Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00564

Orthogroup ID

OG0012597

Physical Location & Seq

Genomic Coordinates Forward (+)

182470 .. 184808

Gene Structure 2339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G012660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCGACGGAGCAAGAGATATCGCAAGCTTTAGAAGCCCTGATCCACGCCTCCGACGCCCCGAAGTTCGCCACCCTAAACGACGTCGTGCAACAGCTCGAGTCCAAGCTCGGCGGCCGCGACCTCTCCCACAAGGCCGACTTCATTCGGGCCCAGATCCACTACCTTCTCCAATCCCACCCGCCACCAACTCCCCCTCCTCCCCAGCCTCAGAATCAACCTCAACCTCCTCCTAAAGACCATTTTGCCCTCCAGCAAAACCCCAATTACCGCCCGCCTCCCTCCGCCTTCCAGACCTTCGCCTCCCACCCTCCTCAACTTCCTTCTCCCAAGCCCGAGCCCGAGCCCAGCACTACTCCCGTACCCGCATCCGTTTCCGCCTCCGACCCGCCGCCTAAGGATGGCGCTAAACCTAAACCAAAGAGAAAAGGAGGCCCAGGGGGTTTAAACAAACTTTGTGGTGTTTCGCCTGAACTACAGGTCATTGTTGGCCATCCAACTCTTCCAAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGAAAACACAACCTCCAAGACCCTGGTAACAAGAGGAAAATTATTTGCAATGATGAGCTGCGGTTGGTTTTCGAGACAGACTGTACTGATATGTTTAAGATGAACAAGTTGCTGGCTAAACATATCATTGCACTTGAACCTTCAAAACAGCCAGTTCCCAAGAAGCCCAAGGTTGTCGCGGACTCTGGAACAAAGAGTTACCAGACAGGTCCTTCTGTGATAATATCTGAAGCACTTGCAAATTTTTTTGGTGTTGGTGGGAGGGAGATGCTCCAGTCTGAGGTTTTGCAACGAATATGGGAATACATAAAGGTCAATCATCTGGAGGATCCTCTGAATCCAATGGCTATTCTATGTGATGCAAAGCTTCAAGATATCTTTGGTTGTGAAAGCATCTCTGCATTGGGAATACCTGAAGTGTTGGCACGTCATCACATATTCAGGAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

331

Amino Acids

36.54

Weight (kDa)

8.85

Isoelectric Point (pI)

68.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	3 - 56	2.3e-08	DEK C terminal domain
SWIB	PF02201	152 - 223	4.7e-27	SWIB/MDM2 domain
SWIB	PF02201	254 - 325	3.6e-20	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30330
malus_domestica	MD03G1190700.v1.1 MD11G1207400.v1.1
prunus_persica	Prupe.4G228000_v2.0.a1
pyrus_communis	pycom03g14390 pycom11g18060
rosa_chinensis	RchiOBHm_Chr5g0056201
rosa_laevigata	RLG00000035063
rosa_multiflora	Rmu_co7981676.1_g000001 Rmu_sc0000680.1_g000024
rosa_roxburghii	Rroxscaffold_1G00024090
rosa_rugosa	Rorug05G0298000 Rorug05G0298100
rosa_samantha	Rh5AG369100 Rh5BG380200 Rh5CG403000 Rh5DG393200
rosa_wichuraiana	Rw0G004420 Rw0G012660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccII	CGCG	2 cut(s)	120, 722
AclWI	GGATC	4 cut(s)	37, 151, 866, 879
AcoI	YGGCCR	2 cut(s)	115, 490
AcsI	RAATTY	1 cut(s)	784
AcuI	CTGAAG	2 cut(s)	792, 978
AcyI	GRCGYC	2 cut(s)	57, 84
AfaI	GTAC	2 cut(s)	363, 628
AfiI	CCNNNNNNNGG	2 cut(s)	401, 823
AgsI	TTSAA	3 cut(s)	680, 687, 914
AjiI	CACGTC	1 cut(s)	971
AjnI	CCWGG	2 cut(s)	436, 565
AluBI	AGCT	5 cut(s)	29, 97, 109, 601, 910
AluI	AGCT	5 cut(s)	29, 97, 109, 601, 910
Alw26I	GTCTC	1 cut(s)	611
AlwI	GGATC	4 cut(s)	37, 151, 866, 879
Ama87I	CYCGRG	3 cut(s)	98, 335, 341
AoxI	GGCC	5 cut(s)	115, 135, 150, 433, 490
ApaI	GGGCCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	1 cut(s)	784
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	4 cut(s)	150, 151, 434, 752
AvaI	CYCGRG	3 cut(s)	98, 335, 341
AvaII	GGWCC	1 cut(s)	752
AxyI	CCTNAGG	1 cut(s)	396
BaeGI	GKGCMC	1 cut(s)	154
BaeI	ACNNNNGTAYC	2 cut(s)	345, 378
BalI	TGGCCA	1 cut(s)	492
BamHI	GGATCC	1 cut(s)	871
BanII	GRGCYC	3 cut(s)	154, 342, 348
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	2 cut(s)	395, 501
BciT130I	CCWGG	2 cut(s)	438, 567
BcoDI	GTCTC	1 cut(s)	611
BfmI	CTRYAG	1 cut(s)	476
BfoI	RGCGCY	1 cut(s)	408
BisI	GCNGC	4 cut(s)	115, 118, 392, 602
BlsI	GCNGC	4 cut(s)	116, 119, 393, 603
Bme1390I	CCNGG	2 cut(s)	438, 567
Bme18I	GGWCC	1 cut(s)	752
BmeT110I	CYCGRG	3 cut(s)	98, 335, 341
BmgBI	CACGTC	1 cut(s)	971
BmgT120I	GGNCC	4 cut(s)	150, 151, 434, 752
BmiI	GGNNCC	2 cut(s)	152, 873
BmrFI	CCNGG	2 cut(s)	438, 567
BmsI	GCATC	4 cut(s)	377, 801, 892, 945
BpmI	CTGGAG	3 cut(s)	236, 800, 887
BsaHI	GRCGYC	2 cut(s)	57, 84
BsaJI	CCNNGG	5 cut(s)	436, 437, 506, 565, 711
BsaXI	ACNNNNNCTCC	4 cut(s)	181, 211, 540, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 823
Bse1I	ACTGG	2 cut(s)	695, 817
Bse21I	CCTNAGG	1 cut(s)	396
Bse3DI	GCAATG	2 cut(s)	598, 669
BseBI	CCWGG	2 cut(s)	438, 567
BseDI	CCNNGG	5 cut(s)	436, 437, 506, 565, 711
BseGI	GGATG	3 cut(s)	368, 406, 493
BseLI	CCNNNNNNNGG	2 cut(s)	401, 823
BseMI	GCAATG	2 cut(s)	598, 669
BseMII	CTCAG	3 cut(s)	224, 504, 813
BseNI	ACTGG	2 cut(s)	695, 817
BseRI	GAGGAG	3 cut(s)	189, 219, 303
BseSI	GKGCMC	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	588
BseYI	CCCAGC	2 cut(s)	204, 347
Bsh1236I	CGCG	2 cut(s)	120, 722
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	5 cut(s)	117, 137, 152, 435, 492
BsiEI	CGRYCG	1 cut(s)	118
BsiHKCI	CYCGRG	3 cut(s)	98, 335, 341
BslI	CCNNNNNNNGG	2 cut(s)	401, 823
BsmAI	GTCTC	1 cut(s)	611
BsnI	GGCC	5 cut(s)	117, 137, 152, 435, 492
BsoBI	CYCGRG	3 cut(s)	98, 335, 341
Bsp120I	GGGCCC	1 cut(s)	150
Bsp1286I	GDGCHC	3 cut(s)	154, 342, 348
Bsp143I	GATC	4 cut(s)	42, 156, 871, 989
BspANI	GGCC	5 cut(s)	117, 137, 152, 435, 492
BspCNI	CTCAG	3 cut(s)	223, 505, 814
BspFNI	CGCG	2 cut(s)	120, 722
BspHI	TCATGA	1 cut(s)	992
BspLI	GGNNCC	2 cut(s)	152, 873
BspPI	GGATC	4 cut(s)	37, 151, 866, 879
BsrDI	GCAATG	2 cut(s)	598, 669
BsrI	ACTGG	2 cut(s)	695, 817
BssECI	CCNNGG	5 cut(s)	436, 437, 506, 565, 711
BssMI	GATC	4 cut(s)	42, 156, 871, 989
BssNI	GRCGYC	2 cut(s)	57, 84
BssT1I	CCWWGG	2 cut(s)	506, 711
Bst2UI	CCWGG	2 cut(s)	438, 567
Bst4CI	ACNGT	2 cut(s)	531, 626
Bst6I	CTCTTC	1 cut(s)	507
BstACI	GRCGYC	2 cut(s)	57, 84
BstC8I	GCNNGC	3 cut(s)	27, 275, 657
BstDEI	CTNAG	4 cut(s)	210, 396, 513, 822
BstF5I	GGATG	3 cut(s)	368, 406, 493
BstFNI	CGCG	2 cut(s)	120, 722
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	4 cut(s)	45, 159, 874, 992
BstMAI	GTCTC	1 cut(s)	611
BstMBI	GATC	4 cut(s)	42, 156, 871, 989
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 56
BstNI	CCWGG	2 cut(s)	438, 567
BstSCI	CCNGG	2 cut(s)	436, 565
BstSFI	CTRYAG	1 cut(s)	476
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	2 cut(s)	120, 722
BstV1I	GCAGC	1 cut(s)	588
BstX2I	RGATCY	2 cut(s)	156, 871
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	2 cut(s)	156, 871
BstZI	CGGCCG	1 cut(s)	115
Bsu36I	CCTNAGG	1 cut(s)	396
BsuRI	GGCC	5 cut(s)	117, 137, 152, 435, 492
BtrI	CACGTC	1 cut(s)	971
BtsCI	GGATG	3 cut(s)	368, 406, 493
Cac8I	GCNNGC	3 cut(s)	27, 275, 657
CciI	TCATGA	1 cut(s)	992
CciNI	GCGGCCGC	1 cut(s)	115
CfoI	GCGC	1 cut(s)	407
Cfr13I	GGNCC	4 cut(s)	150, 151, 434, 752
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	362, 627
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CviAII	CATG	1 cut(s)	993
CviQI	GTAC	2 cut(s)	362, 627
DdeI	CTNAG	4 cut(s)	210, 396, 513, 822
DpnI	GATC	4 cut(s)	44, 158, 873, 991
DpnII	GATC	4 cut(s)	42, 156, 871, 989
DraI	TTTAAA	1 cut(s)	447
EaeI	YGGCCR	2 cut(s)	115, 490
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
EciI	GGCGGA	2 cut(s)	274, 367
EclXI	CGGCCG	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	506, 711
Eco24I	GRGCYC	3 cut(s)	154, 342, 348
Eco32I	GATATC	2 cut(s)	21, 919
Eco47I	GGWCC	1 cut(s)	752
Eco52I	CGGCCG	1 cut(s)	115
Eco57I	CTGAAG	2 cut(s)	792, 978
Eco81I	CCTNAGG	1 cut(s)	396
Eco88I	CYCGRG	3 cut(s)	98, 335, 341
EcoO109I	RGGNCCY	1 cut(s)	752
EcoRII	CCWGG	2 cut(s)	436, 565
EcoRV	GATATC	2 cut(s)	21, 919
EcoT14I	CCWWGG	2 cut(s)	506, 711
EcoT38I	GRGCYC	3 cut(s)	154, 342, 348
ErhI	CCWWGG	2 cut(s)	506, 711
FaeI	CATG	1 cut(s)	996
FaiI	YATR	8 cut(s)	542, 635, 666, 841, 851, 898, 980, 994
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	1 cut(s)	992
FauI	CCCGC	4 cut(s)	189, 282, 373, 396
Fnu4HI	GCNGC	4 cut(s)	115, 118, 392, 602
FokI	GGATG	3 cut(s)	355, 413, 480
FriOI	GRGCYC	3 cut(s)	154, 342, 348
Fsp4HI	GCNGC	4 cut(s)	115, 118, 392, 602
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	4 cut(s)	115, 118, 392, 602
GsaI	CCCAGC	2 cut(s)	208, 351
GsuI	CTGGAG	3 cut(s)	236, 800, 887
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	5 cut(s)	117, 137, 152, 435, 492
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	407
Hin1I	GRCGYC	2 cut(s)	57, 84
Hin1II	CATG	1 cut(s)	996
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HindIII	AAGCTT	2 cut(s)	27, 908
HinfI	GANTC	4 cut(s)	101, 214, 725, 880
Hpy188I	TCNGA	6 cut(s)	55, 213, 385, 772, 823, 879
Hpy188III	TCNNGA	7 cut(s)	292, 616, 729, 866, 914, 985, 993
Hpy99I	CGWCG	4 cut(s)	10, 59, 86, 89
HpyAV	CCTTC	6 cut(s)	176, 298, 307, 333, 693, 765
HpyCH4III	ACNGT	2 cut(s)	531, 626
HpyCH4IV	ACGT	2 cut(s)	84, 970
HpyCH4V	TGCA	7 cut(s)	91, 591, 674, 782, 832, 905, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 56
HpyF3I	CTNAG	4 cut(s)	210, 396, 513, 822
HpySE526I	ACGT	2 cut(s)	84, 970
Hsp92I	GRCGYC	2 cut(s)	57, 84
Hsp92II	CATG	1 cut(s)	996
HspAI	GCGC	1 cut(s)	405
Kzo9I	GATC	4 cut(s)	42, 156, 871, 989
LmnI	GCTCC	2 cut(s)	10, 819
Lsp1109I	GCAGC	1 cut(s)	588
LweI	GCATC	4 cut(s)	377, 801, 892, 945
MaeII	ACGT	2 cut(s)	84, 970
MaeIII	GTNAC	2 cut(s)	569, 740
MalI	GATC	4 cut(s)	44, 158, 873, 991
MboI	GATC	4 cut(s)	42, 156, 871, 989
MboII	GAAGA	1 cut(s)	494
MflI	RGATCY	2 cut(s)	156, 871
MhlI	GDGCHC	3 cut(s)	154, 342, 348
MlsI	TGGCCA	1 cut(s)	492
MluCI	AATT	3 cut(s)	265, 582, 784
MluNI	TGGCCA	1 cut(s)	492
MlyI	GAGTC	2 cut(s)	110, 719
MmeI	TCCRAC	3 cut(s)	78, 408, 521
Mox20I	TGGCCA	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	492
MseI	TTAA	2 cut(s)	446, 639
Msp20I	TGGCCA	1 cut(s)	492
MspR9I	CCNGG	2 cut(s)	438, 567
MssI	GTTTAAAC	1 cut(s)	447
MvaI	CCWGG	2 cut(s)	438, 567
MvnI	CGCG	2 cut(s)	120, 722
MwoI	GCNNNNNNNGC	2 cut(s)	35, 56
NdeII	GATC	4 cut(s)	42, 156, 871, 989
NlaIII	CATG	1 cut(s)	996
NlaIV	GGNNCC	2 cut(s)	152, 873
NmeAIII	GCCGAG	1 cut(s)	90
NotI	GCGGCCGC	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	992
PasI	CCCWGGG	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	214, 880
PkrI	GCNGC	4 cut(s)	116, 119, 393, 603
PleI	GAGTC	2 cut(s)	109, 719
PmeI	GTTTAAAC	1 cut(s)	447
PpsI	GAGTC	2 cut(s)	109, 719
PpuMI	RGGWCCY	1 cut(s)	752
Psp5II	RGGWCCY	1 cut(s)	752
Psp6I	CCWGG	2 cut(s)	436, 565
PspFI	CCCAGC	2 cut(s)	204, 347
PspGI	CCWGG	2 cut(s)	436, 565
PspN4I	GGNNCC	2 cut(s)	152, 873
PspOMI	GGGCCC	1 cut(s)	150
PspPI	GGNCC	4 cut(s)	150, 151, 434, 752
PspPPI	RGGWCCY	1 cut(s)	752
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	156, 871
RsaI	GTAC	2 cut(s)	363, 628
RsaNI	GTAC	2 cut(s)	362, 627
SaqAI	TTAA	2 cut(s)	446, 639
SatI	GCNGC	4 cut(s)	115, 118, 392, 602
Sau3AI	GATC	4 cut(s)	42, 156, 871, 989
Sau96I	GGNCC	4 cut(s)	150, 151, 434, 752
SchI	GAGTC	2 cut(s)	110, 719
ScrFI	CCNGG	2 cut(s)	438, 567
SduI	GDGCHC	3 cut(s)	154, 342, 348
SfaNI	GCATC	4 cut(s)	377, 801, 892, 945
SfcI	CTRYAG	1 cut(s)	476
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	752
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	265, 582, 784
StyD4I	CCNGG	2 cut(s)	436, 565
StyI	CCWWGG	2 cut(s)	506, 711
TaaI	ACNGT	2 cut(s)	531, 626
TaiI	ACGT	2 cut(s)	87, 973
TaqI	TCGA	2 cut(s)	99, 615
TasI	AATT	3 cut(s)	265, 582, 784
TatI	WGTACW	1 cut(s)	626
TauI	GCSGC	3 cut(s)	117, 120, 394
TfiI	GAWTC	2 cut(s)	214, 880
Tru1I	TTAA	2 cut(s)	446, 639
Tru9I	TTAA	2 cut(s)	446, 639
TseI	GCWGC	1 cut(s)	601
TspDTI	ATGAA	2 cut(s)	133, 659
TspGWI	ACGGA	2 cut(s)	23, 361
VpaK11BI	GGWCC	1 cut(s)	752
XapI	RAATTY	1 cut(s)	784
XhoI	CTCGAG	1 cut(s)	98
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.