Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0012597

Physical Location & Seq

Genomic Coordinates Reverse (-)

26223455 .. 26226193

Gene Structure 2739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1190700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGTGACAGAACAAGAGATATCGCAAGCGTTACAAGCCCTAATCCATGACTCCACTTCCAACCCAAACACCACCACCCCAACCTTCACCACCCTAAACGACGTCGTCCGGCAGCTCGAGTCCAGGCTCGGCCTCGACCTCTCCCACAAGACCGACTTCATTCGGGCCCAGATCCACTACCTCTTCCGATCCCACCCACCCACTCCCCAACCTCAACCCCAGCCCCAACCCCAACAAATTCCTCAACCTCAGCACCCCAAAGACCATTTTGCCCTCCACCAACCCCCTAATTACCACCACCCCGCCCCCTCCGCCTTCCAGACCTTCTCCTCCCAGCCCCCGCCTCCACTCCTGAAGCCAGAGCCCGGTACCGACGCTCCTGCGCCCGTTTCAGGCTCTAACACGCCCAAGGACAGTGCTAAACCTAAATCTAAGAGAAAAGGTGGCCCGGGAGGTCTAAACAAACTTTGTGGTGTTTCGCCTGAGCTTCAGGCCATTGTTGGTCACCCAACTCTCCCAAGGACTGAGATTGTTAAACAACTGTGGGCTTACATAAGGAAGAACAATCTCCAAGATCCCGGTAACAAGAGGAAAATTATTTGCAATGATGAGCTGCGAGTGGTTTTTGAGACAGACTGTACTGACATGTTTAAGATGAACAAGTTGCTTGCTAAACATATTATTCCACTCGAACCATCAAAACCAGCAGTTCCCAAGAAGCCCAAGGTGCCAAAGAATGCTGTGGAGTCTGCAACAAAAAGTACAGAACCGAGTCCTTCCCTGATAATATCTGAAGCACTTGCAAATTTTTTTGGTGCTGGTGTAAGGGAGATGATCCAGTCAGAGGTTGTAATGCGTATCTGGGAGTACATAAAGGTCCACCATCTGGAGGATCCTCAAAATCAAATGGCTATACATTGTGATGCAAAGCTTCAAGAAATCTTTGGTTGTGAAACCATCAATGCATTGGAAATACCAGATATTTTGGAACGTCATCACATATTCAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

338

Amino Acids

37.73

Weight (kDa)

8.71

Isoelectric Point (pI)

65.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	3 - 60	6.7e-08	DEK C terminal domain
SWIB	PF02201	156 - 227	8.8e-28	SWIB/MDM2 domain
SWIB	PF02201	262 - 332	1e-22	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30330
malus_domestica	MD03G1190700.v1.1 MD11G1207400.v1.1
prunus_persica	Prupe.4G228000_v2.0.a1
pyrus_communis	pycom03g14390 pycom11g18060
rosa_chinensis	RchiOBHm_Chr5g0056201
rosa_laevigata	RLG00000035063
rosa_multiflora	Rmu_co7981676.1_g000001 Rmu_sc0000680.1_g000024
rosa_roxburghii	Rroxscaffold_1G00024090
rosa_rugosa	Rorug05G0298000 Rorug05G0298100
rosa_samantha	Rh5AG369100 Rh5BG380200 Rh5CG403000 Rh5DG393200
rosa_wichuraiana	Rw0G004420 Rw0G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
Acc65I	GGTACC	1 cut(s)	368
AccB1I	GGYRCC	2 cut(s)	368, 727
AccB7I	CCANNNNNTGG	1 cut(s)	886
AciI	CCGC	3 cut(s)	303, 312, 341
AclWI	GGATC	6 cut(s)	166, 183, 569, 829, 887, 900
AcsI	RAATTY	2 cut(s)	237, 805
AcuI	CTGAAG	3 cut(s)	374, 473, 813
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	4 cut(s)	370, 640, 763, 869
AfiI	CCNNNNNNNGG	5 cut(s)	365, 392, 844, 886, 889
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	1 cut(s)	935
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	4 cut(s)	115, 487, 613, 931
AluI	AGCT	4 cut(s)	115, 487, 613, 931
Alw26I	GTCTC	1 cut(s)	623
AlwI	GGATC	6 cut(s)	166, 183, 569, 829, 887, 900
Ama87I	CYCGRG	2 cut(s)	116, 448
AoxI	GGCC	4 cut(s)	130, 165, 445, 492
ApaI	GGGCCC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	112, 613
ApoI	RAATTY	2 cut(s)	237, 805
Asp718I	GGTACC	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	4 cut(s)	165, 166, 446, 877
AsuC2I	CCSGG	4 cut(s)	366, 449, 450, 579
AsuHPI	GGTGA	3 cut(s)	16, 79, 497
AvaI	CYCGRG	2 cut(s)	116, 448
AvaII	GGWCC	1 cut(s)	877
BaeGI	GKGCMC	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	892
BanI	GGYRCC	2 cut(s)	368, 727
BanII	GRGCYC	2 cut(s)	169, 366
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	124, 600
BccI	CCATC	3 cut(s)	703, 891, 965
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	1 cut(s)	124
BcnI	CCSGG	4 cut(s)	366, 449, 450, 579
BcoDI	GTCTC	1 cut(s)	623
BisI	GCNGC	2 cut(s)	113, 614
BlsI	GCNGC	2 cut(s)	114, 615
Bme1390I	CCNGG	5 cut(s)	124, 366, 449, 450, 579
Bme18I	GGWCC	1 cut(s)	877
BmeT110I	CYCGRG	2 cut(s)	116, 448
BmgT120I	GGNCC	4 cut(s)	165, 166, 446, 877
BmiI	GGNNCC	4 cut(s)	167, 370, 729, 894
BmrFI	CCNGG	5 cut(s)	124, 366, 449, 450, 579
BmsI	GCATC	1 cut(s)	913
BpmI	CTGGAG	1 cut(s)	908
Bpu10I	CCTNAGC	2 cut(s)	249, 483
BpuMI	CCSGG	4 cut(s)	366, 449, 450, 579
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	4 cut(s)	408, 448, 518, 723
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	5 cut(s)	365, 392, 844, 886, 889
Bse1I	ACTGG	1 cut(s)	838
Bse3DI	GCAATG	1 cut(s)	610
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	4 cut(s)	408, 448, 518, 723
BseLI	CCNNNNNNNGG	5 cut(s)	365, 392, 844, 886, 889
BseMI	GCAATG	1 cut(s)	610
BseMII	CTCAG	3 cut(s)	263, 474, 516
BseNI	ACTGG	1 cut(s)	838
BseRI	GAGGAG	1 cut(s)	319
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	2 cut(s)	124, 600
BseYI	CCCAGC	2 cut(s)	219, 333
BshFI	GGCC	4 cut(s)	132, 167, 447, 494
BshNI	GGYRCC	2 cut(s)	368, 727
BsiHKCI	CYCGRG	2 cut(s)	116, 448
BsiSI	CCGG	4 cut(s)	109, 366, 449, 579
BslI	CCNNNNNNNGG	5 cut(s)	365, 392, 844, 886, 889
BsmAI	GTCTC	1 cut(s)	623
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	4 cut(s)	132, 167, 447, 494
BsoBI	CYCGRG	2 cut(s)	116, 448
Bsp120I	GGGCCC	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	169, 366
Bsp143I	GATC	5 cut(s)	171, 188, 574, 834, 892
BspACI	CCGC	3 cut(s)	303, 312, 341
BspANI	GGCC	4 cut(s)	132, 167, 447, 494
BspCNI	CTCAG	3 cut(s)	262, 475, 517
BspLI	GGNNCC	4 cut(s)	167, 370, 729, 894
BspPI	GGATC	6 cut(s)	166, 183, 569, 829, 887, 900
BspT107I	GGYRCC	2 cut(s)	368, 727
BsrDI	GCAATG	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	838
BssECI	CCNNGG	4 cut(s)	408, 448, 518, 723
BssMI	GATC	5 cut(s)	171, 188, 574, 834, 892
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	3 cut(s)	408, 518, 723
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	3 cut(s)	416, 543, 638
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	27, 669
BstDEI	CTNAG	4 cut(s)	249, 432, 483, 525
BstEII	GGTNACC	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	5 cut(s)	174, 191, 577, 837, 895
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	5 cut(s)	171, 188, 574, 834, 892
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 311, 727
BstNI	CCWGG	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	649
BstPI	GGTNACC	1 cut(s)	503
BstSCI	CCNGG	5 cut(s)	122, 364, 447, 448, 577
BstSLI	GKGCMC	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	124, 600
BstX2I	RGATCY	3 cut(s)	171, 574, 892
BstYI	RGATCY	3 cut(s)	171, 574, 892
BsuRI	GGCC	4 cut(s)	132, 167, 447, 494
BtsIMutI	CAGTG	1 cut(s)	421
Cac8I	GCNNGC	2 cut(s)	27, 669
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	4 cut(s)	165, 166, 446, 877
Cfr9I	CCCGGG	1 cut(s)	448
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	4 cut(s)	369, 639, 762, 868
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	2 cut(s)	47, 646
CviQI	GTAC	4 cut(s)	369, 639, 762, 868
DdeI	CTNAG	4 cut(s)	249, 432, 483, 525
DpnI	GATC	5 cut(s)	173, 190, 576, 836, 894
DpnII	GATC	5 cut(s)	171, 188, 574, 834, 892
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	1 cut(s)	301
Eco130I	CCWWGG	3 cut(s)	408, 518, 723
Eco24I	GRGCYC	2 cut(s)	169, 366
Eco32I	GATATC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	877
Eco57I	CTGAAG	3 cut(s)	374, 473, 813
Eco88I	CYCGRG	2 cut(s)	116, 448
Eco91I	GGTNACC	1 cut(s)	503
EcoO65I	GGTNACC	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	122
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	3 cut(s)	408, 518, 723
EcoT22I	ATGCAT	1 cut(s)	967
EcoT38I	GRGCYC	2 cut(s)	169, 366
ErhI	CCWWGG	3 cut(s)	408, 518, 723
FaeI	CATG	2 cut(s)	50, 649
FaiI	YATR	7 cut(s)	48, 554, 647, 678, 872, 914, 1001
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	2 cut(s)	46, 645
FauI	CCCGC	2 cut(s)	310, 348
Fnu4HI	GCNGC	2 cut(s)	113, 614
FriOI	GRGCYC	2 cut(s)	169, 366
Fsp4HI	GCNGC	2 cut(s)	113, 614
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	2 cut(s)	113, 614
GsaI	CCCAGC	2 cut(s)	223, 337
GsuI	CTGGAG	1 cut(s)	908
HaeIII	GGCC	4 cut(s)	132, 167, 447, 494
HapII	CCGG	4 cut(s)	109, 366, 449, 579
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	1 cut(s)	385
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	50, 649
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HindIII	AAGCTT	1 cut(s)	929
HinfI	GANTC	4 cut(s)	50, 119, 746, 772
HpaII	CCGG	4 cut(s)	109, 366, 449, 579
HphI	GGTGA	3 cut(s)	16, 79, 497
Hpy166II	GTNNAC	1 cut(s)	880
Hpy188I	TCNGA	3 cut(s)	188, 793, 844
Hpy188III	TCNNGA	5 cut(s)	319, 352, 887, 935, 1006
Hpy8I	GTNNAC	1 cut(s)	880
Hpy99I	CGWCG	3 cut(s)	104, 107, 377
HpyAV	CCTTC	4 cut(s)	94, 325, 334, 786
HpyCH4III	ACNGT	3 cut(s)	416, 543, 638
HpyCH4IV	ACGT	2 cut(s)	102, 991
HpyCH4V	TGCA	5 cut(s)	603, 752, 803, 926, 965
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 311, 727
HpyF3I	CTNAG	4 cut(s)	249, 432, 483, 525
HpySE526I	ACGT	2 cut(s)	102, 991
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	50, 649
HspAI	GCGC	1 cut(s)	383
KpnI	GGTACC	1 cut(s)	372
Kzo9I	GATC	5 cut(s)	171, 188, 574, 834, 892
LmnI	GCTCC	1 cut(s)	382
Lsp1109I	GCAGC	2 cut(s)	124, 600
LweI	GCATC	1 cut(s)	913
MaeII	ACGT	2 cut(s)	102, 991
MaeIII	GTNAC	4 cut(s)	4, 30, 503, 581
MalI	GATC	5 cut(s)	173, 190, 576, 836, 894
MboI	GATC	5 cut(s)	171, 188, 574, 834, 892
MboII	GAAGA	2 cut(s)	175, 571
MflI	RGATCY	3 cut(s)	171, 574, 892
MhlI	GDGCHC	2 cut(s)	169, 366
MluCI	AATT	4 cut(s)	237, 289, 594, 805
MlyI	GAGTC	4 cut(s)	44, 128, 755, 781
MmeI	TCCRAC	1 cut(s)	84
Mph1103I	ATGCAT	1 cut(s)	967
MseI	TTAA	2 cut(s)	534, 651
MslI	CAYNNNNRTG	1 cut(s)	921
MspI	CCGG	4 cut(s)	109, 366, 449, 579
MspR9I	CCNGG	5 cut(s)	124, 366, 449, 450, 579
Mva1269I	GAATGC	1 cut(s)	742
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	3 cut(s)	35, 311, 727
NciI	CCSGG	4 cut(s)	366, 449, 450, 579
NdeII	GATC	5 cut(s)	171, 188, 574, 834, 892
NlaIII	CATG	2 cut(s)	50, 649
NlaIV	GGNNCC	4 cut(s)	167, 370, 729, 894
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	2 cut(s)	4, 503
NsiI	ATGCAT	1 cut(s)	967
NspI	RCATGY	1 cut(s)	649
PaeR7I	CTCGAG	1 cut(s)	116
PciI	ACATGT	1 cut(s)	645
PctI	GAATGC	1 cut(s)	742
PflFI	GACNNNGTC	1 cut(s)	104
PflMI	CCANNNNNTGG	1 cut(s)	886
PkrI	GCNGC	2 cut(s)	114, 615
PleI	GAGTC	4 cut(s)	44, 127, 754, 780
PpsI	GAGTC	4 cut(s)	44, 127, 754, 780
PscI	ACATGT	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	122
PspEI	GGTNACC	1 cut(s)	503
PspFI	CCCAGC	2 cut(s)	219, 333
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	4 cut(s)	167, 370, 729, 894
PspOMI	GGGCCC	1 cut(s)	165
PspPI	GGNCC	4 cut(s)	165, 166, 446, 877
PspXI	VCTCGAGB	1 cut(s)	116
PsuI	RGATCY	3 cut(s)	171, 574, 892
PsyI	GACNNNGTC	1 cut(s)	104
RsaI	GTAC	4 cut(s)	370, 640, 763, 869
RsaNI	GTAC	4 cut(s)	369, 639, 762, 868
RseI	CAYNNNNRTG	1 cut(s)	921
SaqAI	TTAA	2 cut(s)	534, 651
SatI	GCNGC	2 cut(s)	113, 614
Sau3AI	GATC	5 cut(s)	171, 188, 574, 834, 892
Sau96I	GGNCC	4 cut(s)	165, 166, 446, 877
SchI	GAGTC	4 cut(s)	44, 128, 755, 781
ScrFI	CCNGG	5 cut(s)	124, 366, 449, 450, 579
SduI	GDGCHC	2 cut(s)	169, 366
SfaNI	GCATC	1 cut(s)	913
Sfr274I	CTCGAG	1 cut(s)	116
SinI	GGWCC	1 cut(s)	877
SlaI	CTCGAG	1 cut(s)	116
SmaI	CCCGGG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	921
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	4 cut(s)	237, 289, 594, 805
SsiI	CCGC	3 cut(s)	303, 312, 341
StyD4I	CCNGG	5 cut(s)	122, 364, 447, 448, 577
StyI	CCWWGG	3 cut(s)	408, 518, 723
TaaI	ACNGT	3 cut(s)	416, 543, 638
TaiI	ACGT	2 cut(s)	105, 994
TaqI	TCGA	3 cut(s)	117, 135, 690
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	4 cut(s)	237, 289, 594, 805
TatI	WGTACW	3 cut(s)	638, 761, 867
Tru1I	TTAA	2 cut(s)	534, 651
Tru9I	TTAA	2 cut(s)	534, 651
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	2 cut(s)	4, 503
TseI	GCWGC	2 cut(s)	112, 613
Tsp45I	GTSAC	2 cut(s)	4, 503
TspDTI	ATGAA	2 cut(s)	148, 671
TspMI	CCCGGG	1 cut(s)	448
TspRI	CASTG	1 cut(s)	421
Tth111I	GACNNNGTC	1 cut(s)	104
Van91I	CCANNNNNTGG	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	877
XapI	RAATTY	2 cut(s)	237, 805
XceI	RCATGY	1 cut(s)	649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	964
XhoI	CTCGAG	1 cut(s)	116
XmaI	CCCGGG	1 cut(s)	448
ZraI	GACGTC	1 cut(s)	103
Zsp2I	ATGCAT	1 cut(s)	967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.