Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0012597

Physical Location & Seq

Genomic Coordinates Reverse (-)

61571992 .. 61575324

Gene Structure 3333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG393200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCGACGGAGCAAGAGATATCGCAAGCTTTAGAAGCCCTGATCCACGCCTCCGACGCCCCGAAGTTCGCCACCCTAAACGACGTCGTGCAGCAGCTCGAGTCCAAGCTCGGCGGCCGCGACCTCTCCCACAAGGCCGACTTCATTCGGGCCCAGATCCACTACCTTCTCCAATCCCACCCGCCACGAACTCCCCCTCCTCCCCAGCCTCAGCCTCAGCCTCAGAATCAACCTCAACCTCCTCCTAAAGACCATTTTGCCCTCCAGCAAAACCCCAATTACCGCCCGCCTCCCTCCGCCTTCCAGACCTTCGCCTCCCACCCTCCTCAACTTCCTTCTCCCAAGCCCGAGCCCGAGCCCAGCACTACTCCCGTACCCGCATCCGTTTCCGCCTCCGACCCGCCGCCTAAGGATGGCGCTAAACCTAAACCAAAGAGAAAAGGAGGCCCAGGGGGTTTAAACAAACTTTGTGGTGTTTCGCCTGAACTACAGGTCATTGTTGGCCATCCAACTCTTCCAAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGAAAACACAACCTCCAAGACCCTGGTAACAAGAGGAAAATTATTTGCAATGATGAGCTGCGGTTGGTTTTCGAGACAGACTGTACTGATATGTTTAAGATGAACAAGTTGCTGGCTAAACATATCATTGCACTTGAACCTTCAAAACAGCCAGTTCCCAAGAAGCCCAAGGTTGTCGCGGACTCTGGAACAAAGAGTTACCAGACAGGTCCTTCTGTGATAATATCTGAAGCACTTGCAAATTTTTTTGGTGTTGGTGGGAAGGAGATGCTCCAGTCTGAGGTTTTGCAACGAATATGGGAATACATAAAGGTCAATCATCTGGAGGTATTTTCAGTCCCCTGCTCTTGCCCTCCAATGAAAAAAAAAAATGCAATAATTATTTTTTTATTTTTTTTTAGCTTACATTGGTCTTGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

325

Amino Acids

36.07

Weight (kDa)

9.26

Isoelectric Point (pI)

65.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	3 - 56	2.3e-08	DEK C terminal domain
SWIB	PF02201	156 - 227	4.5e-27	SWIB/MDM2 domain
SWIB	PF02201	258 - 293	3.4e-06	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30330
malus_domestica	MD03G1190700.v1.1 MD11G1207400.v1.1
prunus_persica	Prupe.4G228000_v2.0.a1
pyrus_communis	pycom03g14390 pycom11g18060
rosa_chinensis	RchiOBHm_Chr5g0056201
rosa_laevigata	RLG00000035063
rosa_multiflora	Rmu_co7981676.1_g000001 Rmu_sc0000680.1_g000024
rosa_roxburghii	Rroxscaffold_1G00024090
rosa_rugosa	Rorug05G0298000 Rorug05G0298100
rosa_samantha	Rh5AG369100 Rh5BG380200 Rh5CG403000 Rh5DG393200
rosa_wichuraiana	Rw0G004420 Rw0G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	976
AatII	GACGTC	1 cut(s)	87
AccII	CGCG	2 cut(s)	120, 734
AclWI	GGATC	2 cut(s)	37, 151
AcoI	YGGCCR	2 cut(s)	115, 502
AcsI	RAATTY	1 cut(s)	796
AcuI	CTGAAG	1 cut(s)	804
AcyI	GRCGYC	2 cut(s)	57, 84
AfaI	GTAC	2 cut(s)	375, 640
AfiI	CCNNNNNNNGG	2 cut(s)	413, 835
AgsI	TTSAA	2 cut(s)	692, 699
AjnI	CCWGG	2 cut(s)	448, 577
AloI	GAACNNNNNNTCC	2 cut(s)	181, 213
AluBI	AGCT	5 cut(s)	29, 97, 109, 613, 957
AluI	AGCT	5 cut(s)	29, 97, 109, 613, 957
Alw26I	GTCTC	1 cut(s)	623
AlwI	GGATC	2 cut(s)	37, 151
Ama87I	CYCGRG	3 cut(s)	98, 347, 353
AoxI	GGCC	5 cut(s)	115, 135, 150, 445, 502
ApaI	GGGCCC	1 cut(s)	154
ApeKI	GCWGC	3 cut(s)	91, 94, 613
ApoI	RAATTY	1 cut(s)	796
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	4 cut(s)	150, 151, 446, 764
AvaI	CYCGRG	3 cut(s)	98, 347, 353
AvaII	GGWCC	1 cut(s)	764
AxyI	CCTNAGG	1 cut(s)	408
BaeGI	GKGCMC	1 cut(s)	154
BaeI	ACNNNNGTAYC	2 cut(s)	357, 390
BalI	TGGCCA	1 cut(s)	504
BanII	GRGCYC	3 cut(s)	154, 354, 360
BbvCI	CCTCAGC	2 cut(s)	210, 216
BbvI	GCAGC	3 cut(s)	103, 106, 600
BccI	CCATC	2 cut(s)	407, 513
BciT130I	CCWGG	2 cut(s)	450, 579
BcoDI	GTCTC	1 cut(s)	623
BfmI	CTRYAG	1 cut(s)	488
BfoI	RGCGCY	1 cut(s)	420
BisI	GCNGC	6 cut(s)	92, 95, 115, 118, 404, 614
BlsI	GCNGC	6 cut(s)	93, 96, 116, 119, 405, 615
Bme1390I	CCNGG	2 cut(s)	450, 579
Bme18I	GGWCC	1 cut(s)	764
BmeT110I	CYCGRG	3 cut(s)	98, 347, 353
BmgT120I	GGNCC	4 cut(s)	150, 151, 446, 764
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	2 cut(s)	450, 579
BmsI	GCATC	2 cut(s)	389, 813
BpmI	CTGGAG	3 cut(s)	248, 812, 899
Bpu10I	CCTNAGC	2 cut(s)	210, 216
BsaHI	GRCGYC	2 cut(s)	57, 84
BsaJI	CCNNGG	5 cut(s)	448, 449, 518, 577, 723
BsaXI	ACNNNNNCTCC	4 cut(s)	181, 211, 552, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 835
Bse1I	ACTGG	2 cut(s)	707, 829
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	2 cut(s)	610, 681
BseBI	CCWGG	2 cut(s)	450, 579
BseDI	CCNNGG	5 cut(s)	448, 449, 518, 577, 723
BseGI	GGATG	3 cut(s)	380, 418, 505
BseLI	CCNNNNNNNGG	2 cut(s)	413, 835
BseMI	GCAATG	2 cut(s)	610, 681
BseMII	CTCAG	5 cut(s)	224, 230, 236, 516, 825
BseNI	ACTGG	2 cut(s)	707, 829
BseRI	GAGGAG	3 cut(s)	189, 231, 315
BseSI	GKGCMC	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	103, 106, 600
BseYI	CCCAGC	2 cut(s)	204, 359
BsgI	GTGCAG	1 cut(s)	110
Bsh1236I	CGCG	2 cut(s)	120, 734
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	5 cut(s)	117, 137, 152, 447, 504
BsiEI	CGRYCG	1 cut(s)	118
BsiHKCI	CYCGRG	3 cut(s)	98, 347, 353
BslFI	GGGAC	1 cut(s)	878
BslI	CCNNNNNNNGG	2 cut(s)	413, 835
BsmAI	GTCTC	1 cut(s)	623
BsmFI	GGGAC	1 cut(s)	878
BsnI	GGCC	5 cut(s)	117, 137, 152, 447, 504
BsoBI	CYCGRG	3 cut(s)	98, 347, 353
Bsp120I	GGGCCC	1 cut(s)	150
Bsp1286I	GDGCHC	3 cut(s)	154, 354, 360
Bsp143I	GATC	2 cut(s)	42, 156
BspANI	GGCC	5 cut(s)	117, 137, 152, 447, 504
BspCNI	CTCAG	5 cut(s)	223, 229, 235, 517, 826
BspFNI	CGCG	2 cut(s)	120, 734
BspLI	GGNNCC	1 cut(s)	152
BspPI	GGATC	2 cut(s)	37, 151
BsrDI	GCAATG	2 cut(s)	610, 681
BsrI	ACTGG	2 cut(s)	707, 829
BssECI	CCNNGG	5 cut(s)	448, 449, 518, 577, 723
BssMI	GATC	2 cut(s)	42, 156
BssNI	GRCGYC	2 cut(s)	57, 84
BssT1I	CCWWGG	2 cut(s)	518, 723
Bst2UI	CCWGG	2 cut(s)	450, 579
Bst4CI	ACNGT	2 cut(s)	543, 638
Bst6I	CTCTTC	1 cut(s)	519
BstACI	GRCGYC	2 cut(s)	57, 84
BstC8I	GCNNGC	3 cut(s)	27, 287, 669
BstDEI	CTNAG	6 cut(s)	210, 216, 222, 408, 525, 834
BstF5I	GGATG	3 cut(s)	380, 418, 505
BstFNI	CGCG	2 cut(s)	120, 734
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	2 cut(s)	45, 159
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	2 cut(s)	42, 156
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 56
BstNI	CCWGG	2 cut(s)	450, 579
BstSCI	CCNGG	2 cut(s)	448, 577
BstSFI	CTRYAG	1 cut(s)	488
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	2 cut(s)	120, 734
BstV1I	GCAGC	3 cut(s)	103, 106, 600
BstX2I	RGATCY	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	156
BstZI	CGGCCG	1 cut(s)	115
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	5 cut(s)	117, 137, 152, 447, 504
BtsCI	GGATG	3 cut(s)	380, 418, 505
Cac8I	GCNNGC	3 cut(s)	27, 287, 669
CciNI	GCGGCCGC	1 cut(s)	115
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	4 cut(s)	150, 151, 446, 764
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	374, 639
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviQI	GTAC	2 cut(s)	374, 639
DdeI	CTNAG	6 cut(s)	210, 216, 222, 408, 525, 834
DpnI	GATC	2 cut(s)	44, 158
DpnII	GATC	2 cut(s)	42, 156
DraI	TTTAAA	1 cut(s)	459
EaeI	YGGCCR	2 cut(s)	115, 502
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
EciI	GGCGGA	2 cut(s)	286, 379
EclXI	CGGCCG	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	518, 723
Eco24I	GRGCYC	3 cut(s)	154, 354, 360
Eco32I	GATATC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	764
Eco52I	CGGCCG	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	804
Eco81I	CCTNAGG	1 cut(s)	408
Eco88I	CYCGRG	3 cut(s)	98, 347, 353
EcoO109I	RGGNCCY	1 cut(s)	764
EcoRII	CCWGG	2 cut(s)	448, 577
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	2 cut(s)	518, 723
EcoT38I	GRGCYC	3 cut(s)	154, 354, 360
ErhI	CCWWGG	2 cut(s)	518, 723
FaiI	YATR	6 cut(s)	554, 647, 678, 853, 863, 976
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	878
FauI	CCCGC	4 cut(s)	189, 294, 385, 408
Fnu4HI	GCNGC	6 cut(s)	92, 95, 115, 118, 404, 614
FokI	GGATG	3 cut(s)	367, 425, 492
FriOI	GRGCYC	3 cut(s)	154, 354, 360
Fsp4HI	GCNGC	6 cut(s)	92, 95, 115, 118, 404, 614
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	6 cut(s)	92, 95, 115, 118, 404, 614
GsaI	CCCAGC	2 cut(s)	208, 363
GsuI	CTGGAG	3 cut(s)	248, 812, 899
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	5 cut(s)	117, 137, 152, 447, 504
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	419
Hin1I	GRCGYC	2 cut(s)	57, 84
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	3 cut(s)	101, 226, 737
Hpy188I	TCNGA	5 cut(s)	55, 225, 397, 784, 835
Hpy188III	TCNNGA	4 cut(s)	304, 628, 741, 878
Hpy99I	CGWCG	4 cut(s)	10, 59, 86, 89
HpyAV	CCTTC	7 cut(s)	176, 310, 319, 345, 705, 777, 811
HpyCH4III	ACNGT	2 cut(s)	543, 638
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	6 cut(s)	91, 603, 686, 794, 844, 929
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 56
HpyF3I	CTNAG	6 cut(s)	210, 216, 222, 408, 525, 834
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	2 cut(s)	57, 84
HspAI	GCGC	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	42, 156
LmnI	GCTCC	2 cut(s)	10, 831
Lsp1109I	GCAGC	3 cut(s)	103, 106, 600
LweI	GCATC	2 cut(s)	389, 813
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	581, 752
MalI	GATC	2 cut(s)	44, 158
MboI	GATC	2 cut(s)	42, 156
MboII	GAAGA	1 cut(s)	506
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	3 cut(s)	154, 354, 360
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	4 cut(s)	277, 594, 796, 933
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	2 cut(s)	110, 731
MmeI	TCCRAC	3 cut(s)	78, 420, 533
Mox20I	TGGCCA	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	2 cut(s)	458, 651
Msp20I	TGGCCA	1 cut(s)	504
MspR9I	CCNGG	2 cut(s)	450, 579
MssI	GTTTAAAC	1 cut(s)	459
MvaI	CCWGG	2 cut(s)	450, 579
MvnI	CGCG	2 cut(s)	120, 734
MwoI	GCNNNNNNNGC	2 cut(s)	35, 56
NdeII	GATC	2 cut(s)	42, 156
NlaIV	GGNNCC	1 cut(s)	152
NmeAIII	GCCGAG	1 cut(s)	90
NotI	GCGGCCGC	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	98
PasI	CCCWGGG	1 cut(s)	449
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	6 cut(s)	93, 96, 116, 119, 405, 615
PleI	GAGTC	2 cut(s)	109, 731
PmeI	GTTTAAAC	1 cut(s)	459
PpsI	GAGTC	2 cut(s)	109, 731
PpuMI	RGGWCCY	1 cut(s)	764
PsiI	TTATAA	1 cut(s)	976
Psp5II	RGGWCCY	1 cut(s)	764
Psp6I	CCWGG	2 cut(s)	448, 577
PspFI	CCCAGC	2 cut(s)	204, 359
PspGI	CCWGG	2 cut(s)	448, 577
PspN4I	GGNNCC	1 cut(s)	152
PspOMI	GGGCCC	1 cut(s)	150
PspPI	GGNCC	4 cut(s)	150, 151, 446, 764
PspPPI	RGGWCCY	1 cut(s)	764
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	2 cut(s)	375, 640
RsaNI	GTAC	2 cut(s)	374, 639
SaqAI	TTAA	2 cut(s)	458, 651
SatI	GCNGC	6 cut(s)	92, 95, 115, 118, 404, 614
Sau3AI	GATC	2 cut(s)	42, 156
Sau96I	GGNCC	4 cut(s)	150, 151, 446, 764
SchI	GAGTC	2 cut(s)	110, 731
ScrFI	CCNGG	2 cut(s)	450, 579
SduI	GDGCHC	3 cut(s)	154, 354, 360
SfaNI	GCATC	2 cut(s)	389, 813
SfcI	CTRYAG	1 cut(s)	488
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	764
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	4 cut(s)	277, 594, 796, 933
StyD4I	CCNGG	2 cut(s)	448, 577
StyI	CCWWGG	2 cut(s)	518, 723
TaaI	ACNGT	2 cut(s)	543, 638
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	99, 627
TasI	AATT	4 cut(s)	277, 594, 796, 933
TatI	WGTACW	1 cut(s)	638
TauI	GCSGC	3 cut(s)	117, 120, 406
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	2 cut(s)	458, 651
Tru9I	TTAA	2 cut(s)	458, 651
TseI	GCWGC	3 cut(s)	91, 94, 613
TspDTI	ATGAA	3 cut(s)	133, 671, 929
TspGWI	ACGGA	2 cut(s)	23, 373
VpaK11BI	GGWCC	1 cut(s)	764
XapI	RAATTY	1 cut(s)	796
XhoI	CTCGAG	1 cut(s)	98
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.