Rroxscaffold_1G00024700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011861
Physical Location & Seq
Forward (+)
30716872 .. 30717556
685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024700.1

Sequence Viewer

Length: 501 bp
ATGGAATCTCCCCCTATCTCTCCCTTAAGCAGTGAACCGGAGCCAAACAACAGTAAACAGTTGGTGGAGTGTCTTCCACAGTCTGACCTTATCACCAATGAGTTGGTGGAGTTTCCTCCACCGTCTGACCCCATCGCCGATGAGTTGGTGGAGTCTTCTCTGCAGTCTGATCCCATTGCCAATGAGTTGTTGGAGTCTCCTCCACAGTCTGAGTCTGACCCCATCGCCGATGAGAACAATGAAGCACTATCAGCTGAAGAAAGCGGTCAATCGGAGGCAGGTGAAGTGATGATGACACCTAAGAAGAAGAGGGGAGACCCAGGAATTACGAGGTTAATGAAGAAATGGTCTCTGATGTTCCGGCTTCCAACTCGGAGGGCTCCTCTAAGAAAGCAAAAGGCCACCCGAGAGGCCCAGGCAATAAATTGCAACGCCCCGCTGCCGATGGGTTTGGTGTCAAGATATGTGCGTGGCTTTTCCATGGTAGGAATAGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.24

Weight (kDa)

4.64

Isoelectric Point (pI)

73.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
Acc36I ACCTGC 1 cut(s) 269
AciI CCGC 2 cut(s) 264, 437
AclWI GGATC 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 276
AflII CTTAAG 1 cut(s) 25
AjnI CCWGG 2 cut(s) 319, 414
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw26I GTCTC 3 cut(s) 201, 309, 354
AlwI GGATC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 405
AoxI GGCC 2 cut(s) 399, 411
ApeKI GCWGC 1 cut(s) 439
AspS9I GGNCC 1 cut(s) 412
AsuHPI GGTGA 2 cut(s) 85, 293
AvaI CYCGRG 1 cut(s) 405
BanII GRGCYC 1 cut(s) 382
BbsI GAAGAC 2 cut(s) 65, 147
BbvI GCAGC 1 cut(s) 426
BccI CCATC 3 cut(s) 140, 230, 439
BciT130I CCWGG 2 cut(s) 321, 416
BcoDI GTCTC 3 cut(s) 201, 309, 354
BfmI CTRYAG 1 cut(s) 161
BfrI CTTAAG 1 cut(s) 25
BfuAI ACCTGC 1 cut(s) 269
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
Bme1390I CCNGG 2 cut(s) 321, 416
BmeT110I CYCGRG 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 412
BmiI GGNNCC 2 cut(s) 42, 381
BmrFI CCNGG 2 cut(s) 321, 416
BpiI GAAGAC 2 cut(s) 65, 147
BplI GAGNNNNNCTC 2 cut(s) 367, 399
BsaI GGTCTC 2 cut(s) 309, 354
BsaJI CCNNGG 3 cut(s) 319, 414, 480
BsaWI WCCGGW 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 2 cut(s) 321, 416
BseDI CCNNGG 3 cut(s) 319, 414, 480
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 201
BseRI GAGGAG 2 cut(s) 189, 372
BseXI GCAGC 1 cut(s) 426
BshFI GGCC 2 cut(s) 401, 413
BsiHKCI CYCGRG 1 cut(s) 405
BsiSI CCGG 2 cut(s) 38, 361
BsmAI GTCTC 3 cut(s) 201, 309, 354
BsnI GGCC 2 cut(s) 401, 413
Bso31I GGTCTC 2 cut(s) 309, 354
BsoBI CYCGRG 1 cut(s) 405
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 1 cut(s) 169
Bsp19I CCATGG 1 cut(s) 480
BspACI CCGC 2 cut(s) 264, 437
BspANI GGCC 2 cut(s) 401, 413
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 42, 381
BspMAI CTGCAG 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 269
BspPI GGATC 1 cut(s) 164
BspTI CTTAAG 1 cut(s) 25
BspTNI GGTCTC 2 cut(s) 309, 354
BsrDI GCAATG 1 cut(s) 174
BssECI CCNNGG 3 cut(s) 319, 414, 480
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 2 cut(s) 321, 416
Bst4CI ACNGT 5 cut(s) 53, 60, 81, 123, 207
Bst6I CTCTTC 1 cut(s) 302
BstAFI CTTAAG 1 cut(s) 25
BstDEI CTNAG 3 cut(s) 210, 300, 386
BstDSI CCRYGG 1 cut(s) 480
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 3 cut(s) 201, 309, 354
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 2 cut(s) 321, 416
BstSCI CCNGG 2 cut(s) 319, 414
BstSFI CTRYAG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 426
BstV2I GAAGAC 2 cut(s) 65, 147
BstXI CCANNNNNNTGG 1 cut(s) 103
BsuRI GGCC 2 cut(s) 401, 413
BtgI CCRYGG 1 cut(s) 480
BtgZI GCGATG 2 cut(s) 118, 208
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 37
BveI ACCTGC 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 412
CviAII CATG 1 cut(s) 481
CviJI RGCY 7 cut(s) 43, 254, 364, 380, 401, 413, 474
CviKI_1 RGCY 7 cut(s) 43, 254, 364, 380, 401, 413, 474
DdeI CTNAG 3 cut(s) 210, 300, 386
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 382
Eco31I GGTCTC 2 cut(s) 309, 354
Eco57I CTGAAG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 405
EcoRII CCWGG 2 cut(s) 319, 414
EcoT14I CCWWGG 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 1 cut(s) 484
FaiI YATR 2 cut(s) 465, 482
FatI CATG 1 cut(s) 480
FauI CCCGC 1 cut(s) 444
Fnu4HI GCNGC 1 cut(s) 440
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 1 cut(s) 440
GluI GCNGC 1 cut(s) 440
HaeIII GGCC 2 cut(s) 401, 413
HapII CCGG 2 cut(s) 38, 361
Hin1II CATG 1 cut(s) 484
HinfI GANTC 4 cut(s) 5, 152, 194, 212
HpaII CCGG 2 cut(s) 38, 361
HphI GGTGA 2 cut(s) 85, 293
Hpy166II GTNNAC 2 cut(s) 35, 56
Hpy188I TCNGA 8 cut(s) 85, 127, 169, 211, 217, 274, 354, 375
Hpy188III TCNNGA 1 cut(s) 459
Hpy8I GTNNAC 2 cut(s) 35, 56
HpyCH4III ACNGT 5 cut(s) 53, 60, 81, 123, 207
HpyCH4V TGCA 2 cut(s) 163, 429
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 3 cut(s) 210, 300, 386
Hsp92II CATG 1 cut(s) 484
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 2 cut(s) 40, 385
LpnPI CCDG 7 cut(s) 51, 264, 306, 333, 374, 401, 428
Lsp1109I GCAGC 1 cut(s) 426
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 6 cut(s) 65, 147, 269, 316, 319, 352
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 2 cut(s) 324, 424
MlyI GAGTC 3 cut(s) 161, 203, 221
MmeI TCCRAC 2 cut(s) 171, 392
MnlI CCTC 8 cut(s) 126, 210, 268, 303, 324, 369, 393, 403
MseI TTAA 2 cut(s) 26, 335
MspA1I CMGCKG 2 cut(s) 254, 439
MspCI CTTAAG 1 cut(s) 25
MspI CCGG 2 cut(s) 38, 361
MspR9I CCNGG 2 cut(s) 321, 416
MvaI CCWGG 2 cut(s) 321, 416
MwoI GCNNNNNNNGC 1 cut(s) 251
NcoI CCATGG 1 cut(s) 480
NdeII GATC 1 cut(s) 169
NlaIII CATG 1 cut(s) 484
NlaIV GGNNCC 2 cut(s) 42, 381
PaqCI CACCTGC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 441
PleI GAGTC 3 cut(s) 160, 202, 220
PpsI GAGTC 3 cut(s) 160, 202, 220
Psp6I CCWGG 2 cut(s) 319, 414
PspGI CCWGG 2 cut(s) 319, 414
PspN4I GGNNCC 2 cut(s) 42, 381
PspPI GGNCC 1 cut(s) 412
PstI CTGCAG 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 254
SaqAI TTAA 2 cut(s) 26, 335
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 412
SchI GAGTC 3 cut(s) 161, 203, 221
ScrFI CCNGG 2 cut(s) 321, 416
SduI GDGCHC 1 cut(s) 382
SetI ASST 5 cut(s) 90, 256, 283, 301, 335
SfcI CTRYAG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 2 cut(s) 324, 424
SsiI CCGC 2 cut(s) 264, 437
StyD4I CCNGG 2 cut(s) 319, 414
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 5 cut(s) 53, 60, 81, 123, 207
TasI AATT 2 cut(s) 324, 424
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 26, 335
Tru9I TTAA 2 cut(s) 26, 335
TscAI CASTG 1 cut(s) 37
TseI GCWGC 1 cut(s) 439
TspDTI ATGAA 2 cut(s) 255, 353
TspRI CASTG 1 cut(s) 37
Vha464I CTTAAG 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 2 cut(s) 103, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.