Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00168

Orthogroup ID

OG0012597

Physical Location & Seq

Genomic Coordinates Forward (+)

132870 .. 136094

Gene Structure 3225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGGAAGAGCAAGAGATATCGCAAGCTTTAGAAGCCCTGATCCACGCCTCCGACGCCCCGAAGTTCGCCACCCTAAACGACGTCGTGCAGCAGCTCGAGTCCAAGCTCGGCGGCCGCGACCTCTCCCACAAGGCCGACTTCATTCGGGCCCAGATCCACTACCTTCTCCAATCCCACCCGCCACCAATTCCCCCTCCTCCCCAGCCTCAGCCTCAGCCTCAGCCTCAGAATCAACCTCAACCTCCTCCTAAAGACCATTTTGCCCTCCAGCAAAACCCCAATTACCGCCCGCCTCCCTCCGCCTTCCAGACCTTCGCCTCCCACCCTCCTCAACTTCCTTCTCCCAAGCCCGAGCCCGAGCCCGAGCCCAGCACTACTCCCGTACCCGCATCCGTTTCCGCCTCCGACCCGCCGCCTAAGGATGGCGCTAAACCTAAACCAAAGAGAAAAGGAGGCCCAGGGGGTTTAAACAAACTTTGTGGTGTTTCGCCTGAACTACAGGTCATTGTTGGCCATCCAACTCTTCCAAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGAAAACACAACCTCCAAGACCCTGGTAACAAGAGGAAAATTATTTGCAATGATGAGCTGCGGTTGGTTTTCGAGACAGACTGTACTGATATGTTTAAGATGAACAAGTTGCTGGCTAAACATATCATTGCACTTGAACCTTCAAGTATGTATTTGGTGAAACAGTTCCTTCTTCGTGTGTGCTGTCACACATTTGTGTCTCTGTGTTATATGTTATGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

263

Amino Acids

29.26

Weight (kDa)

8.62

Isoelectric Point (pI)

77.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	3 - 56	3.9e-08	DEK C terminal domain
SWIB	PF02201	160 - 231	3.1e-27	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30330
malus_domestica	MD03G1190700.v1.1 MD11G1207400.v1.1
prunus_persica	Prupe.4G228000_v2.0.a1
pyrus_communis	pycom03g14390 pycom11g18060
rosa_chinensis	RchiOBHm_Chr5g0056201
rosa_laevigata	RLG00000035063
rosa_multiflora	Rmu_co7981676.1_g000001 Rmu_sc0000680.1_g000024
rosa_roxburghii	Rroxscaffold_1G00024090
rosa_rugosa	Rorug05G0298000 Rorug05G0298100
rosa_samantha	Rh5AG369100 Rh5BG380200 Rh5CG403000 Rh5DG393200
rosa_wichuraiana	Rw0G004420 Rw0G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccII	CGCG	1 cut(s)	120
AclWI	GGATC	2 cut(s)	37, 151
AcoI	YGGCCR	2 cut(s)	115, 514
AcyI	GRCGYC	2 cut(s)	57, 84
AfaI	GTAC	2 cut(s)	387, 652
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	704, 711
AjnI	CCWGG	2 cut(s)	460, 589
AleI	CACNNNNGTG	1 cut(s)	761
AluBI	AGCT	4 cut(s)	29, 97, 109, 625
AluI	AGCT	4 cut(s)	29, 97, 109, 625
Alw26I	GTCTC	2 cut(s)	635, 771
AlwI	GGATC	2 cut(s)	37, 151
Ama87I	CYCGRG	4 cut(s)	98, 353, 359, 365
AoxI	GGCC	5 cut(s)	115, 135, 150, 457, 514
ApaI	GGGCCC	1 cut(s)	154
ApeKI	GCWGC	3 cut(s)	91, 94, 625
Asp700I	GAANNNNTTC	1 cut(s)	731
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	3 cut(s)	150, 151, 458
AsuHPI	GGTGA	1 cut(s)	736
AvaI	CYCGRG	4 cut(s)	98, 353, 359, 365
AxyI	CCTNAGG	1 cut(s)	420
BaeGI	GKGCMC	1 cut(s)	154
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BalI	TGGCCA	1 cut(s)	516
BanII	GRGCYC	4 cut(s)	154, 360, 366, 372
BbvCI	CCTCAGC	3 cut(s)	210, 216, 222
BbvI	GCAGC	3 cut(s)	103, 106, 612
BccI	CCATC	2 cut(s)	419, 525
BciT130I	CCWGG	2 cut(s)	462, 591
BcoDI	GTCTC	2 cut(s)	635, 771
BfmI	CTRYAG	1 cut(s)	500
BfoI	RGCGCY	1 cut(s)	432
BisI	GCNGC	6 cut(s)	92, 95, 115, 118, 416, 626
BlsI	GCNGC	6 cut(s)	93, 96, 116, 119, 417, 627
Bme1390I	CCNGG	2 cut(s)	462, 591
BmeT110I	CYCGRG	4 cut(s)	98, 353, 359, 365
BmgT120I	GGNCC	3 cut(s)	150, 151, 458
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	2 cut(s)	462, 591
BmsI	GCATC	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	254
Bpu10I	CCTNAGC	3 cut(s)	210, 216, 222
BsaHI	GRCGYC	2 cut(s)	57, 84
BsaJI	CCNNGG	4 cut(s)	460, 461, 530, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse21I	CCTNAGG	1 cut(s)	420
Bse3DI	GCAATG	2 cut(s)	622, 693
BseBI	CCWGG	2 cut(s)	462, 591
BseDI	CCNNGG	4 cut(s)	460, 461, 530, 589
BseGI	GGATG	3 cut(s)	392, 430, 517
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMI	GCAATG	2 cut(s)	622, 693
BseMII	CTCAG	5 cut(s)	224, 230, 236, 242, 528
BseRI	GAGGAG	3 cut(s)	189, 237, 321
BseSI	GKGCMC	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	103, 106, 612
BseYI	CCCAGC	2 cut(s)	204, 371
BsgI	GTGCAG	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	5 cut(s)	117, 137, 152, 459, 516
BsiEI	CGRYCG	1 cut(s)	118
BsiHKCI	CYCGRG	4 cut(s)	98, 353, 359, 365
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmAI	GTCTC	2 cut(s)	635, 771
BsnI	GGCC	5 cut(s)	117, 137, 152, 459, 516
BsoBI	CYCGRG	4 cut(s)	98, 353, 359, 365
Bsp120I	GGGCCC	1 cut(s)	150
Bsp1286I	GDGCHC	4 cut(s)	154, 360, 366, 372
Bsp143I	GATC	2 cut(s)	42, 156
BspANI	GGCC	5 cut(s)	117, 137, 152, 459, 516
BspCNI	CTCAG	5 cut(s)	223, 229, 235, 241, 529
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	152
BspPI	GGATC	2 cut(s)	37, 151
BspQI	GCTCTTC	1 cut(s)	3
BsrDI	GCAATG	2 cut(s)	622, 693
BssECI	CCNNGG	4 cut(s)	460, 461, 530, 589
BssMI	GATC	2 cut(s)	42, 156
BssNI	GRCGYC	2 cut(s)	57, 84
BssT1I	CCWWGG	1 cut(s)	530
Bst2UI	CCWGG	2 cut(s)	462, 591
Bst4CI	ACNGT	3 cut(s)	555, 650, 732
Bst6I	CTCTTC	2 cut(s)	3, 531
BstACI	GRCGYC	2 cut(s)	57, 84
BstC8I	GCNNGC	3 cut(s)	27, 293, 681
BstDEI	CTNAG	6 cut(s)	210, 216, 222, 228, 420, 537
BstF5I	GGATG	3 cut(s)	392, 430, 517
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	2 cut(s)	45, 159
BstMAI	GTCTC	2 cut(s)	635, 771
BstMBI	GATC	2 cut(s)	42, 156
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 56
BstNI	CCWGG	2 cut(s)	462, 591
BstSCI	CCNGG	2 cut(s)	460, 589
BstSFI	CTRYAG	1 cut(s)	500
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	103, 106, 612
BstX2I	RGATCY	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	156
BstZI	CGGCCG	1 cut(s)	115
Bsu36I	CCTNAGG	1 cut(s)	420
BsuRI	GGCC	5 cut(s)	117, 137, 152, 459, 516
BtsCI	GGATG	3 cut(s)	392, 430, 517
Cac8I	GCNNGC	3 cut(s)	27, 293, 681
CciNI	GCGGCCGC	1 cut(s)	115
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	3 cut(s)	150, 151, 458
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	386, 651
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviQI	GTAC	2 cut(s)	386, 651
DdeI	CTNAG	6 cut(s)	210, 216, 222, 228, 420, 537
DpnI	GATC	2 cut(s)	44, 158
DpnII	GATC	2 cut(s)	42, 156
DraI	TTTAAA	1 cut(s)	471
EaeI	YGGCCR	2 cut(s)	115, 514
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	3, 531
EarI	CTCTTC	2 cut(s)	3, 531
EciI	GGCGGA	3 cut(s)	20, 292, 391
EclXI	CGGCCG	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	530
Eco24I	GRGCYC	4 cut(s)	154, 360, 366, 372
Eco32I	GATATC	1 cut(s)	21
Eco52I	CGGCCG	1 cut(s)	115
Eco81I	CCTNAGG	1 cut(s)	420
Eco88I	CYCGRG	4 cut(s)	98, 353, 359, 365
EcoRII	CCWGG	2 cut(s)	460, 589
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	530
EcoT38I	GRGCYC	4 cut(s)	154, 360, 366, 372
ErhI	CCWWGG	1 cut(s)	530
FaiI	YATR	7 cut(s)	566, 659, 690, 716, 777, 779, 784
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FauI	CCCGC	4 cut(s)	189, 300, 397, 420
Fnu4HI	GCNGC	6 cut(s)	92, 95, 115, 118, 416, 626
FokI	GGATG	3 cut(s)	379, 437, 504
FriOI	GRGCYC	4 cut(s)	154, 360, 366, 372
Fsp4HI	GCNGC	6 cut(s)	92, 95, 115, 118, 416, 626
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	6 cut(s)	92, 95, 115, 118, 416, 626
GsaI	CCCAGC	2 cut(s)	208, 375
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	5 cut(s)	117, 137, 152, 459, 516
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	431
Hin1I	GRCGYC	2 cut(s)	57, 84
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	2 cut(s)	101, 232
HphI	GGTGA	1 cut(s)	736
Hpy188I	TCNGA	3 cut(s)	55, 231, 409
Hpy188III	TCNNGA	2 cut(s)	310, 640
Hpy99I	CGWCG	3 cut(s)	59, 86, 89
HpyAV	CCTTC	6 cut(s)	176, 316, 325, 351, 717, 746
HpyCH4III	ACNGT	3 cut(s)	555, 650, 732
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	91, 615, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 56
HpyF3I	CTNAG	6 cut(s)	210, 216, 222, 228, 420, 537
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	2 cut(s)	57, 84
HspAI	GCGC	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	42, 156
LguI	GCTCTTC	1 cut(s)	3
Lsp1109I	GCAGC	3 cut(s)	103, 106, 612
LweI	GCATC	1 cut(s)	401
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	593, 752
MalI	GATC	2 cut(s)	44, 158
MboI	GATC	2 cut(s)	42, 156
MboII	GAAGA	3 cut(s)	20, 518, 731
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	4 cut(s)	154, 360, 366, 372
MlsI	TGGCCA	1 cut(s)	516
MluCI	AATT	3 cut(s)	189, 283, 606
MluNI	TGGCCA	1 cut(s)	516
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	3 cut(s)	78, 432, 545
Mox20I	TGGCCA	1 cut(s)	516
MroXI	GAANNNNTTC	1 cut(s)	731
MscI	TGGCCA	1 cut(s)	516
MseI	TTAA	2 cut(s)	470, 663
MslI	CAYNNNNRTG	1 cut(s)	761
Msp20I	TGGCCA	1 cut(s)	516
MspR9I	CCNGG	2 cut(s)	462, 591
MssI	GTTTAAAC	1 cut(s)	471
MvaI	CCWGG	2 cut(s)	462, 591
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	35, 56
NdeII	GATC	2 cut(s)	42, 156
NlaIV	GGNNCC	1 cut(s)	152
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	752
NotI	GCGGCCGC	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	761
PaeR7I	CTCGAG	1 cut(s)	98
PasI	CCCWGGG	1 cut(s)	461
PciSI	GCTCTTC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	731
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	6 cut(s)	93, 96, 116, 119, 417, 627
PleI	GAGTC	1 cut(s)	109
PmeI	GTTTAAAC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	460, 589
PspFI	CCCAGC	2 cut(s)	204, 371
PspGI	CCWGG	2 cut(s)	460, 589
PspN4I	GGNNCC	1 cut(s)	152
PspOMI	GGGCCC	1 cut(s)	150
PspPI	GGNCC	3 cut(s)	150, 151, 458
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	2 cut(s)	387, 652
RsaNI	GTAC	2 cut(s)	386, 651
RseI	CAYNNNNRTG	1 cut(s)	761
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	2 cut(s)	470, 663
SatI	GCNGC	6 cut(s)	92, 95, 115, 118, 416, 626
Sau3AI	GATC	2 cut(s)	42, 156
Sau96I	GGNCC	3 cut(s)	150, 151, 458
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	462, 591
SduI	GDGCHC	4 cut(s)	154, 360, 366, 372
SfaNI	GCATC	1 cut(s)	401
SfcI	CTRYAG	1 cut(s)	500
Sfr274I	CTCGAG	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	761
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	189, 283, 606
StyD4I	CCNGG	2 cut(s)	460, 589
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	3 cut(s)	555, 650, 732
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	99, 639
TasI	AATT	3 cut(s)	189, 283, 606
TatI	WGTACW	1 cut(s)	650
TauI	GCSGC	3 cut(s)	117, 120, 418
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	2 cut(s)	470, 663
Tru9I	TTAA	2 cut(s)	470, 663
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	3 cut(s)	91, 94, 625
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	2 cut(s)	133, 683
TspGWI	ACGGA	1 cut(s)	385
XhoI	CTCGAG	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	731
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.