Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0012597

Physical Location & Seq

Genomic Coordinates Forward (+)

29929678 .. 29932676

Gene Structure 2999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00024090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGACAGAGCAAGAGATATCGCAAGCTTTAGAAGCCCTGATCCACGCCTCCGACGCCCCGACGTTCGCCACTCTAAACGACGTCGTGCAGCAGCTCGAGTCCAAGCTCGGCGGCCACGACCTCTCCCACAAGGCCGACTTCATTCGGTCCCAGATCCACTACCTTCTCCAATCCCACCCACCACCAACTCCCCCTCCTCCTCCCCAGCCTCAGCCTCCTAAAGACCACTTTGCCCTCCAGCAAAACCCCAATTACCACCCGCCTCCCTCCGCCTTCCAGACCTTCGCCTCCCACCCTCCTCAACTTCCTTCTCCCAAGTCCAAGCCCAAGCCCGAGCCCAGCACTACTCCCGTACCCGCATCCGTTTCCGCCTCCGACCCGCCGCCCAAAGATGGCGCTAAACCTAAACCAAAGAGAAAAGGAGGCCCAGGGGGTCTAAACAAACTTTGTGGTGTTTCCCCTGAACTACAGGTCATTGTTGGCCATCCAACTCTTCCAAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGAAAACACAACCTCCAAGACCCCGGTAACAAGAGGAAAATTATTTGCAATGATGAGCTGCGGTTGGTTTTCGAGACAGACTGTACTGATATGTTTAAGATGAACAAATTGCTGGCTAAACATATCATTGCACTTGAACCTTCAAAACAGCCAGTTCCCAAGAAGCCCAAGGTTGTCGCGGACTCTGGAACAAAGAGTTCCCAGTCAGGTCCTTCTGTGATAATATCTGAAGCACTTGCAAATTTTTTTGGTGTTGGCGGGAGGGAGATGCTCCAGTCTGAGGTTTTGCAACGAATATGGGAATACATAAAGGTCAACCGTCTGGAGGATCCTCTGAATCCAATGGCTATTCTATGTGATGCAAAGCTTCAAGATATCTTTGGTTGTGAAAGCATCTCTGCATTGGGAATACCCGAAGTGTTGGCACGTCATCACATATTCAGGAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

329

Amino Acids

36.16

Weight (kDa)

8.97

Isoelectric Point (pI)

71.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	3 - 56	1.9e-09	DEK C terminal domain
SWIB	PF02201	150 - 221	4.6e-27	SWIB/MDM2 domain
SWIB	PF02201	252 - 323	3.4e-20	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30330
malus_domestica	MD03G1190700.v1.1 MD11G1207400.v1.1
prunus_persica	Prupe.4G228000_v2.0.a1
pyrus_communis	pycom03g14390 pycom11g18060
rosa_chinensis	RchiOBHm_Chr5g0056201
rosa_laevigata	RLG00000035063
rosa_multiflora	Rmu_co7981676.1_g000001 Rmu_sc0000680.1_g000024
rosa_roxburghii	Rroxscaffold_1G00024090
rosa_rugosa	Rorug05G0298000 Rorug05G0298100
rosa_samantha	Rh5AG369100 Rh5BG380200 Rh5CG403000 Rh5DG393200
rosa_wichuraiana	Rw0G004420 Rw0G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccII	CGCG	1 cut(s)	716
AclWI	GGATC	4 cut(s)	37, 151, 860, 873
AcoI	YGGCCR	2 cut(s)	115, 484
AcsI	RAATTY	1 cut(s)	778
AcuI	CTGAAG	1 cut(s)	786
AcyI	GRCGYC	2 cut(s)	57, 84
AfaI	GTAC	2 cut(s)	357, 622
AfiI	CCNNNNNNNGG	3 cut(s)	395, 817, 862
AgsI	TTSAA	3 cut(s)	674, 681, 908
AjiI	CACGTC	1 cut(s)	965
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	5 cut(s)	29, 97, 109, 595, 904
AluI	AGCT	5 cut(s)	29, 97, 109, 595, 904
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	4 cut(s)	37, 151, 860, 873
Ama87I	CYCGRG	2 cut(s)	98, 335
AoxI	GGCC	4 cut(s)	115, 135, 427, 484
ApeKI	GCWGC	3 cut(s)	91, 94, 595
ApoI	RAATTY	1 cut(s)	778
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	3 cut(s)	150, 428, 746
AsuC2I	CCSGG	1 cut(s)	561
AvaI	CYCGRG	2 cut(s)	98, 335
AvaII	GGWCC	2 cut(s)	150, 746
BaeI	ACNNNNGTAYC	2 cut(s)	339, 372
BalI	TGGCCA	1 cut(s)	486
BamHI	GGATCC	1 cut(s)	865
BanII	GRGCYC	1 cut(s)	342
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	3 cut(s)	103, 106, 582
BccI	CCATC	2 cut(s)	389, 495
BciT130I	CCWGG	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	561
BcoDI	GTCTC	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	470
BfoI	RGCGCY	1 cut(s)	402
BisI	GCNGC	5 cut(s)	92, 95, 115, 386, 596
BlsI	GCNGC	5 cut(s)	93, 96, 116, 387, 597
Bme1390I	CCNGG	2 cut(s)	432, 561
Bme18I	GGWCC	2 cut(s)	150, 746
BmeT110I	CYCGRG	2 cut(s)	98, 335
BmgBI	CACGTC	1 cut(s)	965
BmgT120I	GGNCC	3 cut(s)	150, 428, 746
BmiI	GGNNCC	2 cut(s)	152, 867
BmrFI	CCNGG	2 cut(s)	432, 561
BmrI	ACTGGG	1 cut(s)	733
BmsI	GCATC	4 cut(s)	371, 795, 886, 939
BmuI	ACTGGG	1 cut(s)	733
BpmI	CTGGAG	3 cut(s)	224, 794, 881
Bpu10I	CCTNAGC	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	561
BsaHI	GRCGYC	2 cut(s)	57, 84
BsaJI	CCNNGG	5 cut(s)	430, 431, 500, 559, 705
BsaXI	ACNNNNNCTCC	6 cut(s)	110, 140, 181, 211, 534, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	395, 817, 862
Bse1I	ACTGG	3 cut(s)	689, 739, 811
Bse3DI	GCAATG	2 cut(s)	592, 663
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	5 cut(s)	430, 431, 500, 559, 705
BseGI	GGATG	2 cut(s)	362, 487
BseLI	CCNNNNNNNGG	3 cut(s)	395, 817, 862
BseMI	GCAATG	2 cut(s)	592, 663
BseMII	CTCAG	3 cut(s)	227, 498, 807
BseNI	ACTGG	3 cut(s)	689, 739, 811
BseRI	GAGGAG	3 cut(s)	189, 192, 291
BseXI	GCAGC	3 cut(s)	103, 106, 582
BseYI	CCCAGC	2 cut(s)	207, 341
BsgI	GTGCAG	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	716
BshFI	GGCC	4 cut(s)	117, 137, 429, 486
BsiHKCI	CYCGRG	2 cut(s)	98, 335
BsiSI	CCGG	1 cut(s)	561
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	3 cut(s)	395, 817, 862
BsmAI	GTCTC	1 cut(s)	605
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	4 cut(s)	117, 137, 429, 486
BsoBI	CYCGRG	2 cut(s)	98, 335
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	42, 156, 865, 983
BspANI	GGCC	4 cut(s)	117, 137, 429, 486
BspCNI	CTCAG	3 cut(s)	226, 499, 808
BspFNI	CGCG	1 cut(s)	716
BspHI	TCATGA	1 cut(s)	986
BspLI	GGNNCC	2 cut(s)	152, 867
BspPI	GGATC	4 cut(s)	37, 151, 860, 873
BsrDI	GCAATG	2 cut(s)	592, 663
BsrI	ACTGG	3 cut(s)	689, 739, 811
BssECI	CCNNGG	5 cut(s)	430, 431, 500, 559, 705
BssMI	GATC	4 cut(s)	42, 156, 865, 983
BssNI	GRCGYC	2 cut(s)	57, 84
BssT1I	CCWWGG	2 cut(s)	500, 705
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	3 cut(s)	525, 620, 857
Bst6I	CTCTTC	1 cut(s)	501
BstACI	GRCGYC	2 cut(s)	57, 84
BstC8I	GCNNGC	2 cut(s)	27, 651
BstDEI	CTNAG	3 cut(s)	213, 507, 816
BstF5I	GGATG	2 cut(s)	362, 487
BstFNI	CGCG	1 cut(s)	716
BstH2I	RGCGCY	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	4 cut(s)	45, 159, 868, 986
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	4 cut(s)	42, 156, 865, 983
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 56
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	2 cut(s)	430, 559
BstSFI	CTRYAG	1 cut(s)	470
BstUI	CGCG	1 cut(s)	716
BstV1I	GCAGC	3 cut(s)	103, 106, 582
BstX2I	RGATCY	2 cut(s)	156, 865
BstYI	RGATCY	2 cut(s)	156, 865
BsuRI	GGCC	4 cut(s)	117, 137, 429, 486
BtrI	CACGTC	1 cut(s)	965
BtsCI	GGATG	2 cut(s)	362, 487
Cac8I	GCNNGC	2 cut(s)	27, 651
CciI	TCATGA	1 cut(s)	986
CfoI	GCGC	1 cut(s)	401
Cfr13I	GGNCC	3 cut(s)	150, 428, 746
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	356, 621
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	1 cut(s)	987
CviQI	GTAC	2 cut(s)	356, 621
DdeI	CTNAG	3 cut(s)	213, 507, 816
DpnI	GATC	4 cut(s)	44, 158, 867, 985
DpnII	GATC	4 cut(s)	42, 156, 865, 983
EaeI	YGGCCR	2 cut(s)	115, 484
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
EciI	GGCGGA	2 cut(s)	262, 361
Eco130I	CCWWGG	2 cut(s)	500, 705
Eco24I	GRGCYC	1 cut(s)	342
Eco32I	GATATC	2 cut(s)	21, 913
Eco47I	GGWCC	2 cut(s)	150, 746
Eco57I	CTGAAG	1 cut(s)	786
Eco88I	CYCGRG	2 cut(s)	98, 335
EcoO109I	RGGNCCY	1 cut(s)	746
EcoRII	CCWGG	1 cut(s)	430
EcoRV	GATATC	2 cut(s)	21, 913
EcoT14I	CCWWGG	2 cut(s)	500, 705
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	2 cut(s)	500, 705
FaeI	CATG	1 cut(s)	990
FaiI	YATR	8 cut(s)	536, 629, 660, 835, 845, 892, 974, 988
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	1 cut(s)	986
FauI	CCCGC	4 cut(s)	270, 367, 390, 788
Fnu4HI	GCNGC	5 cut(s)	92, 95, 115, 386, 596
FokI	GGATG	2 cut(s)	349, 474
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	5 cut(s)	92, 95, 115, 386, 596
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	5 cut(s)	92, 95, 115, 386, 596
GsaI	CCCAGC	2 cut(s)	211, 345
GsuI	CTGGAG	3 cut(s)	224, 794, 881
HaeII	RGCGCY	1 cut(s)	402
HaeIII	GGCC	4 cut(s)	117, 137, 429, 486
HapII	CCGG	1 cut(s)	561
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	2 cut(s)	57, 84
Hin1II	CATG	1 cut(s)	990
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HindIII	AAGCTT	2 cut(s)	27, 902
HinfI	GANTC	3 cut(s)	101, 719, 874
HpaII	CCGG	1 cut(s)	561
Hpy166II	GTNNAC	1 cut(s)	853
Hpy188I	TCNGA	5 cut(s)	55, 379, 766, 817, 873
Hpy188III	TCNNGA	7 cut(s)	280, 610, 723, 860, 908, 979, 987
Hpy8I	GTNNAC	1 cut(s)	853
Hpy99I	CGWCG	4 cut(s)	59, 67, 86, 89
HpyAV	CCTTC	6 cut(s)	176, 286, 295, 321, 687, 759
HpyCH4III	ACNGT	3 cut(s)	525, 620, 857
HpyCH4IV	ACGT	3 cut(s)	65, 84, 964
HpyCH4V	TGCA	7 cut(s)	91, 585, 668, 776, 826, 899, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 56
HpyF3I	CTNAG	3 cut(s)	213, 507, 816
HpySE526I	ACGT	3 cut(s)	65, 84, 964
Hsp92I	GRCGYC	2 cut(s)	57, 84
Hsp92II	CATG	1 cut(s)	990
HspAI	GCGC	1 cut(s)	399
Kzo9I	GATC	4 cut(s)	42, 156, 865, 983
LmnI	GCTCC	1 cut(s)	813
Lsp1109I	GCAGC	3 cut(s)	103, 106, 582
LweI	GCATC	4 cut(s)	371, 795, 886, 939
MaeII	ACGT	3 cut(s)	65, 84, 964
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	4 cut(s)	44, 158, 867, 985
MboI	GATC	4 cut(s)	42, 156, 865, 983
MboII	GAAGA	1 cut(s)	488
MflI	RGATCY	2 cut(s)	156, 865
MhlI	GDGCHC	1 cut(s)	342
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	4 cut(s)	253, 576, 644, 778
MluNI	TGGCCA	1 cut(s)	486
MlyI	GAGTC	2 cut(s)	110, 713
MmeI	TCCRAC	3 cut(s)	78, 402, 515
Mox20I	TGGCCA	1 cut(s)	486
MscI	TGGCCA	1 cut(s)	486
MseI	TTAA	1 cut(s)	633
Msp20I	TGGCCA	1 cut(s)	486
MspI	CCGG	1 cut(s)	561
MspR9I	CCNGG	2 cut(s)	432, 561
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	716
MwoI	GCNNNNNNNGC	2 cut(s)	35, 56
NciI	CCSGG	1 cut(s)	561
NdeII	GATC	4 cut(s)	42, 156, 865, 983
NlaIII	CATG	1 cut(s)	990
NlaIV	GGNNCC	2 cut(s)	152, 867
NmeAIII	GCCGAG	1 cut(s)	90
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	986
PasI	CCCWGGG	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	874
PkrI	GCNGC	5 cut(s)	93, 96, 116, 387, 597
PleI	GAGTC	2 cut(s)	109, 713
PpsI	GAGTC	2 cut(s)	109, 713
PpuMI	RGGWCCY	1 cut(s)	746
Psp5II	RGGWCCY	1 cut(s)	746
Psp6I	CCWGG	1 cut(s)	430
PspFI	CCCAGC	2 cut(s)	207, 341
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	152, 867
PspPI	GGNCC	3 cut(s)	150, 428, 746
PspPPI	RGGWCCY	1 cut(s)	746
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	156, 865
RsaI	GTAC	2 cut(s)	357, 622
RsaNI	GTAC	2 cut(s)	356, 621
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	5 cut(s)	92, 95, 115, 386, 596
Sau3AI	GATC	4 cut(s)	42, 156, 865, 983
Sau96I	GGNCC	3 cut(s)	150, 428, 746
SchI	GAGTC	2 cut(s)	110, 713
ScrFI	CCNGG	2 cut(s)	432, 561
SduI	GDGCHC	1 cut(s)	342
SfaNI	GCATC	4 cut(s)	371, 795, 886, 939
SfcI	CTRYAG	1 cut(s)	470
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	2 cut(s)	150, 746
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	4 cut(s)	253, 576, 644, 778
StyD4I	CCNGG	2 cut(s)	430, 559
StyI	CCWWGG	2 cut(s)	500, 705
TaaI	ACNGT	3 cut(s)	525, 620, 857
TaiI	ACGT	3 cut(s)	68, 87, 967
TaqI	TCGA	2 cut(s)	99, 609
TaqII	GACCGA	1 cut(s)	138
TasI	AATT	4 cut(s)	253, 576, 644, 778
TatI	WGTACW	1 cut(s)	620
TauI	GCSGC	2 cut(s)	117, 388
TfiI	GAWTC	1 cut(s)	874
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TseI	GCWGC	3 cut(s)	91, 94, 595
TspDTI	ATGAA	2 cut(s)	133, 653
TspGWI	ACGGA	1 cut(s)	355
VpaK11BI	GGWCC	2 cut(s)	150, 746
XapI	RAATTY	1 cut(s)	778
XhoI	CTCGAG	1 cut(s)	98
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.