Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012597

Physical Location & Seq

Genomic Coordinates Forward (+)

14562831 .. 14566609

Gene Structure 3779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G228000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGTGACAGAACAAGAGATATCGCAAGCCTTACAAGCCCTAATCCACGACACCACTTCCAACCCAAACACCACCACCCCGACCTTCACCACGCTAAACGACGTCGTCCAGCAGCTAGAGTCCAGGCTAGGGCTTGACCTCTCCCACAAGACCGACTTCATTCGCACCCAGATCCACTACTTCTTCCGATCCCACCCACCAACTCCTCAGCCCCAACCCCAGCACCAACAACAACAACAACAACAACACCAACACCAACTACCTCAGCCTCAGCACCCAAAAGACCATTTTGCCCTCAACCAGCCCCCTAATTACCACCACCCCACTCCCTCCGCCTTCCAGACCTTCTCGTCCCAGCCCCCGCCTCCACTTCTCAAGCCTGAACCGGGCTCCGCCGCTCCTGTATCGGTTTCTGGCTCTAACACGCCCAAGGACAGCGCTAAACCTAAAGCTAAGAGAAAAGGTGGCCCAGGGGGTTTAAACAAACTTTGTGGTGTTTCACCTGAACTTCAGGTCATTGTTGGCCACCCAACTCTCCCAAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGGAAAAACAATCTCCAAGATCCTGGTAACAAGAGGAAAATTATTTGCAATGAGGAGCTCCGACTGGTTTTTGAGACAGACTGTACTGACATGTTTAAGATGAACAAGTTGCTTGCTAAACATATTATTGCACTTGAACCATCAAAACAGTCAGTTCCCAAGAAGCCCAAGGTGCCCAAGGTTGCCGTGGAGTCTAGAACGAAAAGTACTGAGCCGGGTCCTTCTCTAATAATATCTGAAGCACTTGCAAATTTTTTTGGTGTTGGTGCAAGGGAGATGCTCCAATCAGAGGTTTTAATGCGTATCTGGGAATACATAAAGGTGAACCATCTGGAGGATCCTCAAAATCCAATGGCTATACAATGTGATGCAAAGCTTCAAGAGATCTTTGGTTGTGAAAGCATCAGTGCATTGGAAATACCAGATATTTTGGAACGTCATCACATATTCAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

345

Amino Acids

38.75

Weight (kDa)

8.86

Isoelectric Point (pI)

63.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30330
malus_domestica	MD03G1190700.v1.1 MD11G1207400.v1.1
prunus_persica	Prupe.4G228000_v2.0.a1
pyrus_communis	pycom03g14390 pycom11g18060
rosa_chinensis	RchiOBHm_Chr5g0056201
rosa_laevigata	RLG00000035063
rosa_multiflora	Rmu_co7981676.1_g000001 Rmu_sc0000680.1_g000024
rosa_roxburghii	Rroxscaffold_1G00024090
rosa_rugosa	Rorug05G0298000 Rorug05G0298100
rosa_samantha	Rh5AG369100 Rh5BG380200 Rh5CG403000 Rh5DG393200
rosa_wichuraiana	Rw0G004420 Rw0G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
AatII	GACGTC	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	748
AccBSI	CCGCTC	1 cut(s)	398
AciI	CCGC	4 cut(s)	333, 362, 393, 396
AclWI	GGATC	5 cut(s)	166, 183, 590, 908, 921
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	1 cut(s)	826
AcuI	CTGAAG	2 cut(s)	494, 834
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	2 cut(s)	661, 784
AfeI	AGCGCT	1 cut(s)	439
AfiI	CCNNNNNNNGG	4 cut(s)	129, 386, 865, 910
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	2 cut(s)	713, 956
AjnI	CCWGG	3 cut(s)	122, 469, 598
AluBI	AGCT	4 cut(s)	115, 452, 634, 952
AluI	AGCT	4 cut(s)	115, 452, 634, 952
Alw21I	GWGCWC	1 cut(s)	636
Alw26I	GTCTC	1 cut(s)	644
AlwI	GGATC	5 cut(s)	166, 183, 590, 908, 921
Aor51HI	AGCGCT	1 cut(s)	439
AoxI	GGCC	2 cut(s)	466, 523
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	826
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	467, 794
AsuC2I	CCSGG	2 cut(s)	387, 792
AsuHPI	GGTGA	4 cut(s)	16, 79, 492, 910
AvaII	GGWCC	1 cut(s)	794
BaeGI	GKGCMC	1 cut(s)	753
BalI	TGGCCA	1 cut(s)	525
BamHI	GGATCC	1 cut(s)	913
BanI	GGYRCC	1 cut(s)	748
BanII	GRGCYC	2 cut(s)	392, 636
Bbv12I	GWGCWC	1 cut(s)	636
BbvCI	CCTCAGC	3 cut(s)	207, 264, 270
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	724, 912
BceAI	ACGGC	1 cut(s)	746
BciT130I	CCWGG	3 cut(s)	124, 471, 600
BcnI	CCSGG	2 cut(s)	387, 792
BcoDI	GTCTC	1 cut(s)	644
BfaI	CTAG	3 cut(s)	116, 128, 771
BfoI	RGCGCY	1 cut(s)	441
BglII	AGATCT	1 cut(s)	960
BisI	GCNGC	2 cut(s)	113, 396
BlsI	GCNGC	2 cut(s)	114, 397
BmcAI	AGTACT	1 cut(s)	784
Bme1390I	CCNGG	5 cut(s)	124, 387, 471, 600, 792
Bme18I	GGWCC	1 cut(s)	794
BmgT120I	GGNCC	2 cut(s)	467, 794
BmiI	GGNNCC	4 cut(s)	391, 750, 795, 915
BmrFI	CCNGG	5 cut(s)	124, 387, 471, 600, 792
BmsI	GCATC	3 cut(s)	843, 934, 987
BpmI	CTGGAG	1 cut(s)	929
Bpu10I	CCTNAGC	3 cut(s)	207, 264, 270
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	2 cut(s)	387, 792
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	7 cut(s)	429, 469, 470, 539, 744, 753, 762
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 386, 865, 910
Bse1I	ACTGG	1 cut(s)	645
Bse3DI	GCAATG	1 cut(s)	631
BseBI	CCWGG	3 cut(s)	124, 471, 600
BseDI	CCNNGG	7 cut(s)	429, 469, 470, 539, 744, 753, 762
BseLI	CCNNNNNNNGG	4 cut(s)	129, 386, 865, 910
BseMI	GCAATG	1 cut(s)	631
BseMII	CTCAG	5 cut(s)	221, 278, 284, 537, 777
BseNI	ACTGG	1 cut(s)	645
BseRI	GAGGAG	2 cut(s)	195, 644
BseSI	GKGCMC	1 cut(s)	753
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	2 cut(s)	219, 354
BshFI	GGCC	2 cut(s)	468, 525
BshNI	GGYRCC	1 cut(s)	748
BsiHKAI	GWGCWC	1 cut(s)	636
BsiSI	CCGG	2 cut(s)	386, 791
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	4 cut(s)	129, 386, 865, 910
BsmAI	GTCTC	1 cut(s)	644
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	468, 525
Bsp1286I	GDGCHC	3 cut(s)	392, 636, 753
Bsp143I	GATC	5 cut(s)	171, 188, 595, 913, 960
BspACI	CCGC	4 cut(s)	333, 362, 393, 396
BspANI	GGCC	2 cut(s)	468, 525
BspCNI	CTCAG	5 cut(s)	220, 277, 283, 538, 778
BspLI	GGNNCC	4 cut(s)	391, 750, 795, 915
BspPI	GGATC	5 cut(s)	166, 183, 590, 908, 921
BspT107I	GGYRCC	1 cut(s)	748
BsrBI	CCGCTC	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	631
BsrI	ACTGG	1 cut(s)	645
BssECI	CCNNGG	7 cut(s)	429, 469, 470, 539, 744, 753, 762
BssMI	GATC	5 cut(s)	171, 188, 595, 913, 960
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	4 cut(s)	429, 539, 744, 753
Bst2UI	CCWGG	3 cut(s)	124, 471, 600
Bst4CI	ACNGT	3 cut(s)	564, 659, 726
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	27, 690
BstDEI	CTNAG	6 cut(s)	207, 264, 270, 453, 546, 786
BstDSI	CCRYGG	1 cut(s)	762
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	5 cut(s)	174, 191, 598, 916, 963
BstMAI	GTCTC	1 cut(s)	644
BstMBI	GATC	5 cut(s)	171, 188, 595, 913, 960
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 748
BstNI	CCWGG	3 cut(s)	124, 471, 600
BstNSI	RCATGY	1 cut(s)	670
BstSCI	CCNGG	5 cut(s)	122, 385, 469, 598, 790
BstSLI	GKGCMC	1 cut(s)	753
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	4 cut(s)	171, 595, 913, 960
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstYI	RGATCY	4 cut(s)	171, 595, 913, 960
BsuRI	GGCC	2 cut(s)	468, 525
BtgI	CCRYGG	1 cut(s)	762
BtsIMutI	CAGTG	1 cut(s)	988
Cac8I	GCNNGC	2 cut(s)	27, 690
CfoI	GCGC	1 cut(s)	440
Cfr13I	GGNCC	2 cut(s)	467, 794
Csp6I	GTAC	2 cut(s)	660, 783
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	1 cut(s)	667
CviQI	GTAC	2 cut(s)	660, 783
DdeI	CTNAG	6 cut(s)	207, 264, 270, 453, 546, 786
DpnI	GATC	5 cut(s)	173, 190, 597, 915, 962
DpnII	GATC	5 cut(s)	171, 188, 595, 913, 960
DraI	TTTAAA	1 cut(s)	480
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	523
EciI	GGCGGA	2 cut(s)	322, 382
Ecl136II	GAGCTC	1 cut(s)	634
Eco130I	CCWWGG	4 cut(s)	429, 539, 744, 753
Eco24I	GRGCYC	2 cut(s)	392, 636
Eco32I	GATATC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	794
Eco47III	AGCGCT	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	634
Eco57I	CTGAAG	2 cut(s)	494, 834
EcoICRI	GAGCTC	1 cut(s)	634
EcoO109I	RGGNCCY	1 cut(s)	794
EcoRII	CCWGG	3 cut(s)	122, 469, 598
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	4 cut(s)	429, 539, 744, 753
EcoT38I	GRGCYC	2 cut(s)	392, 636
ErhI	CCWWGG	4 cut(s)	429, 539, 744, 753
FaeI	CATG	1 cut(s)	670
FaiI	YATR	6 cut(s)	575, 668, 699, 893, 935, 1022
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	1 cut(s)	666
FauI	CCCGC	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	113, 396
FriOI	GRGCYC	2 cut(s)	392, 636
Fsp4HI	GCNGC	2 cut(s)	113, 396
FspBI	CTAG	3 cut(s)	116, 128, 771
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	2 cut(s)	113, 396
GsaI	CCCAGC	2 cut(s)	223, 358
GsuI	CTGGAG	1 cut(s)	929
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	468, 525
HapII	CCGG	2 cut(s)	386, 791
HhaI	GCGC	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	670
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HindIII	AAGCTT	1 cut(s)	950
HinfI	GANTC	2 cut(s)	119, 767
HpaII	CCGG	2 cut(s)	386, 791
HphI	GGTGA	4 cut(s)	16, 79, 492, 910
Hpy166II	GTNNAC	1 cut(s)	901
Hpy188I	TCNGA	4 cut(s)	188, 638, 814, 865
Hpy188III	TCNNGA	5 cut(s)	340, 771, 908, 956, 1027
Hpy8I	GTNNAC	1 cut(s)	901
Hpy99I	CGWCG	2 cut(s)	104, 107
HpyAV	CCTTC	4 cut(s)	94, 346, 355, 807
HpyCH4III	ACNGT	3 cut(s)	564, 659, 726
HpyCH4IV	ACGT	2 cut(s)	102, 1012
HpyCH4V	TGCA	6 cut(s)	624, 707, 824, 845, 947, 986
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 748
HpyF3I	CTNAG	6 cut(s)	207, 264, 270, 453, 546, 786
HpySE526I	ACGT	2 cut(s)	102, 1012
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	670
HspAI	GCGC	1 cut(s)	438
Kzo9I	GATC	5 cut(s)	171, 188, 595, 913, 960
LmnI	GCTCC	5 cut(s)	395, 403, 631, 639, 861
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	3 cut(s)	843, 934, 987
MaeI	CTAG	3 cut(s)	116, 128, 771
MaeII	ACGT	2 cut(s)	102, 1012
MaeIII	GTNAC	2 cut(s)	4, 602
MalI	GATC	5 cut(s)	173, 190, 597, 915, 962
MbiI	CCGCTC	1 cut(s)	398
MboI	GATC	5 cut(s)	171, 188, 595, 913, 960
MboII	GAAGA	1 cut(s)	175
MflI	RGATCY	4 cut(s)	171, 595, 913, 960
MhlI	GDGCHC	3 cut(s)	392, 636, 753
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	3 cut(s)	310, 615, 826
MluNI	TGGCCA	1 cut(s)	525
MlyI	GAGTC	2 cut(s)	128, 776
MmeI	TCCRAC	2 cut(s)	84, 661
Mox20I	TGGCCA	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	3 cut(s)	479, 672, 872
MslI	CAYNNNNRTG	1 cut(s)	896
Msp20I	TGGCCA	1 cut(s)	525
MspI	CCGG	2 cut(s)	386, 791
MspR9I	CCNGG	5 cut(s)	124, 387, 471, 600, 792
MssI	GTTTAAAC	1 cut(s)	480
MvaI	CCWGG	3 cut(s)	124, 471, 600
MwoI	GCNNNNNNNGC	2 cut(s)	35, 748
NciI	CCSGG	2 cut(s)	387, 792
NdeII	GATC	5 cut(s)	171, 188, 595, 913, 960
NlaIII	CATG	1 cut(s)	670
NlaIV	GGNNCC	4 cut(s)	391, 750, 795, 915
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	1 cut(s)	670
PasI	CCCWGGG	1 cut(s)	470
PciI	ACATGT	1 cut(s)	666
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	114, 397
PleI	GAGTC	2 cut(s)	127, 775
PmeI	GTTTAAAC	1 cut(s)	480
PpsI	GAGTC	2 cut(s)	127, 775
PpuMI	RGGWCCY	1 cut(s)	794
PscI	ACATGT	1 cut(s)	666
Psp124BI	GAGCTC	1 cut(s)	636
Psp5II	RGGWCCY	1 cut(s)	794
Psp6I	CCWGG	3 cut(s)	122, 469, 598
PspFI	CCCAGC	2 cut(s)	219, 354
PspGI	CCWGG	3 cut(s)	122, 469, 598
PspN4I	GGNNCC	4 cut(s)	391, 750, 795, 915
PspPI	GGNCC	2 cut(s)	467, 794
PspPPI	RGGWCCY	1 cut(s)	794
PsrI	GAACNNNNNNTAC	2 cut(s)	766, 798
PsuI	RGATCY	4 cut(s)	171, 595, 913, 960
PsyI	GACNNNGTC	1 cut(s)	104
RsaI	GTAC	2 cut(s)	661, 784
RsaNI	GTAC	2 cut(s)	660, 783
RseI	CAYNNNNRTG	1 cut(s)	896
SacI	GAGCTC	1 cut(s)	636
SaqAI	TTAA	3 cut(s)	479, 672, 872
SatI	GCNGC	2 cut(s)	113, 396
Sau3AI	GATC	5 cut(s)	171, 188, 595, 913, 960
Sau96I	GGNCC	2 cut(s)	467, 794
ScaI	AGTACT	1 cut(s)	784
SchI	GAGTC	2 cut(s)	128, 776
ScrFI	CCNGG	5 cut(s)	124, 387, 471, 600, 792
SduI	GDGCHC	3 cut(s)	392, 636, 753
SfaNI	GCATC	3 cut(s)	843, 934, 987
SinI	GGWCC	1 cut(s)	794
SmiMI	CAYNNNNRTG	1 cut(s)	896
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	3 cut(s)	310, 615, 826
SsiI	CCGC	4 cut(s)	333, 362, 393, 396
SspMI	CTAG	3 cut(s)	116, 128, 771
SstI	GAGCTC	1 cut(s)	636
StyD4I	CCNGG	5 cut(s)	122, 385, 469, 598, 790
StyI	CCWWGG	4 cut(s)	429, 539, 744, 753
TaaI	ACNGT	3 cut(s)	564, 659, 726
TaiI	ACGT	2 cut(s)	105, 1015
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	3 cut(s)	310, 615, 826
TatI	WGTACW	2 cut(s)	659, 782
TauI	GCSGC	1 cut(s)	398
Tru1I	TTAA	3 cut(s)	479, 672, 872
Tru9I	TTAA	3 cut(s)	479, 672, 872
TscAI	CASTG	1 cut(s)	988
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	148, 692
TspRI	CASTG	1 cut(s)	988
Tth111I	GACNNNGTC	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	794
XapI	RAATTY	1 cut(s)	826
XbaI	TCTAGA	1 cut(s)	770
XceI	RCATGY	1 cut(s)	670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	760
XspI	CTAG	3 cut(s)	116, 128, 771
ZraI	GACGTC	1 cut(s)	103
ZrmI	AGTACT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.