Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012597

Physical Location & Seq

Genomic Coordinates Reverse (-)

60053902 .. 60057195

Gene Structure 3294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035063

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCGACAGAGCAAGAGATATCGCAAGCTTTAGAAGCCCTGATCCACGCCTCCGACGCGCCGACGTTCGCCACTCTAAACGACGTCGTGCAGCAGCTCGAGTCCAAGCTCGGCGGCCACGACCTCTCCCACAAGGCCGACTTCATTCGGTCCCAGATCCACTACCTTCTCCAATCCCGCCCACCACCAACTCCCCCTCCTCCCCAGCCTCAGCCTCAACCTCCTAAAGACCATTTTGCCCTCCAGCAAAACCCCAATTACCACCCGCCTACCTCCGCCTTCCAGACCTTTGCCTCCCACCCTCCTCAACTTCCTTCTCCCAAGACCGAGCCCGAGCCCGAGCCCAGCACTACTCCCGTACCCGCATCCGTTTCCGCCTCCGACCCGCCGCCTAAGGATGGCGCTAAACCTAAACCAAAGAGAAAAGGAGGCCCAGGGGGTCTAAACAAACTTTGTGGTGTTTCGCCTGAACTACAGGTCATTGTTGGCCATCCAACTCTTCCAAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGAAAACACAACCTCCAAGACCCCGGCAACAAGAGGAAAATTATTTGCAATGATGAGCTGCGGTTGGTTTTCGAGACAGACTGTACTGATATGTTTAAGATGAACAAATTGCTGGCTAAACATATCATTGCACTTGAACCTTCAAAACAGCCAGTTCCCAAGAAGCCCAAGGTTGTCGCAGACTCTGGAACAAAGAGTTCCCAGTCAGGTCCTTCTGTGATAATATCTGAAGCACTTGCAAATTTTTTTGGTGTTGGTGGGAGGGAGATGCTCCAGTCTGAGGTTTTGCAACGAATATGGGAATACATAAAGGTCAACCGTCTGGAGGATCCTCTGAATCCAATGGCTATTCTATGTGATGCGAAGCTTCAAGATATCTTTGGAGATCATGATAGTTGTAGGTCTACGACGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

319

Amino Acids

35.05

Weight (kDa)

7.7

Isoelectric Point (pI)

73.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	3 - 56	1.8e-09	DEK C terminal domain
SWIB	PF02201	151 - 222	4.4e-27	SWIB/MDM2 domain
SWIB	PF02201	253 - 314	1.2e-16	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30330
malus_domestica	MD03G1190700.v1.1 MD11G1207400.v1.1
prunus_persica	Prupe.4G228000_v2.0.a1
pyrus_communis	pycom03g14390 pycom11g18060
rosa_chinensis	RchiOBHm_Chr5g0056201
rosa_laevigata	RLG00000035063
rosa_multiflora	Rmu_co7981676.1_g000001 Rmu_sc0000680.1_g000024
rosa_roxburghii	Rroxscaffold_1G00024090
rosa_rugosa	Rorug05G0298000 Rorug05G0298100
rosa_samantha	Rh5AG369100 Rh5BG380200 Rh5CG403000 Rh5DG393200
rosa_wichuraiana	Rw0G004420 Rw0G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccI	GTMKAC	1 cut(s)	944
AccII	CGCG	1 cut(s)	59
AciI	CCGC	9 cut(s)	114, 178, 266, 276, 363, 375, 386, 389, 601
AclWI	GGATC	4 cut(s)	37, 151, 863, 876
AcoI	YGGCCR	2 cut(s)	115, 487
AcsI	RAATTY	1 cut(s)	781
AcuI	CTGAAG	1 cut(s)	789
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	2 cut(s)	360, 625
AfiI	CCNNNNNNNGG	3 cut(s)	398, 820, 865
AgsI	TTSAA	3 cut(s)	677, 684, 911
AjiI	CACGTC	1 cut(s)	951
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	5 cut(s)	29, 97, 109, 598, 907
AluI	AGCT	5 cut(s)	29, 97, 109, 598, 907
Alw26I	GTCTC	1 cut(s)	608
AlwI	GGATC	4 cut(s)	37, 151, 863, 876
AlwNI	CAGNNNCTG	1 cut(s)	725
Ama87I	CYCGRG	3 cut(s)	98, 332, 338
AoxI	GGCC	4 cut(s)	115, 135, 430, 487
ApeKI	GCWGC	3 cut(s)	91, 94, 598
ApoI	RAATTY	1 cut(s)	781
AspLEI	GCGC	2 cut(s)	61, 404
AspS9I	GGNCC	3 cut(s)	150, 431, 749
AsuC2I	CCSGG	1 cut(s)	564
AvaI	CYCGRG	3 cut(s)	98, 332, 338
AvaII	GGWCC	2 cut(s)	150, 749
AxyI	CCTNAGG	1 cut(s)	393
BaeI	ACNNNNGTAYC	2 cut(s)	342, 375
BalI	TGGCCA	1 cut(s)	489
BamHI	GGATCC	1 cut(s)	868
BanII	GRGCYC	3 cut(s)	333, 339, 345
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	103, 106, 585
BccI	CCATC	2 cut(s)	392, 498
BciT130I	CCWGG	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	473
BfoI	RGCGCY	1 cut(s)	405
BisI	GCNGC	5 cut(s)	92, 95, 115, 389, 599
BlsI	GCNGC	5 cut(s)	93, 96, 116, 390, 600
Bme1390I	CCNGG	2 cut(s)	435, 564
Bme18I	GGWCC	2 cut(s)	150, 749
BmeT110I	CYCGRG	3 cut(s)	98, 332, 338
BmgBI	CACGTC	1 cut(s)	951
BmgT120I	GGNCC	3 cut(s)	150, 431, 749
BmiI	GGNNCC	2 cut(s)	152, 870
BmrFI	CCNGG	2 cut(s)	435, 564
BmrI	ACTGGG	1 cut(s)	736
BmsI	GCATC	3 cut(s)	374, 798, 889
BmuI	ACTGGG	1 cut(s)	736
BpmI	CTGGAG	3 cut(s)	227, 797, 884
Bpu10I	CCTNAGC	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	5 cut(s)	433, 434, 503, 562, 708
BsaXI	ACNNNNNCTCC	6 cut(s)	110, 140, 181, 211, 537, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 820, 865
Bse1I	ACTGG	3 cut(s)	692, 742, 814
Bse21I	CCTNAGG	1 cut(s)	393
Bse3DI	GCAATG	2 cut(s)	595, 666
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	5 cut(s)	433, 434, 503, 562, 708
BseGI	GGATG	3 cut(s)	365, 403, 490
BseLI	CCNNNNNNNGG	3 cut(s)	398, 820, 865
BseMI	GCAATG	2 cut(s)	595, 666
BseMII	CTCAG	3 cut(s)	224, 501, 810
BseNI	ACTGG	3 cut(s)	692, 742, 814
BseRI	GAGGAG	2 cut(s)	189, 294
BseXI	GCAGC	3 cut(s)	103, 106, 585
BseYI	CCCAGC	2 cut(s)	204, 344
BsgI	GTGCAG	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	4 cut(s)	117, 137, 432, 489
BsiHKCI	CYCGRG	3 cut(s)	98, 332, 338
BsiSI	CCGG	1 cut(s)	564
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	3 cut(s)	398, 820, 865
BsmAI	GTCTC	1 cut(s)	608
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	4 cut(s)	117, 137, 432, 489
BsoBI	CYCGRG	3 cut(s)	98, 332, 338
Bsp1286I	GDGCHC	3 cut(s)	333, 339, 345
Bsp143I	GATC	4 cut(s)	42, 156, 868, 925
BspACI	CCGC	9 cut(s)	114, 178, 266, 276, 363, 375, 386, 389, 601
BspANI	GGCC	4 cut(s)	117, 137, 432, 489
BspCNI	CTCAG	3 cut(s)	223, 502, 811
BspFNI	CGCG	1 cut(s)	59
BspHI	TCATGA	1 cut(s)	928
BspLI	GGNNCC	2 cut(s)	152, 870
BspPI	GGATC	4 cut(s)	37, 151, 863, 876
BsrDI	GCAATG	2 cut(s)	595, 666
BsrI	ACTGG	3 cut(s)	692, 742, 814
BssECI	CCNNGG	5 cut(s)	433, 434, 503, 562, 708
BssMI	GATC	4 cut(s)	42, 156, 868, 925
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	503, 708
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	3 cut(s)	528, 623, 860
Bst6I	CTCTTC	1 cut(s)	504
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	27, 654
BstDEI	CTNAG	4 cut(s)	210, 393, 510, 819
BstF5I	GGATG	3 cut(s)	365, 403, 490
BstFNI	CGCG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	2 cut(s)	61, 404
BstKTI	GATC	4 cut(s)	45, 159, 871, 928
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	4 cut(s)	42, 156, 868, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 56
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	2 cut(s)	433, 562
BstSFI	CTRYAG	1 cut(s)	473
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	3 cut(s)	103, 106, 585
BstX2I	RGATCY	2 cut(s)	156, 868
BstYI	RGATCY	2 cut(s)	156, 868
Bsu36I	CCTNAGG	1 cut(s)	393
BsuRI	GGCC	4 cut(s)	117, 137, 432, 489
BtrI	CACGTC	1 cut(s)	951
BtsCI	GGATG	3 cut(s)	365, 403, 490
Cac8I	GCNNGC	2 cut(s)	27, 654
CaiI	CAGNNNCTG	1 cut(s)	725
CciI	TCATGA	1 cut(s)	928
CfoI	GCGC	2 cut(s)	61, 404
Cfr13I	GGNCC	3 cut(s)	150, 431, 749
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	359, 624
CspCI	CAANNNNNGTGG	2 cut(s)	436, 471
CviAII	CATG	1 cut(s)	929
CviQI	GTAC	2 cut(s)	359, 624
DdeI	CTNAG	4 cut(s)	210, 393, 510, 819
DpnI	GATC	4 cut(s)	44, 158, 870, 927
DpnII	GATC	4 cut(s)	42, 156, 868, 925
EaeI	YGGCCR	2 cut(s)	115, 487
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	2 cut(s)	265, 364
Eco130I	CCWWGG	2 cut(s)	503, 708
Eco24I	GRGCYC	3 cut(s)	333, 339, 345
Eco32I	GATATC	2 cut(s)	21, 916
Eco47I	GGWCC	2 cut(s)	150, 749
Eco57I	CTGAAG	1 cut(s)	789
Eco81I	CCTNAGG	1 cut(s)	393
Eco88I	CYCGRG	3 cut(s)	98, 332, 338
EcoO109I	RGGNCCY	1 cut(s)	749
EcoRII	CCWGG	1 cut(s)	433
EcoRV	GATATC	2 cut(s)	21, 916
EcoT14I	CCWWGG	2 cut(s)	503, 708
EcoT38I	GRGCYC	3 cut(s)	333, 339, 345
ErhI	CCWWGG	2 cut(s)	503, 708
FaeI	CATG	1 cut(s)	932
FaiI	YATR	7 cut(s)	539, 632, 663, 838, 848, 895, 930
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	1 cut(s)	928
FauI	CCCGC	4 cut(s)	185, 273, 370, 393
FblI	GTMKAC	1 cut(s)	944
Fnu4HI	GCNGC	5 cut(s)	92, 95, 115, 389, 599
FokI	GGATG	3 cut(s)	352, 410, 477
FriOI	GRGCYC	3 cut(s)	333, 339, 345
Fsp4HI	GCNGC	5 cut(s)	92, 95, 115, 389, 599
GlaI	GCGC	2 cut(s)	60, 403
GluI	GCNGC	5 cut(s)	92, 95, 115, 389, 599
GsaI	CCCAGC	2 cut(s)	208, 348
GsuI	CTGGAG	3 cut(s)	227, 797, 884
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	4 cut(s)	117, 137, 432, 489
HapII	CCGG	1 cut(s)	564
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	2 cut(s)	61, 404
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	932
Hin6I	GCGC	2 cut(s)	59, 402
HinP1I	GCGC	2 cut(s)	59, 402
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HindIII	AAGCTT	2 cut(s)	27, 905
HinfI	GANTC	3 cut(s)	101, 722, 877
HpaII	CCGG	1 cut(s)	564
Hpy166II	GTNNAC	2 cut(s)	856, 945
Hpy188I	TCNGA	5 cut(s)	55, 382, 769, 820, 876
Hpy188III	TCNNGA	6 cut(s)	283, 613, 726, 863, 911, 929
Hpy8I	GTNNAC	2 cut(s)	856, 945
Hpy99I	CGWCG	5 cut(s)	59, 67, 86, 89, 952
HpyAV	CCTTC	5 cut(s)	176, 289, 324, 690, 762
HpyCH4III	ACNGT	3 cut(s)	528, 623, 860
HpyCH4IV	ACGT	3 cut(s)	65, 84, 950
HpyCH4V	TGCA	5 cut(s)	91, 588, 671, 779, 829
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 56
HpyF3I	CTNAG	4 cut(s)	210, 393, 510, 819
HpySE526I	ACGT	3 cut(s)	65, 84, 950
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	932
HspAI	GCGC	2 cut(s)	59, 402
Kzo9I	GATC	4 cut(s)	42, 156, 868, 925
LmnI	GCTCC	1 cut(s)	816
Lsp1109I	GCAGC	3 cut(s)	103, 106, 585
LweI	GCATC	3 cut(s)	374, 798, 889
MaeII	ACGT	3 cut(s)	65, 84, 950
MalI	GATC	4 cut(s)	44, 158, 870, 927
MboI	GATC	4 cut(s)	42, 156, 868, 925
MboII	GAAGA	1 cut(s)	491
MflI	RGATCY	2 cut(s)	156, 868
MhlI	GDGCHC	3 cut(s)	333, 339, 345
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	4 cut(s)	256, 579, 647, 781
MluNI	TGGCCA	1 cut(s)	489
MlyI	GAGTC	2 cut(s)	110, 716
MmeI	TCCRAC	3 cut(s)	78, 405, 518
Mox20I	TGGCCA	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	1 cut(s)	636
Msp20I	TGGCCA	1 cut(s)	489
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	2 cut(s)	435, 564
MvaI	CCWGG	1 cut(s)	435
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	35, 56
NciI	CCSGG	1 cut(s)	564
NdeII	GATC	4 cut(s)	42, 156, 868, 925
NlaIII	CATG	1 cut(s)	932
NlaIV	GGNNCC	2 cut(s)	152, 870
NmeAIII	GCCGAG	1 cut(s)	90
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	928
PasI	CCCWGGG	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	877
PkrI	GCNGC	5 cut(s)	93, 96, 116, 390, 600
PleI	GAGTC	2 cut(s)	109, 716
PpsI	GAGTC	2 cut(s)	109, 716
PpuMI	RGGWCCY	1 cut(s)	749
Psp5II	RGGWCCY	1 cut(s)	749
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	2 cut(s)	204, 344
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	2 cut(s)	152, 870
PspPI	GGNCC	3 cut(s)	150, 431, 749
PspPPI	RGGWCCY	1 cut(s)	749
PspXI	VCTCGAGB	1 cut(s)	98
PstNI	CAGNNNCTG	1 cut(s)	725
PsuI	RGATCY	2 cut(s)	156, 868
RsaI	GTAC	2 cut(s)	360, 625
RsaNI	GTAC	2 cut(s)	359, 624
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	5 cut(s)	92, 95, 115, 389, 599
Sau3AI	GATC	4 cut(s)	42, 156, 868, 925
Sau96I	GGNCC	3 cut(s)	150, 431, 749
SchI	GAGTC	2 cut(s)	110, 716
ScrFI	CCNGG	2 cut(s)	435, 564
SduI	GDGCHC	3 cut(s)	333, 339, 345
SfaNI	GCATC	3 cut(s)	374, 798, 889
SfcI	CTRYAG	1 cut(s)	473
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	2 cut(s)	150, 749
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	4 cut(s)	256, 579, 647, 781
SsiI	CCGC	9 cut(s)	114, 178, 266, 276, 363, 375, 386, 389, 601
StyD4I	CCNGG	2 cut(s)	433, 562
StyI	CCWWGG	2 cut(s)	503, 708
TaaI	ACNGT	3 cut(s)	528, 623, 860
TaiI	ACGT	3 cut(s)	68, 87, 953
TaqI	TCGA	2 cut(s)	99, 612
TaqII	GACCGA	2 cut(s)	138, 341
TasI	AATT	4 cut(s)	256, 579, 647, 781
TatI	WGTACW	1 cut(s)	623
TauI	GCSGC	2 cut(s)	117, 391
TfiI	GAWTC	1 cut(s)	877
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TseI	GCWGC	3 cut(s)	91, 94, 598
TspDTI	ATGAA	2 cut(s)	133, 656
TspGWI	ACGGA	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	150, 749
XapI	RAATTY	1 cut(s)	781
XhoI	CTCGAG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	944
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.