Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024329.1

Orthogroup ID

OG0006617

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 849

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024329.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

gagagtttcgaggccgtcgccgtggctgttgggaggtgtgaggacgaatgcgaagcccggggccgcgctcgcggcggctgcggcggcttcgaggtcgatgccgacgccccacgccgcggcgatcaagtcgaggaggagcgccgggagcgggagtttccagaaagctgtggaggctgcggaattgggtgagagatcggagggagggtccaattttaacgaggatagcaatgcggttggttccgaaacgacgccgtcgaattcaaatgaagtagaggaggattttggtggtgcgttggggaggaaagatgaggttttggagagggaggtagagcaggtgagtcaggttgatgaagttagtgctggcaatgctggtgaagaattggatgagaattcaacaaatttagatgccagtgatgttagagataatgaattggatgagaatgttcgggtttcggaggaaggtccaccagaggaagaagatttagatgaaaatagtccttcttcgaaacatagagatgttgaggatgagcagcatcttcgtggtattgatgataatgatgaggttggtgataatgataatgataaagatggtgatgatcattttgatgatgatgatgatgcattgggaacttcaatcactcaacttgtggaggagagaatcgagcaactggagagcaggaggattagtaaaaaagcggaaaagaaatcaagaaagccacttgaaatcgccgaagagctggagaagaaacaagcttcaactgctttgggttgggaagagggtgctgctgctcagcctatgagacttgagggtgttcggagagggtccaccacgttgggatacttcaatgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0006810 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016050 GO:0016192 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0034058 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0097708 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

ANAPC4_WD40 Clathrin Vps8

Protein Analysis

283

Amino Acids

30.57

Weight (kDa)

4.39

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00800 AT4G00800
fragaria_vesca	FvH4_3g34060 FvH4_7g01070 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640
malus_domestica	MD07G1159400.v1.1
prunus_persica	Prupe.2G197500_v2.0.a1
pyrus_communis	pycom01g11250 pycom07g15600
rosa_chinensis	RchiOBHm_Chr1g0361071
rosa_laevigata	RLG00000027750
rosa_multiflora	Rmu_sc0003333.1_g000009 Rmu_sc0014603.1_g000002 Rmu_sc0024329.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295450
rosa_rugosa	Rorug01G0285300
rosa_samantha	Rh1AG296700 Rh1BG261000 Rh1CG278300 Rh1DG291000
rosa_wichuraiana	Rw1G026210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	323
AccBSI	CCGCTC	1 cut(s)	148
AccII	CGCG	3 cut(s)	66, 72, 117
AcsI	RAATTY	3 cut(s)	257, 389, 398
AcyI	GRCGYC	2 cut(s)	105, 249
AfiI	CCNNNNNNNGG	2 cut(s)	116, 148
AgsI	TTSAA	6 cut(s)	262, 394, 634, 723, 757, 845
AluBI	AGCT	3 cut(s)	165, 737, 753
AluI	AGCT	3 cut(s)	165, 737, 753
Alw26I	GTCTC	1 cut(s)	794
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	2 cut(s)	12, 61
ApeKI	GCWGC	5 cut(s)	78, 174, 530, 783, 786
ApoI	RAATTY	3 cut(s)	257, 389, 398
AspLEI	GCGC	2 cut(s)	68, 141
AspS9I	GGNCC	4 cut(s)	61, 205, 462, 823
AsuC2I	CCSGG	3 cut(s)	58, 59, 143
AsuHPI	GGTGA	5 cut(s)	198, 347, 384, 579, 603
AsuII	TTCGAA	1 cut(s)	504
AvaI	CYCGRG	1 cut(s)	57
AvaII	GGWCC	3 cut(s)	205, 462, 823
BbvI	GCAGC	5 cut(s)	65, 161, 542, 770, 773
BccI	CCATC	1 cut(s)	582
BceAI	ACGGC	2 cut(s)	5, 236
BcgI	CGANNNNNNTGC	4 cut(s)	80, 114, 519, 553
BciVI	GTATCC	1 cut(s)	831
BclI	TGATCA	1 cut(s)	596
BcnI	CCSGG	3 cut(s)	58, 59, 143
BcoDI	GTCTC	1 cut(s)	794
BfoI	RGCGCY	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	831
BlpI	GCTNAGC	1 cut(s)	790
Bme1390I	CCNGG	3 cut(s)	58, 59, 143
Bme18I	GGWCC	3 cut(s)	205, 462, 823
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	4 cut(s)	61, 205, 462, 823
BmiI	GGNNCC	4 cut(s)	62, 206, 239, 824
BmrFI	CCNGG	3 cut(s)	58, 59, 143
BmsI	GCATC	4 cut(s)	88, 395, 542, 608
BpmI	CTGGAG	2 cut(s)	690, 759
Bpu1102I	GCTNAGC	1 cut(s)	790
Bpu14I	TTCGAA	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	825
BpuMI	CCSGG	3 cut(s)	58, 59, 143
BsaHI	GRCGYC	2 cut(s)	105, 249
BsaJI	CCNNGG	4 cut(s)	21, 57, 58, 115
BsaXI	ACNNNNNCTCC	6 cut(s)	137, 167, 189, 219, 671, 701
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 148
Bse1I	ACTGG	2 cut(s)	409, 673
Bse3DI	GCAATG	2 cut(s)	233, 371
BseDI	CCNNGG	4 cut(s)	21, 57, 58, 115
BseGI	GGATG	3 cut(s)	389, 440, 530
BseLI	CCNNNNNNNGG	2 cut(s)	116, 148
BseMI	GCAATG	2 cut(s)	233, 371
BseMII	CTCAG	1 cut(s)	804
BseNI	ACTGG	2 cut(s)	409, 673
BseRI	GAGGAG	4 cut(s)	146, 149, 288, 666
BseXI	GCAGC	5 cut(s)	65, 161, 542, 770, 773
Bsh1236I	CGCG	3 cut(s)	66, 72, 117
BshFI	GGCC	2 cut(s)	14, 63
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	58, 142
BslI	CCNNNNNNNGG	2 cut(s)	116, 148
BsmAI	GTCTC	1 cut(s)	794
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	14, 63
BsoBI	CYCGRG	1 cut(s)	57
Bsp119I	TTCGAA	1 cut(s)	504
Bsp143I	GATC	3 cut(s)	121, 192, 596
Bsp1720I	GCTNAGC	1 cut(s)	790
BspANI	GGCC	2 cut(s)	14, 63
BspCNI	CTCAG	1 cut(s)	803
BspFNI	CGCG	3 cut(s)	66, 72, 117
BspLI	GGNNCC	4 cut(s)	62, 206, 239, 824
BspMI	ACCTGC	1 cut(s)	323
BspQI	GCTCTTC	1 cut(s)	727
BspT104I	TTCGAA	1 cut(s)	504
BsrBI	CCGCTC	1 cut(s)	148
BsrDI	GCAATG	2 cut(s)	233, 371
BsrI	ACTGG	2 cut(s)	409, 673
BssECI	CCNNGG	4 cut(s)	21, 57, 58, 115
BssMI	GATC	3 cut(s)	121, 192, 596
BssNI	GRCGYC	2 cut(s)	105, 249
Bst6I	CTCTTC	2 cut(s)	727, 769
BstACI	GRCGYC	2 cut(s)	105, 249
BstBI	TTCGAA	1 cut(s)	504
BstC8I	GCNNGC	2 cut(s)	70, 362
BstDEI	CTNAG	1 cut(s)	790
BstDSI	CCRYGG	2 cut(s)	21, 115
BstF5I	GGATG	3 cut(s)	389, 440, 530
BstFNI	CGCG	3 cut(s)	66, 72, 117
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	2 cut(s)	68, 141
BstKTI	GATC	3 cut(s)	124, 195, 599
BstMAI	GTCTC	1 cut(s)	794
BstMBI	GATC	3 cut(s)	121, 192, 596
BstMWI	GCNNNNNNNGC	9 cut(s)	69, 72, 78, 81, 84, 145, 171, 366, 759
BstSCI	CCNGG	3 cut(s)	56, 57, 141
BstUI	CGCG	3 cut(s)	66, 72, 117
BstV1I	GCAGC	5 cut(s)	65, 161, 542, 770, 773
BstXI	CCANNNNNNTGG	1 cut(s)	833
BsuI	GTATCC	1 cut(s)	831
BsuRI	GGCC	2 cut(s)	14, 63
BtgI	CCRYGG	2 cut(s)	21, 115
BtsCI	GGATG	3 cut(s)	389, 440, 530
BtsIMutI	CAGTG	1 cut(s)	416
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	2 cut(s)	70, 362
CfoI	GCGC	2 cut(s)	68, 141
Cfr13I	GGNCC	4 cut(s)	61, 205, 462, 823
Cfr42I	CCGCGG	1 cut(s)	118
Cfr9I	CCCGGG	1 cut(s)	57
CseI	GACGC	2 cut(s)	113, 257
DdeI	CTNAG	1 cut(s)	790
DpnI	GATC	3 cut(s)	123, 194, 598
DpnII	GATC	3 cut(s)	121, 192, 596
Eam1104I	CTCTTC	2 cut(s)	727, 769
EarI	CTCTTC	2 cut(s)	727, 769
Eco47I	GGWCC	3 cut(s)	205, 462, 823
Eco88I	CYCGRG	1 cut(s)	57
EcoRI	GAATTC	2 cut(s)	257, 389
EcoT22I	ATGCAT	1 cut(s)	623
FaiI	YATR	2 cut(s)	511, 798
FauI	CCCGC	1 cut(s)	141
FbaI	TGATCA	1 cut(s)	596
FokI	GGATG	3 cut(s)	396, 447, 537
GlaI	GCGC	2 cut(s)	67, 140
GsuI	CTGGAG	2 cut(s)	690, 759
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	14, 63
HapII	CCGG	2 cut(s)	58, 142
HgaI	GACGC	2 cut(s)	113, 257
HhaI	GCGC	2 cut(s)	68, 141
Hin1I	GRCGYC	2 cut(s)	105, 249
Hin6I	GCGC	2 cut(s)	66, 139
HinP1I	GCGC	2 cut(s)	66, 139
HindIII	AAGCTT	1 cut(s)	751
HinfI	GANTC	2 cut(s)	338, 658
HpaII	CCGG	2 cut(s)	58, 142
HphI	GGTGA	5 cut(s)	198, 347, 384, 579, 603
Hpy166II	GTNNAC	2 cut(s)	465, 826
Hpy188I	TCNGA	4 cut(s)	197, 242, 455, 817
Hpy188III	TCNNGA	2 cut(s)	158, 709
Hpy8I	GTNNAC	2 cut(s)	465, 826
Hpy99I	CGWCG	4 cut(s)	20, 107, 251, 257
HpyAV	CCTTC	2 cut(s)	453, 508
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	1 cut(s)	621
HpyF10VI	GCNNNNNNNGC	9 cut(s)	69, 72, 78, 81, 84, 145, 171, 366, 759
HpyF3I	CTNAG	1 cut(s)	790
HpySE526I	ACGT	1 cut(s)	831
Hsp92I	GRCGYC	2 cut(s)	105, 249
HspAI	GCGC	2 cut(s)	66, 139
Ksp22I	TGATCA	1 cut(s)	596
KspI	CCGCGG	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	121, 192, 596
LguI	GCTCTTC	1 cut(s)	727
LmnI	GCTCC	2 cut(s)	136, 145
Lsp1109I	GCAGC	5 cut(s)	65, 161, 542, 770, 773
LweI	GCATC	4 cut(s)	88, 395, 542, 608
MaeII	ACGT	1 cut(s)	831
MalI	GATC	3 cut(s)	123, 194, 598
MbiI	CCGCTC	1 cut(s)	148
MboI	GATC	3 cut(s)	121, 192, 596
MboII	GAAGA	8 cut(s)	387, 486, 489, 493, 528, 744, 755, 786
MluCI	AATT	7 cut(s)	180, 209, 257, 378, 389, 398, 429
MlyI	GAGTC	1 cut(s)	347
Mph1103I	ATGCAT	1 cut(s)	623
MseI	TTAA	1 cut(s)	214
MslI	CAYNNNNRTG	3 cut(s)	514, 538, 604
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	2 cut(s)	58, 142
MspR9I	CCNGG	3 cut(s)	58, 59, 143
Mva1269I	GAATGC	1 cut(s)	53
MvnI	CGCG	3 cut(s)	66, 72, 117
MwoI	GCNNNNNNNGC	9 cut(s)	69, 72, 78, 81, 84, 145, 171, 366, 759
NciI	CCSGG	3 cut(s)	58, 59, 143
NdeII	GATC	3 cut(s)	121, 192, 596
NlaIV	GGNNCC	4 cut(s)	62, 206, 239, 824
NsiI	ATGCAT	1 cut(s)	623
NspV	TTCGAA	1 cut(s)	504
PaqCI	CACCTGC	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	727
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	658
PflFI	GACNNNGTC	1 cut(s)	251
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PspN4I	GGNNCC	4 cut(s)	62, 206, 239, 824
PspPI	GGNCC	4 cut(s)	61, 205, 462, 823
PsyI	GACNNNGTC	1 cut(s)	251
RseI	CAYNNNNRTG	3 cut(s)	514, 538, 604
SacII	CCGCGG	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	727
SaqAI	TTAA	1 cut(s)	214
Sau3AI	GATC	3 cut(s)	121, 192, 596
Sau96I	GGNCC	4 cut(s)	61, 205, 462, 823
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	3 cut(s)	58, 59, 143
SfaNI	GCATC	4 cut(s)	88, 395, 542, 608
Sfr303I	CCGCGG	1 cut(s)	118
SfuI	TTCGAA	1 cut(s)	504
SgrBI	CCGCGG	1 cut(s)	118
SinI	GGWCC	3 cut(s)	205, 462, 823
SmaI	CCCGGG	1 cut(s)	59
SmiMI	CAYNNNNRTG	3 cut(s)	514, 538, 604
SmlI	CTYRAG	1 cut(s)	804
SmoI	CTYRAG	1 cut(s)	804
Sse9I	AATT	7 cut(s)	180, 209, 257, 378, 389, 398, 429
StyD4I	CCNGG	3 cut(s)	56, 57, 141
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	7 cut(s)	9, 90, 96, 129, 255, 504, 661
TasI	AATT	7 cut(s)	180, 209, 257, 378, 389, 398, 429
TauI	GCSGC	7 cut(s)	66, 75, 78, 84, 87, 117, 120
TfiI	GAWTC	1 cut(s)	658
Tru1I	TTAA	1 cut(s)	214
Tru9I	TTAA	1 cut(s)	214
TscAI	CASTG	1 cut(s)	416
TseI	GCWGC	5 cut(s)	78, 174, 530, 783, 786
TspDTI	ATGAA	4 cut(s)	280, 364, 442, 502
TspMI	CCCGGG	1 cut(s)	57
TspRI	CASTG	1 cut(s)	416
Tth111I	GACNNNGTC	1 cut(s)	251
VpaK11BI	GGWCC	3 cut(s)	205, 462, 823
XapI	RAATTY	3 cut(s)	257, 389, 398
XmaI	CCCGGG	1 cut(s)	57
Zsp2I	ATGCAT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.