Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006617

Physical Location & Seq

Genomic Coordinates Forward (+)

12237176 .. 12237682

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGACCAAGAAGCTCACTCACTTCGAACTGCAACTCGCCATGGAACTCGACCTCGACTCGTTCCTCAACTCACACGTTTCCCTCTCCGACGAAGACGACGACGTCCCCCACCGCACGATCGACGAAATCCTCAACGACACCGATTCGTCCGCCTCATCTTCCCCGCCCTCCTCCACTATCCACCGCCTCAATTCCGACACCAAACCACCGGAACCGCCAAAATACGCCGTATTAGTCCACGTTGTTAAACCCGAGGATGAAAGGGCGGTCCGAATGAGGCCCTATTTGTACAGTCCGGTCAAGTACGGGGATTTAGCGGACGATCCGGCCGGGAGGGTTTCCAAGCCGTCTCCATGGTTTCTCGGAGGCATGAGAACAAATGCGAAGCCCGGGGCGGCCCTGGCTGCTGCTGCGGCGGCCTCGAGGTTGATGCCGACTCCGCACGCCACCGCCGAGGAGCGCCGGGAGTGGAGTTATCCAATCAATTTTCTTTATAAATGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0006810 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016050 GO:0016192 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0034058 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0097708 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

ANAPC4_WD40 Clathrin Vps8

Protein Analysis

169

Amino Acids

18.71

Weight (kDa)

5.65

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00800 AT4G00800
fragaria_vesca	FvH4_3g34060 FvH4_7g01070 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640
malus_domestica	MD07G1159400.v1.1
prunus_persica	Prupe.2G197500_v2.0.a1
pyrus_communis	pycom01g11250 pycom07g15600
rosa_chinensis	RchiOBHm_Chr1g0361071
rosa_laevigata	RLG00000027750
rosa_multiflora	Rmu_sc0003333.1_g000009 Rmu_sc0014603.1_g000002 Rmu_sc0024329.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295450
rosa_rugosa	Rorug01G0285300
rosa_samantha	Rh1AG296700 Rh1BG261000 Rh1CG278300 Rh1DG291000
rosa_wichuraiana	Rw1G026210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AasI	GACNNNNNNGTC	1 cut(s)	101
AatII	GACGTC	1 cut(s)	105
AbsI	CCTCGAGG	1 cut(s)	421
AclWI	GGATC	1 cut(s)	317
AcoI	YGGCCR	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	2 cut(s)	290, 305
AflIII	ACRYGT	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	317
Ama87I	CYCGRG	3 cut(s)	251, 389, 421
AoxI	GGCC	4 cut(s)	278, 327, 396, 417
ApeKI	GCWGC	3 cut(s)	404, 407, 410
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	3 cut(s)	268, 279, 397
AsuC2I	CCSGG	4 cut(s)	331, 390, 391, 464
AsuII	TTCGAA	1 cut(s)	24
AvaI	CYCGRG	3 cut(s)	251, 389, 421
AvaII	GGWCC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	3 cut(s)	391, 394, 397
BceAI	ACGGC	2 cut(s)	212, 331
BcgI	CGANNNNNNTGC	2 cut(s)	412, 446
BciT130I	CCWGG	1 cut(s)	401
BcnI	CCSGG	4 cut(s)	331, 390, 391, 464
BcoDI	GTCTC	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	463
BisI	GCNGC	6 cut(s)	396, 405, 408, 411, 414, 417
BlsI	GCNGC	6 cut(s)	397, 406, 409, 412, 415, 418
Bme1390I	CCNGG	5 cut(s)	331, 390, 391, 401, 464
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	3 cut(s)	251, 389, 421
BmgT120I	GGNCC	3 cut(s)	268, 279, 397
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	5 cut(s)	331, 390, 391, 401, 464
BmsI	GCATC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	24
BpuMI	CCSGG	4 cut(s)	331, 390, 391, 464
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	7 cut(s)	39, 252, 353, 389, 390, 399, 453
BsaWI	WCCGGW	2 cut(s)	208, 295
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	7 cut(s)	39, 252, 353, 389, 390, 399, 453
BseGI	GGATG	1 cut(s)	262
BseRI	GAGGAG	2 cut(s)	160, 470
BseX3I	CGGCCG	1 cut(s)	327
BseXI	GCAGC	3 cut(s)	391, 394, 397
Bsh1285I	CGRYCG	2 cut(s)	120, 330
BshFI	GGCC	4 cut(s)	280, 329, 398, 419
BsiEI	CGRYCG	2 cut(s)	120, 330
BsiHKCI	CYCGRG	3 cut(s)	251, 389, 421
BsiSI	CCGG	6 cut(s)	209, 296, 326, 330, 390, 463
BslFI	GGGAC	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	354
BsmBI	CGTCTC	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	4 cut(s)	280, 329, 398, 419
BsoBI	CYCGRG	3 cut(s)	251, 389, 421
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	117, 322
Bsp19I	CCATGG	2 cut(s)	39, 353
BspANI	GGCC	4 cut(s)	280, 329, 398, 419
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	317
BspT104I	TTCGAA	1 cut(s)	24
BsrGI	TGTACA	1 cut(s)	288
BssECI	CCNNGG	7 cut(s)	39, 252, 353, 389, 390, 399, 453
BssMI	GATC	2 cut(s)	117, 322
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	2 cut(s)	39, 353
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	288
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	444
BstDSI	CCRYGG	2 cut(s)	39, 353
BstF5I	GGATG	1 cut(s)	262
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	2 cut(s)	120, 325
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	2 cut(s)	117, 322
BstMCI	CGRYCG	2 cut(s)	120, 330
BstMWI	GCNNNNNNNGC	6 cut(s)	401, 404, 410, 413, 416, 439
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	5 cut(s)	329, 388, 389, 399, 462
BstV1I	GCAGC	3 cut(s)	391, 394, 397
BstV2I	GAAGAC	1 cut(s)	99
BstZI	CGGCCG	1 cut(s)	327
BsuRI	GGCC	4 cut(s)	280, 329, 398, 419
BtgI	CCRYGG	2 cut(s)	39, 353
BtsCI	GGATG	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	444
CfoI	GCGC	1 cut(s)	462
Cfr13I	GGNCC	3 cut(s)	268, 279, 397
Cfr9I	CCCGGG	1 cut(s)	389
CpoI	CGGWCCG	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	289, 304
CspI	CGGWCCG	1 cut(s)	268
CviAII	CATG	3 cut(s)	40, 354, 370
CviJI	RGCY	8 cut(s)	13, 280, 329, 346, 388, 398, 404, 419
CviKI_1	RGCY	8 cut(s)	13, 280, 329, 346, 388, 398, 404, 419
CviQI	GTAC	2 cut(s)	289, 304
DpnI	GATC	2 cut(s)	119, 324
DpnII	GATC	2 cut(s)	117, 322
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	327
EagI	CGGCCG	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	139
EclXI	CGGCCG	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	39, 353
Eco47I	GGWCC	1 cut(s)	268
Eco52I	CGGCCG	1 cut(s)	327
Eco88I	CYCGRG	3 cut(s)	251, 389, 421
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	2 cut(s)	39, 353
ErhI	CCWWGG	2 cut(s)	39, 353
Esp3I	CGTCTC	1 cut(s)	354
FaeI	CATG	3 cut(s)	43, 357, 373
FaiI	YATR	4 cut(s)	41, 355, 371, 495
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	3 cut(s)	39, 353, 369
FauI	CCCGC	1 cut(s)	171
Fnu4HI	GCNGC	6 cut(s)	396, 405, 408, 411, 414, 417
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	6 cut(s)	396, 405, 408, 411, 414, 417
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	6 cut(s)	396, 405, 408, 411, 414, 417
HaeII	RGCGCY	1 cut(s)	463
HaeIII	GGCC	4 cut(s)	280, 329, 398, 419
HapII	CCGG	6 cut(s)	209, 296, 326, 330, 390, 463
HhaI	GCGC	1 cut(s)	462
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	43, 357, 373
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HinfI	GANTC	3 cut(s)	56, 143, 436
HpaII	CCGG	6 cut(s)	209, 296, 326, 330, 390, 463
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	4 cut(s)	88, 196, 272, 365
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	4 cut(s)	92, 101, 104, 125
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	3 cut(s)	75, 102, 240
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	6 cut(s)	401, 404, 410, 413, 416, 439
HpySE526I	ACGT	3 cut(s)	75, 102, 240
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	43, 357, 373
HspAI	GCGC	1 cut(s)	460
Kzo9I	GATC	2 cut(s)	117, 322
LmnI	GCTCC	1 cut(s)	457
LpnPI	CCDG	8 cut(s)	222, 309, 339, 343, 386, 403, 413, 476
Lsp1109I	GCAGC	3 cut(s)	391, 394, 397
LweI	GCATC	1 cut(s)	420
MaeII	ACGT	3 cut(s)	75, 102, 240
MalI	GATC	2 cut(s)	119, 324
MboI	GATC	2 cut(s)	117, 322
MboII	GAAGA	2 cut(s)	104, 150
MluCI	AATT	2 cut(s)	190, 484
MlyI	GAGTC	2 cut(s)	50, 430
MmeI	TCCRAC	2 cut(s)	111, 219
MseI	TTAA	1 cut(s)	246
MspI	CCGG	6 cut(s)	209, 296, 326, 330, 390, 463
MspR9I	CCNGG	5 cut(s)	331, 390, 391, 401, 464
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	6 cut(s)	401, 404, 410, 413, 416, 439
NciI	CCSGG	4 cut(s)	331, 390, 391, 464
NcoI	CCATGG	2 cut(s)	39, 353
NdeII	GATC	2 cut(s)	117, 322
NlaIII	CATG	3 cut(s)	43, 357, 373
NlaIV	GGNNCC	1 cut(s)	213
NmeAIII	GCCGAG	1 cut(s)	478
NspV	TTCGAA	1 cut(s)	24
PaeR7I	CTCGAG	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 450
PfeI	GAWTC	1 cut(s)	143
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	6 cut(s)	397, 406, 409, 412, 415, 418
Ple19I	CGATCG	1 cut(s)	120
PleI	GAGTC	2 cut(s)	50, 430
PpsI	GAGTC	2 cut(s)	50, 430
PsiI	TTATAA	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	3 cut(s)	268, 279, 397
PspXI	VCTCGAGB	1 cut(s)	421
PsyI	GACNNNGTC	1 cut(s)	101
PvuI	CGATCG	1 cut(s)	120
RsaI	GTAC	2 cut(s)	290, 305
RsaNI	GTAC	2 cut(s)	289, 304
Rsr2I	CGGWCCG	1 cut(s)	268
RsrII	CGGWCCG	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	6 cut(s)	396, 405, 408, 411, 414, 417
Sau3AI	GATC	2 cut(s)	117, 322
Sau96I	GGNCC	3 cut(s)	268, 279, 397
SchI	GAGTC	2 cut(s)	50, 430
ScrFI	CCNGG	5 cut(s)	331, 390, 391, 401, 464
SetI	ASST	6 cut(s)	15, 54, 78, 105, 243, 428
SfaNI	GCATC	1 cut(s)	420
Sfr274I	CTCGAG	1 cut(s)	421
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	1 cut(s)	268
SlaI	CTCGAG	1 cut(s)	421
SmaI	CCCGGG	1 cut(s)	391
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	2 cut(s)	190, 484
StyD4I	CCNGG	5 cut(s)	329, 388, 389, 399, 462
StyI	CCWWGG	2 cut(s)	39, 353
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	3 cut(s)	78, 105, 243
TaqI	TCGA	5 cut(s)	24, 48, 54, 120, 422
TasI	AATT	2 cut(s)	190, 484
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	3 cut(s)	398, 416, 419
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseI	GCWGC	3 cut(s)	404, 407, 410
TspDTI	ATGAA	1 cut(s)	273
TspMI	CCCGGG	1 cut(s)	389
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	268
XhoI	CTCGAG	1 cut(s)	421
XmaI	CCCGGG	1 cut(s)	389
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.