Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006617

Physical Location & Seq

Genomic Coordinates Forward (+)

29458484 .. 29458828

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGATGTCACTCTCCGTCTCTCTCTCTCTCCCCTCCGATTCCAACTCCGACGCCGACCTCGCGTCCGTCCCTCGCCCCATGATCGATGAAATCCTCAACGACACCGATTCCTCCACGTCACCGTCCCCCTCCTCCTCCTCGCGCAGCAGCTCCGCCTTATCTCAGTTCCTCGCCTCTGATCCCAAACTGCCCCAAAGCGACGCTGTTTCCGTCGTCACGACGCGGTCGAGTCAGTTGGAGGAGAAGTCGGTCCAGTCGGGTTTGAATTTGTATAGTCGAGCTAGGTCTGGTGACTTCCCGAACGATCAGATCGGGATTGCAACCCCGGCCAGGCTAGGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0006810 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016050 GO:0016192 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0034058 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0097708 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

ANAPC4_WD40 Clathrin Vps8

Protein Analysis

115

Amino Acids

11.92

Weight (kDa)

4.37

Isoelectric Point (pI)

77.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00800 AT4G00800
fragaria_vesca	FvH4_3g34060 FvH4_7g01070 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640
malus_domestica	MD07G1159400.v1.1
prunus_persica	Prupe.2G197500_v2.0.a1
pyrus_communis	pycom01g11250 pycom07g15600
rosa_chinensis	RchiOBHm_Chr1g0361071
rosa_laevigata	RLG00000027750
rosa_multiflora	Rmu_sc0003333.1_g000009 Rmu_sc0014603.1_g000002 Rmu_sc0024329.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295450
rosa_rugosa	Rorug01G0285300
rosa_samantha	Rh1AG296700 Rh1BG261000 Rh1CG278300 Rh1DG291000
rosa_wichuraiana	Rw1G026210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	62, 142, 223
AciI	CCGC	2 cut(s)	153, 223
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	330, 336
AgsI	TTSAA	1 cut(s)	265
AhdI	GACNNNNNGTC	1 cut(s)	61
AjiI	CACGTC	1 cut(s)	117
AjnI	CCWGG	1 cut(s)	329
AluBI	AGCT	2 cut(s)	150, 281
AluI	AGCT	2 cut(s)	150, 281
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	2 cut(s)	144, 147
ApoI	RAATTY	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	250
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	2 cut(s)	111, 302
AvaII	GGWCC	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	156, 159
BciT130I	CCWGG	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	2 cut(s)	282, 335
BisI	GCNGC	2 cut(s)	145, 148
BlsI	GCNGC	2 cut(s)	146, 149
Bme1390I	CCNGG	2 cut(s)	326, 331
Bme18I	GGWCC	1 cut(s)	250
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	250
BmrFI	CCNGG	2 cut(s)	326, 331
BpuMI	CCSGG	1 cut(s)	326
Bsa29I	ATCGAT	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 336
Bse1I	ACTGG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	331
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	330, 336
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	4 cut(s)	121, 124, 127, 254
BseXI	GCAGC	2 cut(s)	156, 159
Bsh1236I	CGCG	3 cut(s)	62, 142, 223
Bsh1285I	CGRYCG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	329
BshVI	ATCGAT	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	2 cut(s)	53, 109
BslI	CCNNNNNNNGG	2 cut(s)	330, 336
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	2 cut(s)	53, 109
BsnI	GGCC	1 cut(s)	329
Bsp143I	GATC	4 cut(s)	81, 178, 304, 309
BspACI	CCGC	2 cut(s)	153, 223
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	175
BspDI	ATCGAT	1 cut(s)	84
BspFNI	CGCG	3 cut(s)	62, 142, 223
BspPI	GGATC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	4 cut(s)	81, 178, 304, 309
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	162
BstFNI	CGCG	3 cut(s)	62, 142, 223
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	4 cut(s)	84, 181, 307, 312
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	4 cut(s)	81, 178, 304, 309
BstMCI	CGRYCG	1 cut(s)	227
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 326
BstNI	CCWGG	1 cut(s)	331
BstSCI	CCNGG	2 cut(s)	324, 329
BstUI	CGCG	3 cut(s)	62, 142, 223
BstV1I	GCAGC	2 cut(s)	156, 159
Bsu15I	ATCGAT	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	329
BsuTUI	ATCGAT	1 cut(s)	84
BtrI	CACGTC	1 cut(s)	117
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	250
ClaI	ATCGAT	1 cut(s)	84
CseI	GACGC	4 cut(s)	51, 59, 209, 229
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	4 cut(s)	150, 281, 329, 334
CviKI_1	RGCY	4 cut(s)	150, 281, 329, 334
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	4 cut(s)	83, 180, 306, 311
DpnII	GATC	4 cut(s)	81, 178, 304, 309
DriI	GACNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	327
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	1 cut(s)	82
FaiI	YATR	2 cut(s)	80, 273
FaqI	GGGAC	2 cut(s)	53, 109
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	145, 148
Fsp4HI	GCNGC	2 cut(s)	145, 148
FspBI	CTAG	2 cut(s)	282, 335
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	2 cut(s)	145, 148
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	326
HgaI	GACGC	4 cut(s)	51, 59, 209, 229
HhaI	GCGC	1 cut(s)	144
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HinfI	GANTC	3 cut(s)	38, 107, 229
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	2 cut(s)	111, 302
Hpy188I	TCNGA	4 cut(s)	37, 49, 178, 309
Hpy188III	TCNNGA	3 cut(s)	217, 298, 313
Hpy99I	CGWCG	4 cut(s)	53, 203, 215, 223
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 326
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	81, 178, 304, 309
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	4 cut(s)	266, 273, 316, 339
Lsp1109I	GCAGC	2 cut(s)	156, 159
MaeI	CTAG	2 cut(s)	282, 335
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	4 cut(s)	6, 117, 214, 290
MalI	GATC	4 cut(s)	83, 180, 306, 311
MboI	GATC	4 cut(s)	81, 178, 304, 309
MluCI	AATT	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	3 cut(s)	66, 72, 216
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	2 cut(s)	326, 331
MvaI	CCWGG	1 cut(s)	331
MvnI	CGCG	3 cut(s)	62, 142, 223
MwoI	GCNNNNNNNGC	2 cut(s)	59, 326
NciI	CCSGG	1 cut(s)	326
NdeII	GATC	4 cut(s)	81, 178, 304, 309
NlaIII	CATG	1 cut(s)	82
NmuCI	GTSAC	4 cut(s)	6, 117, 214, 290
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 224
PfeI	GAWTC	2 cut(s)	38, 107
PflFI	GACNNNGTC	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	146, 149
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	223
SatI	GCNGC	2 cut(s)	145, 148
Sau3AI	GATC	4 cut(s)	81, 178, 304, 309
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	326, 331
SetI	ASST	5 cut(s)	60, 119, 152, 283, 287
SinI	GGWCC	1 cut(s)	250
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	2 cut(s)	153, 223
SspMI	CTAG	2 cut(s)	282, 335
StyD4I	CCNGG	2 cut(s)	324, 329
TaaI	ACNGT	1 cut(s)	123
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	3 cut(s)	84, 227, 277
TaqII	GACCGA	1 cut(s)	238
TasI	AATT	1 cut(s)	265
TfiI	GAWTC	2 cut(s)	38, 107
TseFI	GTSAC	4 cut(s)	6, 117, 214, 290
TseI	GCWGC	2 cut(s)	144, 147
Tsp45I	GTSAC	4 cut(s)	6, 117, 214, 290
TspDTI	ATGAA	1 cut(s)	102
TspGWI	ACGGA	3 cut(s)	4, 55, 199
Tth111I	GACNNNGTC	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	1 cut(s)	265
XspI	CTAG	2 cut(s)	282, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.