Rmu_sc0000680.1_g000024

Upstream activation factor subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000680.1
Physical Location & Seq
Forward (+)
99464 .. 104528
5065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000680.1_g000024.1.cds

Sequence Viewer

Length: 1602 bp
atggtttatggtagtgtgtggttggggtttgtggtaggaggtgtggactgtgggtttatggttgtttgggaagaggggaagttagatgaccaagttgagaaaattgggcttgccattgaaggaggtatgctggtttggtggaagggaggtgatggttgtgacatgcctaaaccagtccaaggagtagaagatggagacattaaggagccgaatgtgattttggaaggtggtgtcggaggtgaattcaaaaatgaatggaaggtgggcttgttagactcgagacaccaactactggcagatgtgtaccctcgcggtggaacctttgcgaattcccggtgccatcaagcaagaaaacacctgaaaaagacgaaactaaccccgcctcgacgcccaccaatctcctcgactcccaggaccgttcggtcatttaccctcacaaaacaagaagagagagaaagagataagctcaacagcaactcttggggggcagagagagagagagagaatggcgacagagcaagagatatcgcaagctttagaagccctgatccacgcctccgacgccccgaagttcgccaccctaaacgacgtcgtgcagcagctcgagtccaagctcggcggccgcgacctctcccacaaggccgacttcactccgacgccccaaagttcgccaccctaaacgacgtcgtgcagcagctcgagtccaagctcggcggccgcgacctctcccacaaggccgacttcattcgggcccagatccactaccttctccaatcccacccgccaccaactccccctcctccccagcctcagcctcagaatcaacctcaacctcctcctaaagaccattttgccctccagcaaaaccccaattaccgcccgcctccctccgccttccagaccttcgcctcccaccctcctcaacttccttctcccaagcccgagcccgagcccagcactactcccgtacccgcatccgtttccgcctccgacccgccgcctaaggatggcgctaaacctaaaccaaagagaaaaggaggcccagggggtttaaacaaactttgtggtgtttcgcctgaactacaggtcattgttggccatccaactcttccaaggactgagattgtgaagcaactgtgggcttacataagaaaacacaacctccaagaccctggtaacaagaggaaaattatttgcaatgatgagctgcggttggttttcgagacagactgtactgatatgtttaagatgaacaagttgctggctaaacatatcattgcacttgaaccttcaaaacagccagttcccaagaagcccaaggttgtcgcggactctggaacaaagagttaccagacaggtccttctgtgataatatctgaagcacttgcaaatttttttggtgttggtgggagggagatgctccagtctgaggttttgcaacgaatatgggaatacataaaggtcaatcatctggaggatcctctgaatccaatggctattctatgtgatgcaaagcttcaagatatctttggttgtgaaagcatctctgcattgggaatacctgaagtgttggcacgtcatcacatattcaggagatcatga

Protein Analysis

533

Amino Acids

59.48

Weight (kDa)

9.57

Isoelectric Point (pI)

60.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 421
AatII GACGTC 2 cut(s) 592, 687
AccB1I GGYRCC 1 cut(s) 336
AccB7I CCANNNNNTGG 1 cut(s) 292
AccII CGCG 4 cut(s) 312, 625, 720, 1328
AclWI GGATC 4 cut(s) 542, 751, 1472, 1485
AcoI YGGCCR 3 cut(s) 620, 715, 1096
AcsI RAATTY 3 cut(s) 242, 328, 1390
AcuI CTGAAG 2 cut(s) 1398, 1584
AcyI GRCGYC 5 cut(s) 388, 562, 589, 657, 684
AfaI GTAC 3 cut(s) 305, 969, 1234
AfiI CCNNNNNNNGG 5 cut(s) 179, 292, 314, 1007, 1429
AgsI TTSAA 5 cut(s) 119, 247, 1286, 1293, 1520
AjiI CACGTC 1 cut(s) 1577
AjnI CCWGG 3 cut(s) 410, 1042, 1171
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 8 cut(s) 466, 534, 602, 614, 697, 709, 1207, 1516
AluI AGCT 8 cut(s) 466, 534, 602, 614, 697, 709, 1207, 1516
Alw26I GTCTC 3 cut(s) 189, 274, 1217
AlwI GGATC 4 cut(s) 542, 751, 1472, 1485
Ama87I CYCGRG 5 cut(s) 277, 603, 698, 941, 947
AoxI GGCC 7 cut(s) 620, 640, 715, 735, 750, 1039, 1096
ApaI GGGCCC 1 cut(s) 754
ApeKI GCWGC 5 cut(s) 596, 599, 691, 694, 1207
ApoI RAATTY 3 cut(s) 242, 328, 1390
AspLEI GCGC 1 cut(s) 1013
AspS9I GGNCC 5 cut(s) 414, 750, 751, 1040, 1358
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 2 cut(s) 161, 251
AvaI CYCGRG 5 cut(s) 277, 603, 698, 941, 947
AvaII GGWCC 2 cut(s) 414, 1358
AxyI CCTNAGG 1 cut(s) 1002
BaeGI GKGCMC 1 cut(s) 754
BaeI ACNNNNGTAYC 2 cut(s) 951, 984
BalI TGGCCA 1 cut(s) 1098
BamHI GGATCC 1 cut(s) 1477
BanI GGYRCC 1 cut(s) 336
BanII GRGCYC 3 cut(s) 754, 948, 954
BbvCI CCTCAGC 1 cut(s) 810
BbvI GCAGC 5 cut(s) 608, 611, 703, 706, 1194
BccI CCATC 5 cut(s) 146, 185, 348, 1001, 1107
BciT130I CCWGG 3 cut(s) 412, 1044, 1173
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 3 cut(s) 189, 274, 1217
BfmI CTRYAG 1 cut(s) 1082
BfoI RGCGCY 1 cut(s) 1014
Bme1390I CCNGG 4 cut(s) 334, 412, 1044, 1173
Bme18I GGWCC 2 cut(s) 414, 1358
BmeT110I CYCGRG 5 cut(s) 277, 603, 698, 941, 947
BmgBI CACGTC 1 cut(s) 1577
BmgT120I GGNCC 5 cut(s) 414, 750, 751, 1040, 1358
BmiI GGNNCC 5 cut(s) 207, 319, 338, 752, 1479
BmrFI CCNGG 4 cut(s) 334, 412, 1044, 1173
BmsI GCATC 4 cut(s) 983, 1407, 1498, 1551
BplI GAGNNNNNCTC 2 cut(s) 450, 482
BpmI CTGGAG 3 cut(s) 842, 1406, 1493
Bpu10I CCTNAGC 1 cut(s) 810
BpuMI CCSGG 1 cut(s) 334
BsaHI GRCGYC 5 cut(s) 388, 562, 589, 657, 684
BsaJI CCNNGG 7 cut(s) 178, 410, 1042, 1043, 1112, 1171, 1317
BsaXI ACNNNNNCTCC 4 cut(s) 781, 811, 1146, 1176
Bsc4I CCNNNNNNNGG 5 cut(s) 179, 292, 314, 1007, 1429
Bse1I ACTGG 4 cut(s) 173, 297, 1301, 1423
Bse21I CCTNAGG 1 cut(s) 1002
Bse3DI GCAATG 2 cut(s) 1204, 1275
BseBI CCWGG 3 cut(s) 412, 1044, 1173
BseDI CCNNGG 7 cut(s) 178, 410, 1042, 1043, 1112, 1171, 1317
BseGI GGATG 3 cut(s) 974, 1012, 1099
BseLI CCNNNNNNNGG 5 cut(s) 179, 292, 314, 1007, 1429
BseMI GCAATG 2 cut(s) 1204, 1275
BseMII CTCAG 4 cut(s) 824, 830, 1110, 1419
BseNI ACTGG 4 cut(s) 173, 297, 1301, 1423
BseRI GAGGAG 4 cut(s) 391, 789, 825, 909
BseSI GKGCMC 1 cut(s) 754
BseX3I CGGCCG 2 cut(s) 620, 715
BseXI GCAGC 5 cut(s) 608, 611, 703, 706, 1194
BseYI CCCAGC 2 cut(s) 804, 953
BsgI GTGCAG 2 cut(s) 615, 710
Bsh1236I CGCG 4 cut(s) 312, 625, 720, 1328
Bsh1285I CGRYCG 2 cut(s) 623, 718
BshFI GGCC 7 cut(s) 622, 642, 717, 737, 752, 1041, 1098
BshNI GGYRCC 1 cut(s) 336
BsiEI CGRYCG 2 cut(s) 623, 718
BsiHKCI CYCGRG 5 cut(s) 277, 603, 698, 941, 947
BsiSI CCGG 1 cut(s) 334
BslI CCNNNNNNNGG 5 cut(s) 179, 292, 314, 1007, 1429
BsmAI GTCTC 3 cut(s) 189, 274, 1217
BsnI GGCC 7 cut(s) 622, 642, 717, 737, 752, 1041, 1098
BsoBI CYCGRG 5 cut(s) 277, 603, 698, 941, 947
Bsp120I GGGCCC 1 cut(s) 750
Bsp1286I GDGCHC 3 cut(s) 754, 948, 954
Bsp143I GATC 4 cut(s) 547, 756, 1477, 1595
BspANI GGCC 7 cut(s) 622, 642, 717, 737, 752, 1041, 1098
BspCNI CTCAG 4 cut(s) 823, 829, 1111, 1420
BspFNI CGCG 4 cut(s) 312, 625, 720, 1328
BspHI TCATGA 1 cut(s) 1598
BspLI GGNNCC 5 cut(s) 207, 319, 338, 752, 1479
BspPI GGATC 4 cut(s) 542, 751, 1472, 1485
BspT107I GGYRCC 1 cut(s) 336
BsrDI GCAATG 2 cut(s) 1204, 1275
BsrI ACTGG 4 cut(s) 173, 297, 1301, 1423
BssECI CCNNGG 7 cut(s) 178, 410, 1042, 1043, 1112, 1171, 1317
BssMI GATC 4 cut(s) 547, 756, 1477, 1595
BssNI GRCGYC 5 cut(s) 388, 562, 589, 657, 684
BssT1I CCWWGG 3 cut(s) 178, 1112, 1317
Bst2UI CCWGG 3 cut(s) 412, 1044, 1173
Bst4CI ACNGT 4 cut(s) 50, 418, 1137, 1232
Bst6I CTCTTC 3 cut(s) 66, 441, 1113
BstACI GRCGYC 5 cut(s) 388, 562, 589, 657, 684
BstC8I GCNNGC 4 cut(s) 111, 532, 881, 1263
BstDEI CTNAG 5 cut(s) 810, 816, 1002, 1119, 1428
BstF5I GGATG 3 cut(s) 974, 1012, 1099
BstFNI CGCG 4 cut(s) 312, 625, 720, 1328
BstH2I RGCGCY 1 cut(s) 1014
BstHHI GCGC 1 cut(s) 1013
BstKTI GATC 4 cut(s) 550, 759, 1480, 1598
BstMAI GTCTC 3 cut(s) 189, 274, 1217
BstMBI GATC 4 cut(s) 547, 756, 1477, 1595
BstMCI CGRYCG 2 cut(s) 623, 718
BstMWI GCNNNNNNNGC 2 cut(s) 540, 561
BstNI CCWGG 3 cut(s) 412, 1044, 1173
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 4 cut(s) 332, 410, 1042, 1171
BstSFI CTRYAG 1 cut(s) 1082
BstSLI GKGCMC 1 cut(s) 754
BstUI CGCG 4 cut(s) 312, 625, 720, 1328
BstV1I GCAGC 5 cut(s) 608, 611, 703, 706, 1194
BstX2I RGATCY 2 cut(s) 756, 1477
BstXI CCANNNNNNTGG 1 cut(s) 1172
BstYI RGATCY 2 cut(s) 756, 1477
BstZI CGGCCG 2 cut(s) 620, 715
Bsu36I CCTNAGG 1 cut(s) 1002
BsuRI GGCC 7 cut(s) 622, 642, 717, 737, 752, 1041, 1098
BtrI CACGTC 1 cut(s) 1577
BtsCI GGATG 3 cut(s) 974, 1012, 1099
Cac8I GCNNGC 4 cut(s) 111, 532, 881, 1263
CciI TCATGA 1 cut(s) 1598
CciNI GCGGCCGC 2 cut(s) 620, 715
CfoI GCGC 1 cut(s) 1013
Cfr13I GGNCC 5 cut(s) 414, 750, 751, 1040, 1358
CseI GACGC 3 cut(s) 396, 570, 665
Csp6I GTAC 3 cut(s) 304, 968, 1233
CspCI CAANNNNNGTGG 2 cut(s) 1045, 1080
CviAII CATG 2 cut(s) 163, 1599
CviQI GTAC 3 cut(s) 304, 968, 1233
DdeI CTNAG 5 cut(s) 810, 816, 1002, 1119, 1428
DpnI GATC 4 cut(s) 549, 758, 1479, 1597
DpnII GATC 4 cut(s) 547, 756, 1477, 1595
DraI TTTAAA 1 cut(s) 1053
DrdI GACNNNNNNGTC 1 cut(s) 421
DseDI GACNNNNNNGTC 1 cut(s) 421
EaeI YGGCCR 3 cut(s) 620, 715, 1096
EagI CGGCCG 2 cut(s) 620, 715
Eam1104I CTCTTC 3 cut(s) 66, 441, 1113
EarI CTCTTC 3 cut(s) 66, 441, 1113
EciI GGCGGA 2 cut(s) 880, 973
EclXI CGGCCG 2 cut(s) 620, 715
Eco130I CCWWGG 3 cut(s) 178, 1112, 1317
Eco24I GRGCYC 3 cut(s) 754, 948, 954
Eco32I GATATC 2 cut(s) 526, 1525
Eco47I GGWCC 2 cut(s) 414, 1358
Eco52I CGGCCG 2 cut(s) 620, 715
Eco57I CTGAAG 2 cut(s) 1398, 1584
Eco81I CCTNAGG 1 cut(s) 1002
Eco88I CYCGRG 5 cut(s) 277, 603, 698, 941, 947
EcoO109I RGGNCCY 1 cut(s) 1358
EcoRI GAATTC 2 cut(s) 242, 328
EcoRII CCWGG 3 cut(s) 410, 1042, 1171
EcoRV GATATC 2 cut(s) 526, 1525
EcoT14I CCWWGG 3 cut(s) 178, 1112, 1317
EcoT38I GRGCYC 3 cut(s) 754, 948, 954
ErhI CCWWGG 3 cut(s) 178, 1112, 1317
FaeI CATG 2 cut(s) 166, 1602
FalI AAGNNNNNCTT 6 cut(s) 251, 283, 630, 662, 725, 757
FatI CATG 2 cut(s) 162, 1598
FauI CCCGC 5 cut(s) 387, 789, 888, 979, 1002
FokI GGATG 3 cut(s) 961, 1019, 1086
FriOI GRGCYC 3 cut(s) 754, 948, 954
GlaI GCGC 1 cut(s) 1012
GsaI CCCAGC 2 cut(s) 808, 957
GsuI CTGGAG 3 cut(s) 842, 1406, 1493
HaeII RGCGCY 1 cut(s) 1014
HaeIII GGCC 7 cut(s) 622, 642, 717, 737, 752, 1041, 1098
HapII CCGG 1 cut(s) 334
HgaI GACGC 3 cut(s) 396, 570, 665
HhaI GCGC 1 cut(s) 1013
Hin1I GRCGYC 5 cut(s) 388, 562, 589, 657, 684
Hin1II CATG 2 cut(s) 166, 1602
Hin6I GCGC 1 cut(s) 1011
HinP1I GCGC 1 cut(s) 1011
HindIII AAGCTT 2 cut(s) 532, 1514
HinfI GANTC 7 cut(s) 275, 406, 606, 701, 820, 1331, 1486
HpaII CCGG 1 cut(s) 334
HphI GGTGA 2 cut(s) 161, 251
Hpy166II GTNNAC 2 cut(s) 46, 304
Hpy188I TCNGA 8 cut(s) 236, 560, 655, 819, 991, 1378, 1429, 1485
Hpy188III TCNNGA 8 cut(s) 279, 898, 1222, 1335, 1472, 1520, 1591, 1599
Hpy8I GTNNAC 2 cut(s) 46, 304
Hpy99I CGWCG 7 cut(s) 390, 564, 591, 594, 659, 686, 689
HpyCH4III ACNGT 4 cut(s) 50, 418, 1137, 1232
HpyCH4IV ACGT 3 cut(s) 589, 684, 1576
HpyCH4V TGCA 8 cut(s) 596, 691, 1197, 1280, 1388, 1438, 1511, 1550
HpyF10VI GCNNNNNNNGC 2 cut(s) 540, 561
HpyF3I CTNAG 5 cut(s) 810, 816, 1002, 1119, 1428
HpySE526I ACGT 3 cut(s) 589, 684, 1576
Hsp92I GRCGYC 5 cut(s) 388, 562, 589, 657, 684
Hsp92II CATG 2 cut(s) 166, 1602
HspAI GCGC 1 cut(s) 1011
Kzo9I GATC 4 cut(s) 547, 756, 1477, 1595
LmnI GCTCC 2 cut(s) 205, 1425
Lsp1109I GCAGC 5 cut(s) 608, 611, 703, 706, 1194
LweI GCATC 4 cut(s) 983, 1407, 1498, 1551
MaeII ACGT 3 cut(s) 589, 684, 1576
MaeIII GTNAC 3 cut(s) 158, 1175, 1346
MalI GATC 4 cut(s) 549, 758, 1479, 1597
MboI GATC 4 cut(s) 547, 756, 1477, 1595
MboII GAAGA 4 cut(s) 83, 200, 458, 1100
MflI RGATCY 2 cut(s) 756, 1477
MhlI GDGCHC 3 cut(s) 754, 948, 954
MlsI TGGCCA 1 cut(s) 1098
MluCI AATT 6 cut(s) 102, 242, 328, 871, 1188, 1390
MluNI TGGCCA 1 cut(s) 1098
MlyI GAGTC 5 cut(s) 269, 400, 615, 710, 1325
MmeI TCCRAC 5 cut(s) 214, 583, 678, 1014, 1127
Mox20I TGGCCA 1 cut(s) 1098
MscI TGGCCA 1 cut(s) 1098
MseI TTAA 3 cut(s) 201, 1052, 1245
Msp20I TGGCCA 1 cut(s) 1098
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 4 cut(s) 334, 412, 1044, 1173
MssI GTTTAAAC 1 cut(s) 1053
MvaI CCWGG 3 cut(s) 412, 1044, 1173
MvnI CGCG 4 cut(s) 312, 625, 720, 1328
MwoI GCNNNNNNNGC 2 cut(s) 540, 561
NciI CCSGG 1 cut(s) 334
NdeII GATC 4 cut(s) 547, 756, 1477, 1595
NlaIII CATG 2 cut(s) 166, 1602
NlaIV GGNNCC 5 cut(s) 207, 319, 338, 752, 1479
NmeAIII GCCGAG 2 cut(s) 595, 690
NmuCI GTSAC 1 cut(s) 158
NotI GCGGCCGC 2 cut(s) 620, 715
NspI RCATGY 1 cut(s) 166
PaeR7I CTCGAG 3 cut(s) 277, 603, 698
PagI TCATGA 1 cut(s) 1598
PasI CCCWGGG 1 cut(s) 1043
PcsI WCGNNNNNNNCGW 2 cut(s) 622, 717
PfeI GAWTC 2 cut(s) 820, 1486
PflMI CCANNNNNTGG 1 cut(s) 292
PleI GAGTC 5 cut(s) 269, 400, 614, 709, 1325
PmeI GTTTAAAC 1 cut(s) 1053
PpsI GAGTC 5 cut(s) 269, 400, 614, 709, 1325
PpuMI RGGWCCY 1 cut(s) 1358
Psp5II RGGWCCY 1 cut(s) 1358
Psp6I CCWGG 3 cut(s) 410, 1042, 1171
PspFI CCCAGC 2 cut(s) 804, 953
PspGI CCWGG 3 cut(s) 410, 1042, 1171
PspN4I GGNNCC 5 cut(s) 207, 319, 338, 752, 1479
PspOMI GGGCCC 1 cut(s) 750
PspPI GGNCC 5 cut(s) 414, 750, 751, 1040, 1358
PspPPI RGGWCCY 1 cut(s) 1358
PspXI VCTCGAGB 2 cut(s) 603, 698
PsuI RGATCY 2 cut(s) 756, 1477
RsaI GTAC 3 cut(s) 305, 969, 1234
RsaNI GTAC 3 cut(s) 304, 968, 1233
SaqAI TTAA 3 cut(s) 201, 1052, 1245
Sau3AI GATC 4 cut(s) 547, 756, 1477, 1595
Sau96I GGNCC 5 cut(s) 414, 750, 751, 1040, 1358
SchI GAGTC 5 cut(s) 269, 400, 615, 710, 1325
ScrFI CCNGG 4 cut(s) 334, 412, 1044, 1173
SduI GDGCHC 3 cut(s) 754, 948, 954
SfaNI GCATC 4 cut(s) 983, 1407, 1498, 1551
SfcI CTRYAG 1 cut(s) 1082
Sfr274I CTCGAG 3 cut(s) 277, 603, 698
SinI GGWCC 2 cut(s) 414, 1358
SlaI CTCGAG 3 cut(s) 277, 603, 698
SmlI CTYRAG 3 cut(s) 277, 603, 698
SmoI CTYRAG 3 cut(s) 277, 603, 698
Sse9I AATT 6 cut(s) 102, 242, 328, 871, 1188, 1390
StyD4I CCNGG 4 cut(s) 332, 410, 1042, 1171
StyI CCWWGG 3 cut(s) 178, 1112, 1317
TaaI ACNGT 4 cut(s) 50, 418, 1137, 1232
TaiI ACGT 3 cut(s) 592, 687, 1579
TaqI TCGA 6 cut(s) 278, 385, 404, 604, 699, 1221
TaqII GACCGA 1 cut(s) 411
TasI AATT 6 cut(s) 102, 242, 328, 871, 1188, 1390
TatI WGTACW 1 cut(s) 1232
TauI GCSGC 5 cut(s) 622, 625, 717, 720, 1000
TfiI GAWTC 2 cut(s) 820, 1486
Tru1I TTAA 3 cut(s) 201, 1052, 1245
Tru9I TTAA 3 cut(s) 201, 1052, 1245
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 5 cut(s) 596, 599, 691, 694, 1207
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 3 cut(s) 267, 733, 1265
TspGWI ACGGA 1 cut(s) 967
Van91I CCANNNNNTGG 1 cut(s) 292
VpaK11BI GGWCC 2 cut(s) 414, 1358
XapI RAATTY 3 cut(s) 242, 328, 1390
XceI RCATGY 1 cut(s) 166
XhoI CTCGAG 3 cut(s) 277, 603, 698
ZraI GACGTC 2 cut(s) 590, 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.