Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7981676.1

Orthogroup ID

OG0012597

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 514

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7981676.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 391 bp

gagttcagattgtgaagcaactgtgggcttacataagaaaacacaacctccaagaccctggtaacaagaggaaaattatttgcaatgatgagctgcggttggttttcgagacagactgtactgatatgtttaagatgaacaagttgctggctaaacatatcattgcacttgaaccttcaaaacagccagttcccaagaagcccaaggttgtcgcggactctggaacaaagagttaccagacaggtccttctgtgataatatctgaagcacttgcaaatttttttggtgttggtgggagggagatgctccagtctgaggttttgcaacgaatatgggaatacataaaggtcaatcatctggaggtattttcagtcccctgctcttgccctcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

130

Amino Acids

14.78

Weight (kDa)

9.1

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30330
malus_domestica	MD03G1190700.v1.1 MD11G1207400.v1.1
prunus_persica	Prupe.4G228000_v2.0.a1
pyrus_communis	pycom03g14390 pycom11g18060
rosa_chinensis	RchiOBHm_Chr5g0056201
rosa_laevigata	RLG00000035063
rosa_multiflora	Rmu_co7981676.1_g000001 Rmu_sc0000680.1_g000024
rosa_roxburghii	Rroxscaffold_1G00024090
rosa_rugosa	Rorug05G0298000 Rorug05G0298100
rosa_samantha	Rh5AG369100 Rh5BG380200 Rh5CG403000 Rh5DG393200
rosa_wichuraiana	Rw0G004420 Rw0G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	214
AciI	CCGC	2 cut(s)	96, 214
AcsI	RAATTY	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	2 cut(s)	172, 179
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	103
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	293
BpmI	CTGGAG	2 cut(s)	292, 379
BsaJI	CCNNGG	2 cut(s)	57, 203
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse1I	ACTGG	2 cut(s)	187, 309
Bse3DI	GCAATG	2 cut(s)	90, 161
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	2 cut(s)	57, 203
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMI	GCAATG	2 cut(s)	90, 161
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	2 cut(s)	187, 309
BseXI	GCAGC	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	358
BspACI	CCGC	2 cut(s)	96, 214
BspCNI	CTCAG	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	214
BsrDI	GCAATG	2 cut(s)	90, 161
BsrI	ACTGG	2 cut(s)	187, 309
BssECI	CCNNGG	2 cut(s)	57, 203
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	2 cut(s)	23, 118
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	314
BstFNI	CGCG	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	103
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstUI	CGCG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	80
BstXI	CCANNNNNNTGG	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	119
CviJI	RGCY	5 cut(s)	28, 93, 151, 186, 201
CviKI_1	RGCY	5 cut(s)	28, 93, 151, 186, 201
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
FaiI	YATR	5 cut(s)	34, 127, 158, 333, 343
FaqI	GGGAC	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	94
GsuI	CTGGAG	2 cut(s)	292, 379
HinfI	GANTC	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	8, 264, 315
Hpy188III	TCNNGA	3 cut(s)	108, 221, 358
HpyAV	CCTTC	2 cut(s)	185, 257
HpyCH4III	ACNGT	2 cut(s)	23, 118
HpyCH4V	TGCA	4 cut(s)	83, 166, 274, 324
HpyF3I	CTNAG	1 cut(s)	314
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	9 cut(s)	44, 71, 133, 200, 206, 227, 250, 322, 343
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	1 cut(s)	293
MaeIII	GTNAC	2 cut(s)	61, 232
MluCI	AATT	2 cut(s)	74, 276
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	5 cut(s)	58, 62, 290, 309, 354
MseI	TTAA	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PpuMI	RGGWCCY	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	244
PspPPI	RGGWCCY	1 cut(s)	244
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	8 cut(s)	50, 95, 177, 209, 246, 320, 350, 365
SfaNI	GCATC	1 cut(s)	293
SinI	GGWCC	1 cut(s)	244
Sse9I	AATT	2 cut(s)	74, 276
SsiI	CCGC	2 cut(s)	96, 214
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	2 cut(s)	23, 118
TaqI	TCGA	1 cut(s)	107
TasI	AATT	2 cut(s)	74, 276
TatI	WGTACW	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseI	GCWGC	1 cut(s)	93
TspDTI	ATGAA	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.