Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011861

Physical Location & Seq

Genomic Coordinates Forward (+)

27182431 .. 27184748

Gene Structure 2318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013182

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCAATCCGATGAAGAATATGGCCGGAGGTTGCAGGAATTTCAGGCCGAATTAGCTTTCTCCAATGAGCTCCAGCAAAAACTCCAAAGAGTGGCAATGTATCATTCACTTCCAATGCGGTGTAAGAGAGTTGTGGATTTTCATCTAACATGCTCAGAGGAGAGAATCATCGTCATCATCACCTTAGCTCTTCAAGAAATGGAGATGAAACCAGGTCTCTTAGCTCTCGTCACCGGCGGAGCTTCTAGAATTGGATGTCACGATGAAGATTATGGCATTCTCTCAACAAGGATCTCGTGGTATTTGCAAATGGTACCATATCAAATGTCACACTTCGACAGCCCAGTACTTCTGGAGGTACTTTTAACATACGAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.59

Weight (kDa)

5.13

Isoelectric Point (pI)

58.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45850 AT2G45850 AT2G45850
fragaria_vesca	FvH4_3g30120
prunus_persica	Prupe.6G117900_v2.0.a1
rosa_laevigata	RLG00000013182 RLG00000034994 RLG00000034998
rosa_multiflora	Rmu_sc0003071.1_g000021 Rmu_sc0003989.1_g000016
rosa_roxburghii	Rroxscaffold_1G00024700 Rroxscaffold_1G00024710
rosa_rugosa	Rorug05G0293500
rosa_samantha	Rh5AG363500 Rh5BG375500 Rh5CG397200 Rh5CG397600 Rh5DG388700
rosa_wichuraiana	Rw5G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	313
AccB7I	CCANNNNNTGG	1 cut(s)	91
AciI	CCGC	2 cut(s)	118, 237
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	38
AfaI	GTAC	3 cut(s)	315, 348, 360
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	5 cut(s)	56, 70, 188, 224, 242
AluI	AGCT	5 cut(s)	56, 70, 188, 224, 242
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	2 cut(s)	22, 45
ApoI	RAATTY	1 cut(s)	38
Asp718I	GGTACC	1 cut(s)	313
AsuHPI	GGTGA	2 cut(s)	172, 223
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	246
BmcAI	AGTACT	1 cut(s)	348
Bme1390I	CCNGG	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	338
BmuI	ACTGGG	1 cut(s)	338
BpmI	CTGGAG	2 cut(s)	56, 374
Bpu10I	CCTNAGC	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	344
Bse3DI	GCAATG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	260
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	24, 47
BshNI	GGYRCC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	25, 234
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	2 cut(s)	24, 47
Bso31I	GGTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	2 cut(s)	118, 237
BspANI	GGCC	2 cut(s)	24, 47
BspCNI	CTCAG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	195
BspT107I	GGYRCC	1 cut(s)	313
BspTNI	GGTCTC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	233
BssMI	GATC	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	295
Bst2BI	CACGAG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	195
BstDEI	CTNAG	3 cut(s)	154, 184, 220
BstF5I	GGATG	1 cut(s)	260
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	24, 47
BtsCI	GGATG	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	233
CsiI	ACCWGGT	1 cut(s)	211
Csp6I	GTAC	3 cut(s)	314, 347, 359
CviAII	CATG	1 cut(s)	150
CviJI	RGCY	9 cut(s)	24, 47, 56, 70, 188, 224, 242, 342, 378
CviKI_1	RGCY	9 cut(s)	24, 47, 56, 70, 188, 224, 242, 342, 378
CviQI	GTAC	3 cut(s)	314, 347, 359
DdeI	CTNAG	3 cut(s)	154, 184, 220
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	72
FaeI	CATG	1 cut(s)	153
FaiI	YATR	5 cut(s)	21, 151, 273, 319, 370
FatI	CATG	1 cut(s)	149
FokI	GGATG	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	246
GsuI	CTGGAG	2 cut(s)	56, 374
HaeIII	GGCC	2 cut(s)	24, 47
HapII	CCGG	2 cut(s)	25, 234
Hin1II	CATG	1 cut(s)	153
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	2 cut(s)	25, 234
HphI	GGTGA	2 cut(s)	172, 223
Hpy188I	TCNGA	2 cut(s)	10, 157
Hpy188III	TCNNGA	4 cut(s)	194, 246, 260, 353
HpyCH4V	TGCA	3 cut(s)	4, 34, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	154, 184, 220
Hsp92II	CATG	1 cut(s)	153
KpnI	GGTACC	1 cut(s)	317
Kzo9I	GATC	1 cut(s)	291
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	75, 239
LpnPI	CCDG	9 cut(s)	20, 29, 38, 86, 198, 225, 247, 338, 357
MabI	ACCWGGT	1 cut(s)	211
MaeI	CTAG	1 cut(s)	246
MaeIII	GTNAC	3 cut(s)	229, 257, 327
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	3 cut(s)	26, 182, 278
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	3 cut(s)	38, 50, 249
MnlI	CCTC	4 cut(s)	21, 151, 349, 367
MseI	TTAA	1 cut(s)	365
MspI	CCGG	2 cut(s)	25, 234
MspR9I	CCNGG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	1 cut(s)	153
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	3 cut(s)	229, 257, 327
NspI	RCATGY	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	195
PctI	GAATGC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	91
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	3 cut(s)	315, 348, 360
RsaNI	GTAC	3 cut(s)	314, 347, 359
SacI	GAGCTC	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	365
Sau3AI	GATC	1 cut(s)	291
ScaI	AGTACT	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	9 cut(s)	32, 58, 72, 185, 190, 217, 226, 244, 360
SexAI	ACCWGGT	1 cut(s)	211
SgrAI	CRCCGGYG	1 cut(s)	233
Sse9I	AATT	3 cut(s)	38, 50, 249
SsiI	CCGC	2 cut(s)	118, 237
SspMI	CTAG	1 cut(s)	246
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	211
TaqI	TCGA	1 cut(s)	336
TasI	AATT	3 cut(s)	38, 50, 249
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TseFI	GTSAC	3 cut(s)	229, 257, 327
Tsp45I	GTSAC	3 cut(s)	229, 257, 327
TspDTI	ATGAA	4 cut(s)	27, 131, 221, 279
Van91I	CCANNNNNTGG	1 cut(s)	91
XapI	RAATTY	1 cut(s)	38
XbaI	TCTAGA	1 cut(s)	245
XceI	RCATGY	1 cut(s)	153
XspI	CTAG	1 cut(s)	246
ZrmI	AGTACT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.