332
NlaIII	CATG	1 cut(s)	400
NlaIV	GGNNCC	3 cut(s)	42, 226, 282
PciSI	GCTCTTC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	323
PleI	GAGTC	1 cut(s)	118
PluTI	GGCGCC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	3 cut(s)	42, 226, 282
PspPI	GGNCC	1 cut(s)	225
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SapI	GCTCTTC	1 cut(s)	307
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	1 cut(s)	332
Sau96I	GGNCC	1 cut(s)	225
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	5 cut(s)	84, 189, 193, 252, 275
SfoI	GGCGCC	1 cut(s)	282
Sse9I	AATT	2 cut(s)	122, 344
SsiI	CCGC	2 cut(s)	174, 322
SspDI	GGCGCC	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	2 cut(s)	60, 265
TasI	AATT	2 cut(s)	122, 344
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	1 cut(s)	356
TspDTI	ATGAA	3 cut(s)	48, 165, 270
TspRI	CASTG	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.