Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012597

Physical Location & Seq

Genomic Coordinates Reverse (-)

23520989 .. 23524429

Gene Structure 3441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCGACAGAGCAAGAAATATCGCAAGCTTTAGAAGCCCTGGTGCACGACGGCCCGACCTCGTTCACCACCCTAAACGACGTCGTCCAGCAGCTCCAGTCCAAGCTCGCCTGCCACGACCTCTCCCACAAGGCCGACTTCATCCGCTCCCAGATCCACTTCCTCCTCCGATCCCATCCCCCGCCTCAGCAATCTCCAAAAGACCATTTTGCCCTCCAACAAAACCCCAATTGCCACCCGGCTCCCTCCTCCGCCTTCCAGACCTTCGCTTCCCCCAAGCCCGAGCCCATCACTACTCCCGTACCCGCATCCGACCCGCCCAAGGATGGCTCTAAGCCTAAACCTAAGAGAAAAGGAGGCCCGGGGGGTCTAAACAAGCTTTGTGGTGTTTCGCCTGAACTCCAGGTCATTGTTGGCCATCCAACTCTTCCAAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGAAAACACAATCTCCAAGATCCAGGTAACAAGAGGAAAATTATTTGCAATGATGAGCTGCGGTTGGTTTTCGAGACAGACTGTACTGACATGTTTAAGATGAACAAGTTGCTGGCCAAACATATCATTGCACTTGAACCTTCAAGTATGTATTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

210

Amino Acids

23.23

Weight (kDa)

8.79

Isoelectric Point (pI)

76.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	3 - 53	2.4e-07	DEK C terminal domain
SWIB	PF02201	127 - 198	2e-27	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30330
malus_domestica	MD03G1190700.v1.1 MD11G1207400.v1.1
prunus_persica	Prupe.4G228000_v2.0.a1
pyrus_communis	pycom03g14390 pycom11g18060
rosa_chinensis	RchiOBHm_Chr5g0056201
rosa_laevigata	RLG00000035063
rosa_multiflora	Rmu_co7981676.1_g000001 Rmu_sc0000680.1_g000024
rosa_roxburghii	Rroxscaffold_1G00024090
rosa_rugosa	Rorug05G0298000 Rorug05G0298100
rosa_samantha	Rh5AG369100 Rh5BG380200 Rh5CG403000 Rh5DG393200
rosa_wichuraiana	Rw0G004420 Rw0G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
AccBSI	CCGCTC	1 cut(s)	147
AciI	CCGC	6 cut(s)	145, 182, 252, 306, 317, 529
AclWI	GGATC	3 cut(s)	148, 165, 482
AcoI	YGGCCR	2 cut(s)	415, 582
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	2 cut(s)	303, 553
AfiI	CCNNNNNNNGG	2 cut(s)	322, 326
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	2 cut(s)	605, 612
AjnI	CCWGG	3 cut(s)	39, 402, 490
AluBI	AGCT	5 cut(s)	29, 94, 106, 379, 526
AluI	AGCT	5 cut(s)	29, 94, 106, 379, 526
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	536
Alw44I	GTGCAC	1 cut(s)	44
AlwI	GGATC	3 cut(s)	148, 165, 482
Ama87I	CYCGRG	2 cut(s)	281, 361
AoxI	GGCC	5 cut(s)	52, 132, 358, 415, 582
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	91, 526
AspS9I	GGNCC	2 cut(s)	53, 359
AsuC2I	CCSGG	3 cut(s)	239, 362, 363
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	2 cut(s)	281, 361
BaeGI	GKGCMC	1 cut(s)	48
BaeI	ACNNNNGTAYC	2 cut(s)	285, 318
BalI	TGGCCA	2 cut(s)	417, 584
BanII	GRGCYC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	48
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	103, 513
BccI	CCATC	4 cut(s)	183, 296, 320, 426
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	3 cut(s)	41, 404, 492
BcnI	CCSGG	3 cut(s)	239, 362, 363
BcoDI	GTCTC	1 cut(s)	536
BisI	GCNGC	2 cut(s)	92, 527
BlsI	GCNGC	2 cut(s)	93, 528
Bme1390I	CCNGG	6 cut(s)	41, 239, 362, 363, 404, 492
BmeT110I	CYCGRG	2 cut(s)	281, 361
BmgT120I	GGNCC	2 cut(s)	53, 359
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	6 cut(s)	41, 239, 362, 363, 404, 492
BmsI	GCATC	1 cut(s)	317
BpmI	CTGGAG	2 cut(s)	80, 386
Bpu10I	CCTNAGC	1 cut(s)	186
BpuMI	CCSGG	3 cut(s)	239, 362, 363
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	5 cut(s)	39, 321, 361, 362, 431
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 465, 495
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 326
Bse1I	ACTGG	1 cut(s)	97
Bse3DI	GCAATG	2 cut(s)	523, 594
BseBI	CCWGG	3 cut(s)	41, 404, 492
BseDI	CCNNGG	5 cut(s)	39, 321, 361, 362, 431
BseGI	GGATG	5 cut(s)	141, 175, 308, 331, 418
BseLI	CCNNNNNNNGG	2 cut(s)	322, 326
BseMI	GCAATG	2 cut(s)	523, 594
BseMII	CTCAG	2 cut(s)	200, 429
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	2 cut(s)	155, 238
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	103, 513
BshFI	GGCC	5 cut(s)	54, 134, 360, 417, 584
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	2 cut(s)	281, 361
BsiSI	CCGG	2 cut(s)	239, 362
BslI	CCNNNNNNNGG	2 cut(s)	322, 326
BsmAI	GTCTC	1 cut(s)	536
BsnI	GGCC	5 cut(s)	54, 134, 360, 417, 584
BsoBI	CYCGRG	2 cut(s)	281, 361
Bsp1286I	GDGCHC	2 cut(s)	48, 288
Bsp143I	GATC	3 cut(s)	153, 170, 487
BspACI	CCGC	6 cut(s)	145, 182, 252, 306, 317, 529
BspANI	GGCC	5 cut(s)	54, 134, 360, 417, 584
BspCNI	CTCAG	2 cut(s)	199, 430
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	3 cut(s)	148, 165, 482
BsrBI	CCGCTC	1 cut(s)	147
BsrDI	GCAATG	2 cut(s)	523, 594
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	5 cut(s)	39, 321, 361, 362, 431
BssMI	GATC	3 cut(s)	153, 170, 487
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	321, 431
Bst2UI	CCWGG	3 cut(s)	41, 404, 492
Bst4CI	ACNGT	2 cut(s)	456, 551
Bst6I	CTCTTC	1 cut(s)	432
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	4 cut(s)	27, 108, 112, 582
BstDEI	CTNAG	4 cut(s)	186, 333, 345, 438
BstF5I	GGATG	5 cut(s)	141, 175, 308, 331, 418
BstKTI	GATC	3 cut(s)	156, 173, 490
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	3 cut(s)	153, 170, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	3 cut(s)	41, 404, 492
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	6 cut(s)	39, 237, 360, 361, 402, 490
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	103, 513
BstX2I	RGATCY	2 cut(s)	153, 487
BstYI	RGATCY	2 cut(s)	153, 487
BsuRI	GGCC	5 cut(s)	54, 134, 360, 417, 584
BtsCI	GGATG	5 cut(s)	141, 175, 308, 331, 418
Cac8I	GCNNGC	4 cut(s)	27, 108, 112, 582
Cfr13I	GGNCC	2 cut(s)	53, 359
Cfr9I	CCCGGG	1 cut(s)	361
Csp6I	GTAC	2 cut(s)	302, 552
CspCI	CAANNNNNGTGG	2 cut(s)	364, 399
CviAII	CATG	1 cut(s)	559
CviQI	GTAC	2 cut(s)	302, 552
DdeI	CTNAG	4 cut(s)	186, 333, 345, 438
DpnI	GATC	3 cut(s)	155, 172, 489
DpnII	GATC	3 cut(s)	153, 170, 487
EaeI	YGGCCR	2 cut(s)	415, 582
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
EciI	GGCGGA	1 cut(s)	241
Eco130I	CCWWGG	2 cut(s)	321, 431
Eco24I	GRGCYC	1 cut(s)	288
Eco88I	CYCGRG	2 cut(s)	281, 361
EcoRII	CCWGG	3 cut(s)	39, 402, 490
EcoT14I	CCWWGG	2 cut(s)	321, 431
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	2 cut(s)	321, 431
FaeI	CATG	1 cut(s)	562
FaiI	YATR	4 cut(s)	467, 560, 591, 617
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	1 cut(s)	558
FauI	CCCGC	3 cut(s)	189, 313, 324
Fnu4HI	GCNGC	2 cut(s)	92, 527
FokI	GGATG	5 cut(s)	128, 162, 295, 338, 405
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	92, 527
GluI	GCNGC	2 cut(s)	92, 527
GsuI	CTGGAG	2 cut(s)	80, 386
HaeIII	GGCC	5 cut(s)	54, 134, 360, 417, 584
HapII	CCGG	2 cut(s)	239, 362
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	1 cut(s)	562
HindIII	AAGCTT	2 cut(s)	27, 377
HpaII	CCGG	2 cut(s)	239, 362
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	46, 66
Hpy188I	TCNGA	2 cut(s)	170, 313
Hpy188III	TCNNGA	2 cut(s)	259, 541
Hpy8I	GTNNAC	2 cut(s)	46, 66
Hpy99I	CGWCG	3 cut(s)	53, 83, 86
HpyAV	CCTTC	3 cut(s)	265, 274, 618
HpyCH4III	ACNGT	2 cut(s)	456, 551
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	46, 516, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	4 cut(s)	186, 333, 345, 438
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	562
Kzo9I	GATC	3 cut(s)	153, 170, 487
LmnI	GCTCC	3 cut(s)	99, 152, 247
Lsp1109I	GCAGC	2 cut(s)	103, 513
LweI	GCATC	1 cut(s)	317
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	3 cut(s)	155, 172, 489
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	3 cut(s)	153, 170, 487
MboII	GAAGA	1 cut(s)	419
MfeI	CAATTG	1 cut(s)	229
MflI	RGATCY	2 cut(s)	153, 487
MhlI	GDGCHC	2 cut(s)	48, 288
MlsI	TGGCCA	2 cut(s)	417, 584
MluCI	AATT	2 cut(s)	229, 507
MluNI	TGGCCA	2 cut(s)	417, 584
MmeI	TCCRAC	3 cut(s)	241, 336, 446
Mox20I	TGGCCA	2 cut(s)	417, 584
MscI	TGGCCA	2 cut(s)	417, 584
MseI	TTAA	1 cut(s)	564
Msp20I	TGGCCA	2 cut(s)	417, 584
MspI	CCGG	2 cut(s)	239, 362
MspR9I	CCNGG	6 cut(s)	41, 239, 362, 363, 404, 492
MunI	CAATTG	1 cut(s)	229
MvaI	CCWGG	3 cut(s)	41, 404, 492
MwoI	GCNNNNNNNGC	1 cut(s)	35
NciI	CCSGG	3 cut(s)	239, 362, 363
NdeII	GATC	3 cut(s)	153, 170, 487
NlaIII	CATG	1 cut(s)	562
NlaIV	GGNNCC	1 cut(s)	243
NspI	RCATGY	1 cut(s)	562
PciI	ACATGT	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	93, 528
PscI	ACATGT	1 cut(s)	558
Psp6I	CCWGG	3 cut(s)	39, 402, 490
PspGI	CCWGG	3 cut(s)	39, 402, 490
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	53, 359
PsuI	RGATCY	2 cut(s)	153, 487
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	2 cut(s)	303, 553
RsaNI	GTAC	2 cut(s)	302, 552
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	2 cut(s)	92, 527
Sau3AI	GATC	3 cut(s)	153, 170, 487
Sau96I	GGNCC	2 cut(s)	53, 359
ScrFI	CCNGG	6 cut(s)	41, 239, 362, 363, 404, 492
SduI	GDGCHC	2 cut(s)	48, 288
SfaNI	GCATC	1 cut(s)	317
SmaI	CCCGGG	1 cut(s)	363
Sse9I	AATT	2 cut(s)	229, 507
SsiI	CCGC	6 cut(s)	145, 182, 252, 306, 317, 529
StyD4I	CCNGG	6 cut(s)	39, 237, 360, 361, 402, 490
StyI	CCWWGG	2 cut(s)	321, 431
TaaI	ACNGT	2 cut(s)	456, 551
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	540
TasI	AATT	2 cut(s)	229, 507
TatI	WGTACW	1 cut(s)	551
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TseI	GCWGC	2 cut(s)	91, 526
TspDTI	ATGAA	2 cut(s)	130, 584
TspMI	CCCGGG	1 cut(s)	361
Tth111I	GACNNNGTC	1 cut(s)	83
VneI	GTGCAC	1 cut(s)	44
XceI	RCATGY	1 cut(s)	562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410
XmaI	CCCGGG	1 cut(s)	361
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.