Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0012597

Physical Location & Seq

Genomic Coordinates Reverse (-)

60193008 .. 60196324

Gene Structure 3317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG380200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCGACAGAGCAAGAGATATCGCAAGCTTTAGAAGCCCTGATCCACGCCTCCGACGCCCCGAAGTTCGCCACCCTAAACGACGTCGTGCAGCAGCTCGAGTCCAAGCTCGGCGGCCGCGACCTCTCCCACAAGGCCGACTTCATTCGGGCCCAGATCCACTACCTTCTCCAATCCCACAAGCCACCAACTCCCCCTCAGCCTCAGCCTCAGCCTCAGCCTCAGAATCAACCTCAACCTCCTCCTAAAGACCATTTTGCCCTCCAGCAAAACCCCAATTACCGCCCGCCTCCCTCCGCCTTCCAGACCTTCGCCTCCCACCCTCCTCAACTTCCTTCTCCCAAGCCTGAGCCCGAGCCCAGCACTACTCCCGTACCCGCATCCGTTTCCGCCTCCGACCCGCCACCTAAGGATGGCGCTAAACCTAAACCAAAGAGAAAAGGAGGCCCAGGGGGTTTAAACAAACTTTGTGGTGTTTCGCCTGAACTACAGGTCATTGTTGGCCATCCAACTCTTCCAAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGAAAACACAACCTCCAAGACCCTGGTAACAAGAGGAAAATTATTTGCAATGATGAGCTGCGGTTGGTTTTCGAGACAGACTGTACTGATATGTTTAAGATGAACAAGTTGCTGGCTAAACATATCATTGCACTTGAACCTTCAAGTATGTATTTGGTGAAACAGTTCCTTCTTCGTGTGTGCTGTCACACATTTGTGTCTCTGTGTTATATGTTATGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

259

Amino Acids

28.83

Weight (kDa)

9.03

Isoelectric Point (pI)

75.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	3 - 56	1.6e-08	DEK C terminal domain
SWIB	PF02201	156 - 227	3e-27	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30330
malus_domestica	MD03G1190700.v1.1 MD11G1207400.v1.1
prunus_persica	Prupe.4G228000_v2.0.a1
pyrus_communis	pycom03g14390 pycom11g18060
rosa_chinensis	RchiOBHm_Chr5g0056201
rosa_laevigata	RLG00000035063
rosa_multiflora	Rmu_co7981676.1_g000001 Rmu_sc0000680.1_g000024
rosa_roxburghii	Rroxscaffold_1G00024090
rosa_rugosa	Rorug05G0298000 Rorug05G0298100
rosa_samantha	Rh5AG369100 Rh5BG380200 Rh5CG403000 Rh5DG393200
rosa_wichuraiana	Rw0G004420 Rw0G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccII	CGCG	1 cut(s)	120
AciI	CCGC	9 cut(s)	114, 118, 283, 287, 297, 378, 390, 401, 616
AclWI	GGATC	2 cut(s)	37, 151
AcoI	YGGCCR	2 cut(s)	115, 502
AcyI	GRCGYC	2 cut(s)	57, 84
AfaI	GTAC	2 cut(s)	375, 640
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	692, 699
AjnI	CCWGG	2 cut(s)	448, 577
AleI	CACNNNNGTG	1 cut(s)	749
AluBI	AGCT	4 cut(s)	29, 97, 109, 613
AluI	AGCT	4 cut(s)	29, 97, 109, 613
Alw26I	GTCTC	2 cut(s)	623, 759
AlwI	GGATC	2 cut(s)	37, 151
Ama87I	CYCGRG	2 cut(s)	98, 353
AoxI	GGCC	5 cut(s)	115, 135, 150, 445, 502
ApaI	GGGCCC	1 cut(s)	154
ApeKI	GCWGC	3 cut(s)	91, 94, 613
Asp700I	GAANNNNTTC	1 cut(s)	719
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	3 cut(s)	150, 151, 446
AsuHPI	GGTGA	1 cut(s)	724
AvaI	CYCGRG	2 cut(s)	98, 353
AxyI	CCTNAGG	1 cut(s)	408
BaeGI	GKGCMC	1 cut(s)	154
BaeI	ACNNNNGTAYC	2 cut(s)	357, 390
BalI	TGGCCA	1 cut(s)	504
BanII	GRGCYC	3 cut(s)	154, 354, 360
BbvCI	CCTCAGC	4 cut(s)	198, 204, 210, 216
BbvI	GCAGC	3 cut(s)	103, 106, 600
BccI	CCATC	2 cut(s)	407, 513
BciT130I	CCWGG	2 cut(s)	450, 579
BcoDI	GTCTC	2 cut(s)	623, 759
BfmI	CTRYAG	1 cut(s)	488
BfoI	RGCGCY	1 cut(s)	420
BisI	GCNGC	5 cut(s)	92, 95, 115, 118, 614
BlsI	GCNGC	5 cut(s)	93, 96, 116, 119, 615
Bme1390I	CCNGG	2 cut(s)	450, 579
BmeT110I	CYCGRG	2 cut(s)	98, 353
BmgT120I	GGNCC	3 cut(s)	150, 151, 446
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	2 cut(s)	450, 579
BmsI	GCATC	1 cut(s)	389
BpmI	CTGGAG	1 cut(s)	248
Bpu10I	CCTNAGC	5 cut(s)	198, 204, 210, 216, 348
BsaHI	GRCGYC	2 cut(s)	57, 84
BsaJI	CCNNGG	4 cut(s)	448, 449, 518, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	2 cut(s)	610, 681
BseBI	CCWGG	2 cut(s)	450, 579
BseDI	CCNNGG	4 cut(s)	448, 449, 518, 577
BseGI	GGATG	3 cut(s)	380, 418, 505
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMI	GCAATG	2 cut(s)	610, 681
BseMII	CTCAG	7 cut(s)	212, 218, 224, 230, 236, 339, 516
BseRI	GAGGAG	2 cut(s)	231, 315
BseSI	GKGCMC	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	103, 106, 600
BseYI	CCCAGC	1 cut(s)	359
BsgI	GTGCAG	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	5 cut(s)	117, 137, 152, 447, 504
BsiEI	CGRYCG	1 cut(s)	118
BsiHKCI	CYCGRG	2 cut(s)	98, 353
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	2 cut(s)	623, 759
BsnI	GGCC	5 cut(s)	117, 137, 152, 447, 504
BsoBI	CYCGRG	2 cut(s)	98, 353
Bsp120I	GGGCCC	1 cut(s)	150
Bsp1286I	GDGCHC	3 cut(s)	154, 354, 360
Bsp143I	GATC	2 cut(s)	42, 156
BspACI	CCGC	9 cut(s)	114, 118, 283, 287, 297, 378, 390, 401, 616
BspANI	GGCC	5 cut(s)	117, 137, 152, 447, 504
BspCNI	CTCAG	7 cut(s)	211, 217, 223, 229, 235, 340, 517
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	152
BspPI	GGATC	2 cut(s)	37, 151
BsrDI	GCAATG	2 cut(s)	610, 681
BssECI	CCNNGG	4 cut(s)	448, 449, 518, 577
BssMI	GATC	2 cut(s)	42, 156
BssNI	GRCGYC	2 cut(s)	57, 84
BssT1I	CCWWGG	1 cut(s)	518
Bst2UI	CCWGG	2 cut(s)	450, 579
Bst4CI	ACNGT	3 cut(s)	543, 638, 720
Bst6I	CTCTTC	1 cut(s)	519
BstACI	GRCGYC	2 cut(s)	57, 84
BstC8I	GCNNGC	3 cut(s)	27, 287, 669
BstDEI	CTNAG	8 cut(s)	198, 204, 210, 216, 222, 348, 408, 525
BstF5I	GGATG	3 cut(s)	380, 418, 505
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	2 cut(s)	45, 159
BstMAI	GTCTC	2 cut(s)	623, 759
BstMBI	GATC	2 cut(s)	42, 156
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 56
BstNI	CCWGG	2 cut(s)	450, 579
BstSCI	CCNGG	2 cut(s)	448, 577
BstSFI	CTRYAG	1 cut(s)	488
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	103, 106, 600
BstX2I	RGATCY	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	156
BstZI	CGGCCG	1 cut(s)	115
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	5 cut(s)	117, 137, 152, 447, 504
BtsCI	GGATG	3 cut(s)	380, 418, 505
Cac8I	GCNNGC	3 cut(s)	27, 287, 669
CciNI	GCGGCCGC	1 cut(s)	115
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	3 cut(s)	150, 151, 446
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	374, 639
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviQI	GTAC	2 cut(s)	374, 639
DdeI	CTNAG	8 cut(s)	198, 204, 210, 216, 222, 348, 408, 525
DpnI	GATC	2 cut(s)	44, 158
DpnII	GATC	2 cut(s)	42, 156
DraI	TTTAAA	1 cut(s)	459
EaeI	YGGCCR	2 cut(s)	115, 502
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
EciI	GGCGGA	2 cut(s)	286, 379
EclXI	CGGCCG	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	518
Eco24I	GRGCYC	3 cut(s)	154, 354, 360
Eco32I	GATATC	1 cut(s)	21
Eco52I	CGGCCG	1 cut(s)	115
Eco81I	CCTNAGG	1 cut(s)	408
Eco88I	CYCGRG	2 cut(s)	98, 353
EcoRII	CCWGG	2 cut(s)	448, 577
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	518
EcoT38I	GRGCYC	3 cut(s)	154, 354, 360
ErhI	CCWWGG	1 cut(s)	518
FaiI	YATR	7 cut(s)	554, 647, 678, 704, 765, 767, 772
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FauI	CCCGC	3 cut(s)	294, 385, 408
Fnu4HI	GCNGC	5 cut(s)	92, 95, 115, 118, 614
FokI	GGATG	3 cut(s)	367, 425, 492
FriOI	GRGCYC	3 cut(s)	154, 354, 360
Fsp4HI	GCNGC	5 cut(s)	92, 95, 115, 118, 614
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	5 cut(s)	92, 95, 115, 118, 614
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	5 cut(s)	117, 137, 152, 447, 504
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	419
Hin1I	GRCGYC	2 cut(s)	57, 84
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	2 cut(s)	101, 226
HphI	GGTGA	1 cut(s)	724
Hpy188I	TCNGA	3 cut(s)	55, 225, 397
Hpy188III	TCNNGA	2 cut(s)	304, 628
Hpy99I	CGWCG	3 cut(s)	59, 86, 89
HpyAV	CCTTC	6 cut(s)	176, 310, 319, 345, 705, 734
HpyCH4III	ACNGT	3 cut(s)	543, 638, 720
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	91, 603, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 56
HpyF3I	CTNAG	8 cut(s)	198, 204, 210, 216, 222, 348, 408, 525
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	2 cut(s)	57, 84
HspAI	GCGC	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	42, 156
Lsp1109I	GCAGC	3 cut(s)	103, 106, 600
LweI	GCATC	1 cut(s)	389
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	581, 740
MalI	GATC	2 cut(s)	44, 158
MboI	GATC	2 cut(s)	42, 156
MboII	GAAGA	2 cut(s)	506, 719
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	3 cut(s)	154, 354, 360
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	2 cut(s)	277, 594
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	3 cut(s)	78, 420, 533
Mox20I	TGGCCA	1 cut(s)	504
MroXI	GAANNNNTTC	1 cut(s)	719
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	2 cut(s)	458, 651
MslI	CAYNNNNRTG	1 cut(s)	749
Msp20I	TGGCCA	1 cut(s)	504
MspR9I	CCNGG	2 cut(s)	450, 579
MssI	GTTTAAAC	1 cut(s)	459
MvaI	CCWGG	2 cut(s)	450, 579
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	35, 56
NdeII	GATC	2 cut(s)	42, 156
NlaIV	GGNNCC	1 cut(s)	152
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	740
NotI	GCGGCCGC	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	749
PaeR7I	CTCGAG	1 cut(s)	98
PasI	CCCWGGG	1 cut(s)	449
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	5 cut(s)	93, 96, 116, 119, 615
PleI	GAGTC	1 cut(s)	109
PmeI	GTTTAAAC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	448, 577
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	2 cut(s)	448, 577
PspN4I	GGNNCC	1 cut(s)	152
PspOMI	GGGCCC	1 cut(s)	150
PspPI	GGNCC	3 cut(s)	150, 151, 446
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	2 cut(s)	375, 640
RsaNI	GTAC	2 cut(s)	374, 639
RseI	CAYNNNNRTG	1 cut(s)	749
SaqAI	TTAA	2 cut(s)	458, 651
SatI	GCNGC	5 cut(s)	92, 95, 115, 118, 614
Sau3AI	GATC	2 cut(s)	42, 156
Sau96I	GGNCC	3 cut(s)	150, 151, 446
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	450, 579
SduI	GDGCHC	3 cut(s)	154, 354, 360
SfaNI	GCATC	1 cut(s)	389
SfcI	CTRYAG	1 cut(s)	488
Sfr274I	CTCGAG	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	749
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	2 cut(s)	277, 594
SsiI	CCGC	9 cut(s)	114, 118, 283, 287, 297, 378, 390, 401, 616
StyD4I	CCNGG	2 cut(s)	448, 577
StyI	CCWWGG	1 cut(s)	518
TaaI	ACNGT	3 cut(s)	543, 638, 720
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	99, 627
TasI	AATT	2 cut(s)	277, 594
TatI	WGTACW	1 cut(s)	638
TauI	GCSGC	2 cut(s)	117, 120
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	2 cut(s)	458, 651
Tru9I	TTAA	2 cut(s)	458, 651
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	3 cut(s)	91, 94, 613
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	2 cut(s)	133, 671
TspGWI	ACGGA	1 cut(s)	373
XhoI	CTCGAG	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	719
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.