Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0012597

Physical Location & Seq

Genomic Coordinates Reverse (-)

15720602 .. 15722358

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAGAATGGTGACAGAACAAGAGATATCGCAAGAGTTACAAGCCCTAATCCACGACTCCACTTCCAACCCAAACACCACCACCCCGACCTTCACCACCCTAAACGACGTCGTCCGGCAGCTCGAGTCCAGGCTCGGCCTCGACCTCTCCCACAAGACCGACTTCATTCGGGCCCAGATCCACTACCTCTTCCGATCCCACCCACCCACTCCCCAACCTCAACCCCAGCCCCAACCCCAACAAATTCCTCAGCCTCAGCACGCCAAAGACCATTTTGCCCTTCACCAACCCCCTAATTACCACCACCCCGTCCCCTCCGCCTTCCAGACCTTCTCCTCCCAGCCCCCGCCTCCACTCCTGAAGCCAGAGCCCGGCACCAACGCTCCTGCGCCCGTTTCAGGCTCTAACACGTCCAAGGACAGTGCTAAACCTAAAGCTAAGAGAAAAGGTGGCCCGGGAGGTCTAAACAAACTTTGTGGTGTTTCGCCTGAGCTTCAGGCCATTGTTGGCCACCCAACTCTCCCAAGGACTGAGAACCAGCAGTTCCCAAGAAGCCCAAGGTGCCTAAGAATGCCATGGAGTCTGCAACGAAAAGTACAGAACCGAGTCCTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

206

Amino Acids

22.85

Weight (kDa)

10.01

Isoelectric Point (pI)

72.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30330
malus_domestica	MD03G1190700.v1.1 MD11G1207400.v1.1
prunus_persica	Prupe.4G228000_v2.0.a1
pyrus_communis	pycom03g14390 pycom11g18060
rosa_chinensis	RchiOBHm_Chr5g0056201
rosa_laevigata	RLG00000035063
rosa_multiflora	Rmu_co7981676.1_g000001 Rmu_sc0000680.1_g000024
rosa_roxburghii	Rroxscaffold_1G00024090
rosa_rugosa	Rorug05G0298000 Rorug05G0298100
rosa_samantha	Rh5AG369100 Rh5BG380200 Rh5CG403000 Rh5DG393200
rosa_wichuraiana	Rw0G004420 Rw0G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	111
AccB1I	GGYRCC	2 cut(s)	374, 561
AciI	CCGC	2 cut(s)	318, 347
AclWI	GGATC	2 cut(s)	172, 189
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	2 cut(s)	380, 479
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	597
AfiI	CCNNNNNNNGG	2 cut(s)	371, 398
AflIII	ACRYGT	1 cut(s)	408
AjiI	CACGTC	1 cut(s)	411
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	3 cut(s)	121, 437, 493
AluI	AGCT	3 cut(s)	121, 437, 493
AlwI	GGATC	2 cut(s)	172, 189
Ama87I	CYCGRG	2 cut(s)	122, 454
AoxI	GGCC	5 cut(s)	136, 171, 451, 498, 508
ApaI	GGGCCC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	3 cut(s)	171, 172, 452
AsuC2I	CCSGG	3 cut(s)	372, 455, 456
AsuHPI	GGTGA	3 cut(s)	22, 85, 275
AvaI	CYCGRG	2 cut(s)	122, 454
BaeGI	GKGCMC	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	510
BanI	GGYRCC	2 cut(s)	374, 561
BanII	GRGCYC	2 cut(s)	175, 372
BbvCI	CCTCAGC	2 cut(s)	249, 255
BbvI	GCAGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	130
BcnI	CCSGG	3 cut(s)	372, 455, 456
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme1390I	CCNGG	4 cut(s)	130, 372, 455, 456
BmeT110I	CYCGRG	2 cut(s)	122, 454
BmgBI	CACGTC	1 cut(s)	411
BmgT120I	GGNCC	3 cut(s)	171, 172, 452
BmiI	GGNNCC	3 cut(s)	173, 376, 563
BmrFI	CCNGG	4 cut(s)	130, 372, 455, 456
Bpu10I	CCTNAGC	3 cut(s)	249, 255, 489
BpuMI	CCSGG	3 cut(s)	372, 455, 456
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	5 cut(s)	414, 454, 524, 557, 575
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 398
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	5 cut(s)	414, 454, 524, 557, 575
BseLI	CCNNNNNNNGG	2 cut(s)	371, 398
BseMII	CTCAG	4 cut(s)	263, 269, 480, 522
BseRI	GAGGAG	1 cut(s)	325
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	130
BseYI	CCCAGC	2 cut(s)	225, 339
BshFI	GGCC	5 cut(s)	138, 173, 453, 500, 510
BshNI	GGYRCC	2 cut(s)	374, 561
BsiHKCI	CYCGRG	2 cut(s)	122, 454
BsiSI	CCGG	3 cut(s)	115, 372, 455
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	2 cut(s)	371, 398
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	576
BsnI	GGCC	5 cut(s)	138, 173, 453, 500, 510
BsoBI	CYCGRG	2 cut(s)	122, 454
Bsp120I	GGGCCC	1 cut(s)	171
Bsp1286I	GDGCHC	2 cut(s)	175, 372
Bsp143I	GATC	2 cut(s)	177, 194
Bsp19I	CCATGG	1 cut(s)	575
BspACI	CCGC	2 cut(s)	318, 347
BspANI	GGCC	5 cut(s)	138, 173, 453, 500, 510
BspCNI	CTCAG	4 cut(s)	262, 268, 481, 523
BspLI	GGNNCC	3 cut(s)	173, 376, 563
BspPI	GGATC	2 cut(s)	172, 189
BspT107I	GGYRCC	2 cut(s)	374, 561
BssECI	CCNNGG	5 cut(s)	414, 454, 524, 557, 575
BssMI	GATC	2 cut(s)	177, 194
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	4 cut(s)	414, 524, 557, 575
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	194
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	6 cut(s)	249, 255, 438, 489, 531, 566
BstDSI	CCRYGG	1 cut(s)	575
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	2 cut(s)	180, 197
BstMBI	GATC	2 cut(s)	177, 194
BstMWI	GCNNNNNNNGC	1 cut(s)	561
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	4 cut(s)	128, 370, 453, 454
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	5 cut(s)	138, 173, 453, 500, 510
BtgI	CCRYGG	1 cut(s)	575
BtrI	CACGTC	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	261
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	3 cut(s)	171, 172, 452
Cfr9I	CCCGGG	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	596
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	1 cut(s)	576
CviQI	GTAC	1 cut(s)	596
DdeI	CTNAG	6 cut(s)	249, 255, 438, 489, 531, 566
DpnI	GATC	2 cut(s)	179, 196
DpnII	GATC	2 cut(s)	177, 194
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
EciI	GGCGGA	1 cut(s)	307
Eco130I	CCWWGG	4 cut(s)	414, 524, 557, 575
Eco24I	GRGCYC	2 cut(s)	175, 372
Eco32I	GATATC	1 cut(s)	27
Eco57I	CTGAAG	2 cut(s)	380, 479
Eco88I	CYCGRG	2 cut(s)	122, 454
EcoRII	CCWGG	1 cut(s)	128
EcoRV	GATATC	1 cut(s)	27
EcoT14I	CCWWGG	4 cut(s)	414, 524, 557, 575
EcoT38I	GRGCYC	2 cut(s)	175, 372
ErhI	CCWWGG	4 cut(s)	414, 524, 557, 575
FaeI	CATG	1 cut(s)	579
FaiI	YATR	1 cut(s)	577
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	1 cut(s)	575
FauI	CCCGC	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	119
FriOI	GRGCYC	2 cut(s)	175, 372
Fsp4HI	GCNGC	1 cut(s)	119
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	1 cut(s)	119
GsaI	CCCAGC	2 cut(s)	229, 343
HaeIII	GGCC	5 cut(s)	138, 173, 453, 500, 510
HapII	CCGG	3 cut(s)	115, 372, 455
HhaI	GCGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	579
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HinfI	GANTC	4 cut(s)	56, 125, 580, 606
HpaII	CCGG	3 cut(s)	115, 372, 455
HphI	GGTGA	3 cut(s)	22, 85, 275
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	2 cut(s)	325, 358
Hpy99I	CGWCG	2 cut(s)	110, 113
HpyAV	CCTTC	4 cut(s)	100, 290, 331, 340
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	2 cut(s)	108, 410
HpyCH4V	TGCA	1 cut(s)	586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	561
HpyF3I	CTNAG	6 cut(s)	249, 255, 438, 489, 531, 566
HpySE526I	ACGT	2 cut(s)	108, 410
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	579
HspAI	GCGC	1 cut(s)	389
Kzo9I	GATC	2 cut(s)	177, 194
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	1 cut(s)	130
MaeII	ACGT	2 cut(s)	108, 410
MaeIII	GTNAC	2 cut(s)	10, 36
MalI	GATC	2 cut(s)	179, 196
MboI	GATC	2 cut(s)	177, 194
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	2 cut(s)	175, 372
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	2 cut(s)	243, 295
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	4 cut(s)	50, 134, 589, 615
MmeI	TCCRAC	1 cut(s)	90
Mox20I	TGGCCA	1 cut(s)	510
MscI	TGGCCA	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	510
MspI	CCGG	3 cut(s)	115, 372, 455
MspR9I	CCNGG	4 cut(s)	130, 372, 455, 456
Mva1269I	GAATGC	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	561
NciI	CCSGG	3 cut(s)	372, 455, 456
NcoI	CCATGG	1 cut(s)	575
NdeII	GATC	2 cut(s)	177, 194
NlaIII	CATG	1 cut(s)	579
NlaIV	GGNNCC	3 cut(s)	173, 376, 563
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	10
PaeR7I	CTCGAG	1 cut(s)	122
PctI	GAATGC	1 cut(s)	576
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	4 cut(s)	50, 133, 588, 614
PpsI	GAGTC	4 cut(s)	50, 133, 588, 614
Psp6I	CCWGG	1 cut(s)	128
PspFI	CCCAGC	2 cut(s)	225, 339
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	3 cut(s)	173, 376, 563
PspOMI	GGGCCC	1 cut(s)	171
PspPI	GGNCC	3 cut(s)	171, 172, 452
PspXI	VCTCGAGB	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	177
PsyI	GACNNNGTC	1 cut(s)	110
RsaI	GTAC	1 cut(s)	597
RsaNI	GTAC	1 cut(s)	596
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	177, 194
Sau96I	GGNCC	3 cut(s)	171, 172, 452
SchI	GAGTC	4 cut(s)	50, 134, 589, 615
ScrFI	CCNGG	4 cut(s)	130, 372, 455, 456
SduI	GDGCHC	2 cut(s)	175, 372
Sfr274I	CTCGAG	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	122
SmaI	CCCGGG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	243, 295
SsiI	CCGC	2 cut(s)	318, 347
StyD4I	CCNGG	4 cut(s)	128, 370, 453, 454
StyI	CCWWGG	4 cut(s)	414, 524, 557, 575
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	2 cut(s)	111, 413
TaqI	TCGA	2 cut(s)	123, 141
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	2 cut(s)	243, 295
TatI	WGTACW	1 cut(s)	595
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	154
TspMI	CCCGGG	1 cut(s)	454
TspRI	CASTG	1 cut(s)	427
Tth111I	GACNNNGTC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	243
XhoI	CTCGAG	1 cut(s)	122
XmaI	CCCGGG	1 cut(s)	454
ZraI	GACGTC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.