Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012597

Physical Location & Seq

Genomic Coordinates Reverse (-)

30198467 .. 30202669

Gene Structure 4203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1207400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTGACAGAACAAGAGATATCGCAAGCGTTACAAGCCCTAATCCACGACTCCACTTCCAACCCTAACACCACCACCCCGACCTTCACCACCCTGAACGACGTCGTCCAGCAGCTCCAGTCCCGCCTCGGCGTCGACCTCTCCCACAAGACCGACTTCATTCGGGCTCAGATCCACTACCTCTTCCGATCCCACCCACCCACTCCCCAACCTCAACCCCAACCCCAACCCCAACCCCAACCTCAACAAATTCCTCACCCTCAGCACCCTAAAGACCATTTTTCCCTTCACCAACCCCCTAATTACCATCACCCTGCCCCCTCCGCTTTCCAGACCTTCTCCTCCCAGCCCCCGCCTCCACTCCTGAAGCCCGAGCCCGCCTCCGCCGCTCCTCCGCCCGTTTCCGGCTCTAACACGCCCAAGGAGAGCCCTAAGCCTAAATCTAAGAGAAAAGGTGGCCCCGGAGGTTTAAATAAACTTTGTGGTGTTTCGCCTGAGCTTCAGGCCATTGTTGGCCACCCAACTCTCCCAAGGACTGAGATTGTTAAACAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGATCCCGGTAACAAGAGGAGAATTATTTGCAATGATGAGCTGCGAGTGGTTTTTGAGACAGACTGTACTGACATGTTTAAGATGAACAAGTTGCTTGCTAAACATATTATTCCACTCGAACCATCAAAACCAGCAGTTCCCAAGAAGCCCAAGGTGCCTAAGAATGCTGTGGAGTCTGCAACGAAAAGTACAGAACCGAGTCCTTCCCTGATAATATCTGAAGCACTTGCAAATTTTTTTGGTGTTGGAGTAAGGGAGATGATCCAATCAGAGGTTTTAATGCGTATCTGGGAGTACATAAATGTCCACCATCTGGAGGATCCTCAAAATCAAATGGCTATACATTGTGATGCAAAGCTTCAAGAGATCTTTGGTTGCGAAACCATCAATGCATTGGAAATACCAGATATTTTGGAACGTCATCACATATTCAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

342

Amino Acids

38.24

Weight (kDa)

8.72

Isoelectric Point (pI)

71.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	3 - 60	6.2e-08	DEK C terminal domain
SWIB	PF02201	160 - 231	1.5e-27	SWIB/MDM2 domain
SWIB	PF02201	266 - 336	2.2e-21	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30330
malus_domestica	MD03G1190700.v1.1 MD11G1207400.v1.1
prunus_persica	Prupe.4G228000_v2.0.a1
pyrus_communis	pycom03g14390 pycom11g18060
rosa_chinensis	RchiOBHm_Chr5g0056201
rosa_laevigata	RLG00000035063
rosa_multiflora	Rmu_co7981676.1_g000001 Rmu_sc0000680.1_g000024
rosa_roxburghii	Rroxscaffold_1G00024090
rosa_rugosa	Rorug05G0298000 Rorug05G0298100
rosa_samantha	Rh5AG369100 Rh5BG380200 Rh5CG403000 Rh5DG393200
rosa_wichuraiana	Rw0G004420 Rw0G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	739
AccB7I	CCANNNNNTGG	1 cut(s)	898
AccBSI	CCGCTC	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	7 cut(s)	124, 324, 353, 378, 384, 387, 395
AclWI	GGATC	6 cut(s)	166, 183, 581, 841, 899, 912
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	2 cut(s)	249, 817
AcuI	CTGAAG	3 cut(s)	386, 485, 825
AcyI	GRCGYC	2 cut(s)	102, 132
AfaI	GTAC	3 cut(s)	652, 775, 881
AfiI	CCNNNNNNNGG	4 cut(s)	404, 856, 898, 901
AflIII	ACRYGT	1 cut(s)	657
AgsI	TTSAA	1 cut(s)	947
AluBI	AGCT	4 cut(s)	115, 499, 625, 943
AluI	AGCT	4 cut(s)	115, 499, 625, 943
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	6 cut(s)	166, 183, 581, 841, 899, 912
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	3 cut(s)	457, 504, 514
ApeKI	GCWGC	2 cut(s)	112, 625
ApoI	RAATTY	2 cut(s)	249, 817
AspS9I	GGNCC	1 cut(s)	458
AsuC2I	CCSGG	2 cut(s)	462, 591
AsuHPI	GGTGA	5 cut(s)	16, 79, 248, 281, 302
AvaI	CYCGRG	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	516
BamHI	GGATCC	1 cut(s)	904
BanI	GGYRCC	1 cut(s)	739
BanII	GRGCYC	3 cut(s)	169, 378, 431
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	124, 612
BccI	CCATC	4 cut(s)	315, 715, 903, 977
BcnI	CCSGG	2 cut(s)	462, 591
BcoDI	GTCTC	1 cut(s)	635
BglII	AGATCT	1 cut(s)	951
BisI	GCNGC	3 cut(s)	113, 387, 626
BlsI	GCNGC	3 cut(s)	114, 388, 627
Bme1390I	CCNGG	2 cut(s)	462, 591
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	3 cut(s)	460, 741, 906
BmrFI	CCNGG	2 cut(s)	462, 591
BmsI	GCATC	1 cut(s)	925
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpmI	CTGGAG	2 cut(s)	101, 920
Bpu10I	CCTNAGC	3 cut(s)	261, 432, 495
BpuMI	CCSGG	2 cut(s)	462, 591
BsaHI	GRCGYC	2 cut(s)	102, 132
BsaJI	CCNNGG	5 cut(s)	127, 420, 460, 530, 735
Bsc4I	CCNNNNNNNGG	4 cut(s)	404, 856, 898, 901
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	622
BseDI	CCNNGG	5 cut(s)	127, 420, 460, 530, 735
BseLI	CCNNNNNNNGG	4 cut(s)	404, 856, 898, 901
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	4 cut(s)	182, 275, 486, 528
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	3 cut(s)	331, 381, 616
BseXI	GCAGC	2 cut(s)	124, 612
BseYI	CCCAGC	1 cut(s)	345
BshFI	GGCC	3 cut(s)	459, 506, 516
BshNI	GGYRCC	1 cut(s)	739
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	405, 462, 591
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	4 cut(s)	404, 856, 898, 901
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	3 cut(s)	459, 506, 516
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	3 cut(s)	169, 378, 431
Bsp143I	GATC	6 cut(s)	171, 188, 586, 846, 904, 951
BspACI	CCGC	7 cut(s)	124, 324, 353, 378, 384, 387, 395
BspANI	GGCC	3 cut(s)	459, 506, 516
BspCNI	CTCAG	4 cut(s)	181, 274, 487, 529
BspLI	GGNNCC	3 cut(s)	460, 741, 906
BspPI	GGATC	6 cut(s)	166, 183, 581, 841, 899, 912
BspT107I	GGYRCC	1 cut(s)	739
BsrBI	CCGCTC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	622
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	5 cut(s)	127, 420, 460, 530, 735
BssMI	GATC	6 cut(s)	171, 188, 586, 846, 904, 951
BssNI	GRCGYC	2 cut(s)	102, 132
BssT1I	CCWWGG	3 cut(s)	420, 530, 735
Bst4CI	ACNGT	2 cut(s)	555, 650
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	2 cut(s)	102, 132
BstC8I	GCNNGC	3 cut(s)	27, 378, 681
BstDEI	CTNAG	7 cut(s)	168, 261, 432, 444, 495, 537, 744
BstKTI	GATC	6 cut(s)	174, 191, 589, 849, 907, 954
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	6 cut(s)	171, 188, 586, 846, 904, 951
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 323, 386, 739
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	2 cut(s)	460, 589
BstV1I	GCAGC	2 cut(s)	124, 612
BstX2I	RGATCY	4 cut(s)	171, 586, 904, 951
BstYI	RGATCY	4 cut(s)	171, 586, 904, 951
BsuRI	GGCC	3 cut(s)	459, 506, 516
Cac8I	GCNNGC	3 cut(s)	27, 378, 681
Cfr13I	GGNCC	1 cut(s)	458
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	3 cut(s)	651, 774, 880
CviAII	CATG	1 cut(s)	658
CviQI	GTAC	3 cut(s)	651, 774, 880
DdeI	CTNAG	7 cut(s)	168, 261, 432, 444, 495, 537, 744
DpnI	GATC	6 cut(s)	173, 190, 588, 848, 906, 953
DpnII	GATC	6 cut(s)	171, 188, 586, 846, 904, 951
DraI	TTTAAA	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	2 cut(s)	373, 384
Eco130I	CCWWGG	3 cut(s)	420, 530, 735
Eco24I	GRGCYC	3 cut(s)	169, 378, 431
Eco32I	GATATC	1 cut(s)	21
Eco57I	CTGAAG	3 cut(s)	386, 485, 825
Eco88I	CYCGRG	1 cut(s)	371
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	3 cut(s)	420, 530, 735
EcoT22I	ATGCAT	1 cut(s)	979
EcoT38I	GRGCYC	3 cut(s)	169, 378, 431
ErhI	CCWWGG	3 cut(s)	420, 530, 735
FaeI	CATG	1 cut(s)	661
FaiI	YATR	6 cut(s)	566, 659, 690, 884, 926, 1013
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	657
FauI	CCCGC	3 cut(s)	131, 360, 385
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	113, 387, 626
FriOI	GRGCYC	3 cut(s)	169, 378, 431
Fsp4HI	GCNGC	3 cut(s)	113, 387, 626
GluI	GCNGC	3 cut(s)	113, 387, 626
GsaI	CCCAGC	1 cut(s)	349
GsuI	CTGGAG	2 cut(s)	101, 920
HaeIII	GGCC	3 cut(s)	459, 506, 516
HapII	CCGG	3 cut(s)	405, 462, 591
HgaI	GACGC	1 cut(s)	121
Hin1I	GRCGYC	2 cut(s)	102, 132
Hin1II	CATG	1 cut(s)	661
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	941
HinfI	GANTC	3 cut(s)	50, 758, 784
HpaII	CCGG	3 cut(s)	405, 462, 591
HphI	GGTGA	5 cut(s)	16, 79, 248, 281, 302
Hpy166II	GTNNAC	2 cut(s)	136, 892
Hpy188I	TCNGA	4 cut(s)	171, 188, 805, 856
Hpy188III	TCNNGA	5 cut(s)	331, 364, 899, 947, 1018
Hpy8I	GTNNAC	2 cut(s)	136, 892
Hpy99I	CGWCG	3 cut(s)	104, 107, 137
HpyAV	CCTTC	4 cut(s)	94, 296, 346, 798
HpyCH4III	ACNGT	2 cut(s)	555, 650
HpyCH4IV	ACGT	2 cut(s)	102, 1003
HpyCH4V	TGCA	5 cut(s)	615, 764, 815, 938, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 323, 386, 739
HpyF3I	CTNAG	7 cut(s)	168, 261, 432, 444, 495, 537, 744
HpySE526I	ACGT	2 cut(s)	102, 1003
Hsp92I	GRCGYC	2 cut(s)	102, 132
Hsp92II	CATG	1 cut(s)	661
Kzo9I	GATC	6 cut(s)	171, 188, 586, 846, 904, 951
LmnI	GCTCC	2 cut(s)	120, 394
Lsp1109I	GCAGC	2 cut(s)	124, 612
LweI	GCATC	1 cut(s)	925
MaeII	ACGT	2 cut(s)	102, 1003
MaeIII	GTNAC	3 cut(s)	4, 30, 593
MalI	GATC	6 cut(s)	173, 190, 588, 848, 906, 953
MbiI	CCGCTC	1 cut(s)	389
MboI	GATC	6 cut(s)	171, 188, 586, 846, 904, 951
MboII	GAAGA	2 cut(s)	175, 583
MflI	RGATCY	4 cut(s)	171, 586, 904, 951
MhlI	GDGCHC	3 cut(s)	169, 378, 431
MlsI	TGGCCA	1 cut(s)	516
MluCI	AATT	4 cut(s)	249, 301, 606, 817
MluNI	TGGCCA	1 cut(s)	516
MlyI	GAGTC	3 cut(s)	44, 767, 793
MmeI	TCCRAC	2 cut(s)	84, 811
Mox20I	TGGCCA	1 cut(s)	516
Mph1103I	ATGCAT	1 cut(s)	979
MscI	TGGCCA	1 cut(s)	516
MseI	TTAA	4 cut(s)	470, 546, 663, 863
MslI	CAYNNNNRTG	1 cut(s)	933
Msp20I	TGGCCA	1 cut(s)	516
MspI	CCGG	3 cut(s)	405, 462, 591
MspR9I	CCNGG	2 cut(s)	462, 591
Mva1269I	GAATGC	1 cut(s)	754
MwoI	GCNNNNNNNGC	4 cut(s)	35, 323, 386, 739
NciI	CCSGG	2 cut(s)	462, 591
NdeII	GATC	6 cut(s)	171, 188, 586, 846, 904, 951
NlaIII	CATG	1 cut(s)	661
NlaIV	GGNNCC	3 cut(s)	460, 741, 906
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	1 cut(s)	979
NspI	RCATGY	1 cut(s)	661
PciI	ACATGT	1 cut(s)	657
PctI	GAATGC	1 cut(s)	754
PflFI	GACNNNGTC	1 cut(s)	104
PflMI	CCANNNNNTGG	1 cut(s)	898
PkrI	GCNGC	3 cut(s)	114, 388, 627
PleI	GAGTC	3 cut(s)	44, 766, 792
PpsI	GAGTC	3 cut(s)	44, 766, 792
PscI	ACATGT	1 cut(s)	657
PspFI	CCCAGC	1 cut(s)	345
PspN4I	GGNNCC	3 cut(s)	460, 741, 906
PspPI	GGNCC	1 cut(s)	458
PsuI	RGATCY	4 cut(s)	171, 586, 904, 951
PsyI	GACNNNGTC	1 cut(s)	104
RsaI	GTAC	3 cut(s)	652, 775, 881
RsaNI	GTAC	3 cut(s)	651, 774, 880
RseI	CAYNNNNRTG	1 cut(s)	933
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	4 cut(s)	470, 546, 663, 863
SatI	GCNGC	3 cut(s)	113, 387, 626
Sau3AI	GATC	6 cut(s)	171, 188, 586, 846, 904, 951
Sau96I	GGNCC	1 cut(s)	458
SchI	GAGTC	3 cut(s)	44, 767, 793
ScrFI	CCNGG	2 cut(s)	462, 591
SduI	GDGCHC	3 cut(s)	169, 378, 431
SfaNI	GCATC	1 cut(s)	925
SmiMI	CAYNNNNRTG	1 cut(s)	933
Sse9I	AATT	4 cut(s)	249, 301, 606, 817
SsiI	CCGC	7 cut(s)	124, 324, 353, 378, 384, 387, 395
StyD4I	CCNGG	2 cut(s)	460, 589
StyI	CCWWGG	3 cut(s)	420, 530, 735
TaaI	ACNGT	2 cut(s)	555, 650
TaiI	ACGT	2 cut(s)	105, 1006
TaqI	TCGA	2 cut(s)	135, 702
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	4 cut(s)	249, 301, 606, 817
TatI	WGTACW	3 cut(s)	650, 773, 879
TauI	GCSGC	1 cut(s)	389
Tru1I	TTAA	4 cut(s)	470, 546, 663, 863
Tru9I	TTAA	4 cut(s)	470, 546, 663, 863
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	2 cut(s)	112, 625
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	148, 683
Tth111I	GACNNNGTC	1 cut(s)	104
Van91I	CCANNNNNTGG	1 cut(s)	898
XapI	RAATTY	2 cut(s)	249, 817
XceI	RCATGY	1 cut(s)	661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	976
XmiI	GTMKAC	1 cut(s)	135
ZraI	GACGTC	1 cut(s)	103
Zsp2I	ATGCAT	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.