Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012597

Physical Location & Seq

Genomic Coordinates Reverse (-)

53668307 .. 53671881

Gene Structure 3575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG403000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCCCTCAACTCCCGGGACCGTTCGGTCATTTATCCTCACAAAACAAGAAGAGAGAGAAAGAGATAAGCTCAACAGCACTCTTGGGGGGGGGCAGAGAGAGAGACAGAGAATGGCGACAGAGCAAGAGATATCGCAAGCTTTAGAAGCCCTGATCCACGCCTCCGACGCCCCGAAGTTCGCCACTCTAAACGACGTCGTGCAGCAGCTCGAGTCCAAGCTCGGCGGCCACGACCTCTCCCACAAGTCCGACTTCATTCGGGCCCAGATCCACTACCTTCTCCAATCCCACCCGCCACCAACTCCCCCTCCTCCCCAGCCTCAACCTCCTCCTAAAGACCATTTTGCCCTCCAGCAAAACCCCAATTACCACCCGCCTCCCTCCGCCTTCCAGACCTTCGCCTCCCACCCTCCTCAACTTCCTTCTCCCAAGCCCAAGCCCGAGCCCGAGCCCAGCCCTCCTCCCGTACCCGCATCCGTTTCCGCCTCCGACCCGCCGCCTAAGGATGGCGCTAAACCTAAACCAAAGAGAAAAGGAGGCCCAGGGGGTTTAAACAAACTTTGTGGTGTTTCGCCTGAACTACAGGTCATTGTTGGCCATCCAACTCTTCCGAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGAAAACACAACCTCCAAGACCCCGGTAACAAGAGGAAAATTATTTGCAATGATGAGCTGCGGTTGGTTTTCGAGACAGACTGTACTGATATGTTTAAGATGAACAAGTTGCTGGCTAAACATATCATTGCACTTGAACCTTCAAAACAGCCAGTTCCCAAGAAGCCCAAGGTTGTCGCGGACTCTGGAACAAAGAGTTCCCAGTCAGGTCCTTCTGTGATAATATCTGAAGCACTTGCAAATTTTTTTGGTGTTGGTGGGAGGGAGATGCTCCAGTCTGAGGTTTTGCAACGAATATGGGAATACATAAAGGTCAACCGTCTGGAGGATCCTCTGAATCCAATGGCTATTCTATGTGATGCAAAGCTTCAAGATATCTTTGGTTGTGAAAGCATCTCTGCATTGGGAATACCTGAAGTGTTGGCACGTCATCACATATTCAGGAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

366

Amino Acids

40.43

Weight (kDa)

9.16

Isoelectric Point (pI)

72.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	40 - 93	6.2e-08	DEK C terminal domain
SWIB	PF02201	187 - 258	5.5e-27	SWIB/MDM2 domain
SWIB	PF02201	289 - 360	4.1e-20	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30330
malus_domestica	MD03G1190700.v1.1 MD11G1207400.v1.1
prunus_persica	Prupe.4G228000_v2.0.a1
pyrus_communis	pycom03g14390 pycom11g18060
rosa_chinensis	RchiOBHm_Chr5g0056201
rosa_laevigata	RLG00000035063
rosa_multiflora	Rmu_co7981676.1_g000001 Rmu_sc0000680.1_g000024
rosa_roxburghii	Rroxscaffold_1G00024090
rosa_rugosa	Rorug05G0298000 Rorug05G0298100
rosa_samantha	Rh5AG369100 Rh5BG380200 Rh5CG403000 Rh5DG393200
rosa_wichuraiana	Rw0G004420 Rw0G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	25
AatII	GACGTC	1 cut(s)	198
AccII	CGCG	1 cut(s)	827
AclWI	GGATC	4 cut(s)	148, 262, 971, 984
AcoI	YGGCCR	2 cut(s)	226, 595
AcsI	RAATTY	1 cut(s)	889
AcuI	CTGAAG	2 cut(s)	897, 1083
AcyI	GRCGYC	2 cut(s)	168, 195
AfaI	GTAC	2 cut(s)	468, 733
AfiI	CCNNNNNNNGG	3 cut(s)	506, 928, 973
AgsI	TTSAA	3 cut(s)	785, 792, 1019
AjiI	CACGTC	1 cut(s)	1076
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	6 cut(s)	70, 140, 208, 220, 706, 1015
AluI	AGCT	6 cut(s)	70, 140, 208, 220, 706, 1015
Alw26I	GTCTC	2 cut(s)	97, 716
AlwI	GGATC	4 cut(s)	148, 262, 971, 984
Ama87I	CYCGRG	4 cut(s)	14, 209, 440, 446
AoxI	GGCC	4 cut(s)	226, 261, 538, 595
ApaI	GGGCCC	1 cut(s)	265
ApeKI	GCWGC	3 cut(s)	202, 205, 706
ApoI	RAATTY	1 cut(s)	889
AspLEI	GCGC	1 cut(s)	512
AspS9I	GGNCC	5 cut(s)	18, 261, 262, 539, 857
AsuC2I	CCSGG	3 cut(s)	15, 16, 672
AvaI	CYCGRG	4 cut(s)	14, 209, 440, 446
AvaII	GGWCC	2 cut(s)	18, 857
AxyI	CCTNAGG	1 cut(s)	501
BaeGI	GKGCMC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	597
BamHI	GGATCC	1 cut(s)	976
BanII	GRGCYC	3 cut(s)	265, 447, 453
BbvI	GCAGC	3 cut(s)	214, 217, 693
BccI	CCATC	2 cut(s)	500, 606
BciT130I	CCWGG	1 cut(s)	543
BcnI	CCSGG	3 cut(s)	15, 16, 672
BcoDI	GTCTC	2 cut(s)	97, 716
BfmI	CTRYAG	1 cut(s)	581
BfoI	RGCGCY	1 cut(s)	513
BisI	GCNGC	5 cut(s)	203, 206, 226, 497, 707
BlsI	GCNGC	5 cut(s)	204, 207, 227, 498, 708
Bme1390I	CCNGG	4 cut(s)	15, 16, 543, 672
Bme18I	GGWCC	2 cut(s)	18, 857
BmeT110I	CYCGRG	4 cut(s)	14, 209, 440, 446
BmgBI	CACGTC	1 cut(s)	1076
BmgT120I	GGNCC	5 cut(s)	18, 261, 262, 539, 857
BmiI	GGNNCC	3 cut(s)	19, 263, 978
BmrFI	CCNGG	4 cut(s)	15, 16, 543, 672
BmrI	ACTGGG	1 cut(s)	844
BmsI	GCATC	4 cut(s)	482, 906, 997, 1050
BmuI	ACTGGG	1 cut(s)	844
BplI	GAGNNNNNCTC	2 cut(s)	54, 86
BpmI	CTGGAG	3 cut(s)	335, 905, 992
BpuMI	CCSGG	3 cut(s)	15, 16, 672
BsaHI	GRCGYC	2 cut(s)	168, 195
BsaJI	CCNNGG	6 cut(s)	14, 541, 542, 611, 670, 816
BsaXI	ACNNNNNCTCC	6 cut(s)	221, 251, 292, 322, 645, 675
Bsc4I	CCNNNNNNNGG	3 cut(s)	506, 928, 973
Bse1I	ACTGG	3 cut(s)	800, 850, 922
Bse21I	CCTNAGG	1 cut(s)	501
Bse3DI	GCAATG	2 cut(s)	703, 774
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	6 cut(s)	14, 541, 542, 611, 670, 816
BseGI	GGATG	3 cut(s)	473, 511, 598
BseLI	CCNNNNNNNGG	3 cut(s)	506, 928, 973
BseMI	GCAATG	2 cut(s)	703, 774
BseMII	CTCAG	2 cut(s)	609, 918
BseNI	ACTGG	3 cut(s)	800, 850, 922
BseRI	GAGGAG	4 cut(s)	300, 318, 402, 450
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	3 cut(s)	214, 217, 693
BseYI	CCCAGC	2 cut(s)	315, 452
BsgI	GTGCAG	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	827
BshFI	GGCC	4 cut(s)	228, 263, 540, 597
BsiHKCI	CYCGRG	4 cut(s)	14, 209, 440, 446
BsiSI	CCGG	2 cut(s)	15, 672
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	3 cut(s)	506, 928, 973
BsmAI	GTCTC	2 cut(s)	97, 716
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	4 cut(s)	228, 263, 540, 597
BsoBI	CYCGRG	4 cut(s)	14, 209, 440, 446
Bsp120I	GGGCCC	1 cut(s)	261
Bsp1286I	GDGCHC	3 cut(s)	265, 447, 453
Bsp143I	GATC	4 cut(s)	153, 267, 976, 1094
BspANI	GGCC	4 cut(s)	228, 263, 540, 597
BspCNI	CTCAG	2 cut(s)	610, 919
BspFNI	CGCG	1 cut(s)	827
BspHI	TCATGA	1 cut(s)	1097
BspLI	GGNNCC	3 cut(s)	19, 263, 978
BspPI	GGATC	4 cut(s)	148, 262, 971, 984
BsrDI	GCAATG	2 cut(s)	703, 774
BsrI	ACTGG	3 cut(s)	800, 850, 922
BssECI	CCNNGG	6 cut(s)	14, 541, 542, 611, 670, 816
BssMI	GATC	4 cut(s)	153, 267, 976, 1094
BssNI	GRCGYC	2 cut(s)	168, 195
BssT1I	CCWWGG	1 cut(s)	816
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	4 cut(s)	22, 636, 731, 968
Bst6I	CTCTTC	2 cut(s)	45, 612
BstACI	GRCGYC	2 cut(s)	168, 195
BstC8I	GCNNGC	2 cut(s)	138, 762
BstDEI	CTNAG	3 cut(s)	501, 618, 927
BstF5I	GGATG	3 cut(s)	473, 511, 598
BstFNI	CGCG	1 cut(s)	827
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	1 cut(s)	512
BstKTI	GATC	4 cut(s)	156, 270, 979, 1097
BstMAI	GTCTC	2 cut(s)	97, 716
BstMBI	GATC	4 cut(s)	153, 267, 976, 1094
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 167
BstNI	CCWGG	1 cut(s)	543
BstSCI	CCNGG	4 cut(s)	13, 14, 541, 670
BstSFI	CTRYAG	1 cut(s)	581
BstSLI	GKGCMC	1 cut(s)	265
BstUI	CGCG	1 cut(s)	827
BstV1I	GCAGC	3 cut(s)	214, 217, 693
BstX2I	RGATCY	2 cut(s)	267, 976
BstYI	RGATCY	2 cut(s)	267, 976
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	4 cut(s)	228, 263, 540, 597
BtrI	CACGTC	1 cut(s)	1076
BtsCI	GGATG	3 cut(s)	473, 511, 598
Cac8I	GCNNGC	2 cut(s)	138, 762
CciI	TCATGA	1 cut(s)	1097
CfoI	GCGC	1 cut(s)	512
Cfr13I	GGNCC	5 cut(s)	18, 261, 262, 539, 857
Cfr9I	CCCGGG	1 cut(s)	14
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	467, 732
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	1 cut(s)	1098
CviQI	GTAC	2 cut(s)	467, 732
DdeI	CTNAG	3 cut(s)	501, 618, 927
DpnI	GATC	4 cut(s)	155, 269, 978, 1096
DpnII	GATC	4 cut(s)	153, 267, 976, 1094
DraI	TTTAAA	1 cut(s)	552
DrdI	GACNNNNNNGTC	1 cut(s)	25
DseDI	GACNNNNNNGTC	1 cut(s)	25
EaeI	YGGCCR	2 cut(s)	226, 595
Eam1104I	CTCTTC	2 cut(s)	45, 612
EarI	CTCTTC	2 cut(s)	45, 612
EciI	GGCGGA	2 cut(s)	373, 472
Eco130I	CCWWGG	1 cut(s)	816
Eco24I	GRGCYC	3 cut(s)	265, 447, 453
Eco32I	GATATC	2 cut(s)	132, 1024
Eco47I	GGWCC	2 cut(s)	18, 857
Eco57I	CTGAAG	2 cut(s)	897, 1083
Eco81I	CCTNAGG	1 cut(s)	501
Eco88I	CYCGRG	4 cut(s)	14, 209, 440, 446
EcoO109I	RGGNCCY	1 cut(s)	857
EcoRII	CCWGG	1 cut(s)	541
EcoRV	GATATC	2 cut(s)	132, 1024
EcoT14I	CCWWGG	1 cut(s)	816
EcoT38I	GRGCYC	3 cut(s)	265, 447, 453
ErhI	CCWWGG	1 cut(s)	816
FaeI	CATG	1 cut(s)	1101
FaiI	YATR	8 cut(s)	647, 740, 771, 946, 956, 1003, 1085, 1099
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	1 cut(s)	1097
FauI	CCCGC	4 cut(s)	300, 381, 478, 501
Fnu4HI	GCNGC	5 cut(s)	203, 206, 226, 497, 707
FokI	GGATG	3 cut(s)	460, 518, 585
FriOI	GRGCYC	3 cut(s)	265, 447, 453
Fsp4HI	GCNGC	5 cut(s)	203, 206, 226, 497, 707
GlaI	GCGC	1 cut(s)	511
GluI	GCNGC	5 cut(s)	203, 206, 226, 497, 707
GsaI	CCCAGC	2 cut(s)	319, 456
GsuI	CTGGAG	3 cut(s)	335, 905, 992
HaeII	RGCGCY	1 cut(s)	513
HaeIII	GGCC	4 cut(s)	228, 263, 540, 597
HapII	CCGG	2 cut(s)	15, 672
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	512
Hin1I	GRCGYC	2 cut(s)	168, 195
Hin1II	CATG	1 cut(s)	1101
Hin6I	GCGC	1 cut(s)	510
HinP1I	GCGC	1 cut(s)	510
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HindIII	AAGCTT	2 cut(s)	138, 1013
HinfI	GANTC	3 cut(s)	212, 830, 985
HpaII	CCGG	2 cut(s)	15, 672
Hpy166II	GTNNAC	1 cut(s)	964
Hpy188I	TCNGA	7 cut(s)	166, 250, 490, 612, 877, 928, 984
Hpy188III	TCNNGA	7 cut(s)	391, 721, 834, 971, 1019, 1090, 1098
Hpy8I	GTNNAC	1 cut(s)	964
Hpy99I	CGWCG	3 cut(s)	170, 197, 200
HpyAV	CCTTC	6 cut(s)	287, 397, 406, 432, 798, 870
HpyCH4III	ACNGT	4 cut(s)	22, 636, 731, 968
HpyCH4IV	ACGT	2 cut(s)	195, 1075
HpyCH4V	TGCA	7 cut(s)	202, 696, 779, 887, 937, 1010, 1049
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 167
HpyF3I	CTNAG	3 cut(s)	501, 618, 927
HpySE526I	ACGT	2 cut(s)	195, 1075
Hsp92I	GRCGYC	2 cut(s)	168, 195
Hsp92II	CATG	1 cut(s)	1101
HspAI	GCGC	1 cut(s)	510
Kzo9I	GATC	4 cut(s)	153, 267, 976, 1094
LmnI	GCTCC	1 cut(s)	924
Lsp1109I	GCAGC	3 cut(s)	214, 217, 693
LweI	GCATC	4 cut(s)	482, 906, 997, 1050
MaeII	ACGT	2 cut(s)	195, 1075
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	4 cut(s)	155, 269, 978, 1096
MboI	GATC	4 cut(s)	153, 267, 976, 1094
MboII	GAAGA	2 cut(s)	62, 599
MflI	RGATCY	2 cut(s)	267, 976
MhlI	GDGCHC	3 cut(s)	265, 447, 453
MlsI	TGGCCA	1 cut(s)	597
MluCI	AATT	3 cut(s)	364, 687, 889
MluNI	TGGCCA	1 cut(s)	597
MlyI	GAGTC	2 cut(s)	221, 824
MmeI	TCCRAC	4 cut(s)	189, 273, 513, 626
Mox20I	TGGCCA	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	597
MseI	TTAA	2 cut(s)	551, 744
Msp20I	TGGCCA	1 cut(s)	597
MspI	CCGG	2 cut(s)	15, 672
MspR9I	CCNGG	4 cut(s)	15, 16, 543, 672
MssI	GTTTAAAC	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	1 cut(s)	827
MwoI	GCNNNNNNNGC	2 cut(s)	146, 167
NciI	CCSGG	3 cut(s)	15, 16, 672
NdeII	GATC	4 cut(s)	153, 267, 976, 1094
NlaIII	CATG	1 cut(s)	1101
NlaIV	GGNNCC	3 cut(s)	19, 263, 978
NmeAIII	GCCGAG	1 cut(s)	201
PaeR7I	CTCGAG	1 cut(s)	209
PagI	TCATGA	1 cut(s)	1097
PasI	CCCWGGG	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	985
PkrI	GCNGC	5 cut(s)	204, 207, 227, 498, 708
PleI	GAGTC	2 cut(s)	220, 824
PmeI	GTTTAAAC	1 cut(s)	552
PpsI	GAGTC	2 cut(s)	220, 824
PpuMI	RGGWCCY	1 cut(s)	857
Psp5II	RGGWCCY	1 cut(s)	857
Psp6I	CCWGG	1 cut(s)	541
PspFI	CCCAGC	2 cut(s)	315, 452
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	3 cut(s)	19, 263, 978
PspOMI	GGGCCC	1 cut(s)	261
PspPI	GGNCC	5 cut(s)	18, 261, 262, 539, 857
PspPPI	RGGWCCY	1 cut(s)	857
PspXI	VCTCGAGB	1 cut(s)	209
PsuI	RGATCY	2 cut(s)	267, 976
RsaI	GTAC	2 cut(s)	468, 733
RsaNI	GTAC	2 cut(s)	467, 732
SaqAI	TTAA	2 cut(s)	551, 744
SatI	GCNGC	5 cut(s)	203, 206, 226, 497, 707
Sau3AI	GATC	4 cut(s)	153, 267, 976, 1094
Sau96I	GGNCC	5 cut(s)	18, 261, 262, 539, 857
SchI	GAGTC	2 cut(s)	221, 824
ScrFI	CCNGG	4 cut(s)	15, 16, 543, 672
SduI	GDGCHC	3 cut(s)	265, 447, 453
SfaNI	GCATC	4 cut(s)	482, 906, 997, 1050
SfcI	CTRYAG	1 cut(s)	581
Sfr274I	CTCGAG	1 cut(s)	209
SinI	GGWCC	2 cut(s)	18, 857
SlaI	CTCGAG	1 cut(s)	209
SmaI	CCCGGG	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	364, 687, 889
StyD4I	CCNGG	4 cut(s)	13, 14, 541, 670
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	4 cut(s)	22, 636, 731, 968
TaiI	ACGT	2 cut(s)	198, 1078
TaqI	TCGA	2 cut(s)	210, 720
TaqII	GACCGA	1 cut(s)	15
TasI	AATT	3 cut(s)	364, 687, 889
TatI	WGTACW	1 cut(s)	731
TauI	GCSGC	2 cut(s)	228, 499
TfiI	GAWTC	1 cut(s)	985
Tru1I	TTAA	2 cut(s)	551, 744
Tru9I	TTAA	2 cut(s)	551, 744
TseI	GCWGC	3 cut(s)	202, 205, 706
TspDTI	ATGAA	2 cut(s)	244, 764
TspGWI	ACGGA	1 cut(s)	466
TspMI	CCCGGG	1 cut(s)	14
VpaK11BI	GGWCC	2 cut(s)	18, 857
XapI	RAATTY	1 cut(s)	889
XhoI	CTCGAG	1 cut(s)	209
XmaI	CCCGGG	1 cut(s)	14
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.