Rmu_sc0014603.1_g000002

Vacuolar protein sorting-associated protein 8 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014603.1
Physical Location & Seq
Forward (+)
1331 .. 2559
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014603.1_g000002.1.cds

Sequence Viewer

Length: 1229 bp
atgaccaagaagctcacacaatcggaaccacaactcgccatggagctcgaccttgactcgttcctcaactcacacctctcctcctcctcctccgactccgaccccgacctcacctccgtcccgcgccgtacgatcgacgaaatcctcaacgacaccgattcatccaggtcagcatccccctcctcttccccgcgtagttcgaccttatctcagttcctcgcgtccgatcccaaaccgccacagagcgacgccgtttcggtcgccagcggcagaaccgagggagcggggaggttgagtcaattggaggagaaggcggtccggccgggtttgaatttgtacagccgggctaggtccggggatttcccggacgattcggtcgggagagtttcgaggccgtcgccgtggctgttgggaggtgtgaggacgaatgcgaagcccggggccgcgctcgcggcggctgccgcggcttcgaggtcgatgccgacgccccacgccgcggcgatcaagtcgaggaggagcgccgggagcgggagtttccagaaagctgtggaggctacggaattgggcgagagatcggagggagggtccaattttaacggggatagcaatgcggttggttccgaaacgacgccgtcgaattcgaatgaagtagaggaggattttggtggtgcgttggggaggaaagatgaggttttggagagggaggtagagcaggtgagtcaggttgatgaagttagtgctggcaatgctggtgaagaattggatgagaattcaacaaatttagatgccagtgatgttagagataatgaattggatgagaatgttcgggtttcggaggaaggtccaccagaggaagaagatttagatgaaaatagtccttctttgaaacatagagatgttgaggatgagcagcatcttggtggtattgatgataatgatgaggttggtgataatgataatgataaagatggtgatgatcattttgatgatgatgatgatgcattgggaacttcaatcactcaacttgtggaggagagaatcgagcaactggagaacaggaggattagtaaaaaagcggaaaagaaatcaagaaagccacttgaaatcgctgaagagctggagaagaaacaagcttcaactgctttggattgggaagagggtgctgctgctcagcctatgagacttgagggtgttcggagagggtccaccacgttgggatacttcaatgt

Protein Analysis

410

Amino Acids

44.05

Weight (kDa)

4.41

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 703
AasI GACNNNNNNGTC 1 cut(s) 374
Acc36I ACCTGC 1 cut(s) 703
AccBSI CCGCTC 2 cut(s) 284, 528
AccII CGCG 7 cut(s) 124, 193, 221, 446, 452, 464, 497
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 320
AcsI RAATTY 4 cut(s) 331, 637, 769, 778
AcuI CTGAAG 1 cut(s) 1131
AcyI GRCGYC 3 cut(s) 249, 485, 629
AfaI GTAC 2 cut(s) 130, 338
AfiI CCNNNNNNNGG 2 cut(s) 496, 528
AgsI TTSAA 7 cut(s) 331, 774, 886, 1014, 1103, 1137, 1225
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 5 cut(s) 13, 46, 545, 1117, 1133
AluI AGCT 5 cut(s) 13, 46, 545, 1117, 1133
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 1174
AlwI GGATC 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 3 cut(s) 320, 392, 441
ApeKI GCWGC 4 cut(s) 458, 910, 1163, 1166
ApoI RAATTY 4 cut(s) 331, 637, 769, 778
AspLEI GCGC 3 cut(s) 126, 448, 521
AspS9I GGNCC 6 cut(s) 316, 351, 441, 585, 842, 1203
AsuC2I CCSGG 7 cut(s) 324, 344, 355, 365, 438, 439, 523
AsuHPI GGTGA 5 cut(s) 103, 727, 764, 959, 983
AsuII TTCGAA 1 cut(s) 641
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 5 cut(s) 316, 351, 585, 842, 1203
BanII GRGCYC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 4 cut(s) 445, 922, 1150, 1153
BccI CCATC 1 cut(s) 962
BceAI ACGGC 5 cut(s) 111, 236, 379, 385, 616
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 1 cut(s) 166
BciVI GTATCC 1 cut(s) 1211
BclI TGATCA 1 cut(s) 976
BcnI CCSGG 7 cut(s) 324, 344, 355, 365, 438, 439, 523
BcoDI GTCTC 1 cut(s) 1174
BfaI CTAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 522
BfuAI ACCTGC 1 cut(s) 703
BfuI GTATCC 1 cut(s) 1211
BlpI GCTNAGC 1 cut(s) 1170
Bme1390I CCNGG 8 cut(s) 166, 324, 344, 355, 365, 438, 439, 523
Bme18I GGWCC 5 cut(s) 316, 351, 585, 842, 1203
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 6 cut(s) 316, 351, 441, 585, 842, 1203
BmiI GGNNCC 5 cut(s) 27, 442, 586, 619, 1204
BmrFI CCNGG 8 cut(s) 166, 324, 344, 355, 365, 438, 439, 523
BmsI GCATC 5 cut(s) 182, 468, 775, 922, 988
BpmI CTGGAG 2 cut(s) 1070, 1139
Bpu1102I GCTNAGC 1 cut(s) 1170
Bpu14I TTCGAA 1 cut(s) 641
BpuEI CTTGAG 1 cut(s) 1205
BpuMI CCSGG 7 cut(s) 324, 344, 355, 365, 438, 439, 523
BsaHI GRCGYC 3 cut(s) 249, 485, 629
BsaJI CCNNGG 8 cut(s) 39, 276, 354, 401, 437, 438, 462, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 496, 528
Bse1I ACTGG 2 cut(s) 789, 1053
Bse3DI GCAATG 2 cut(s) 613, 751
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 8 cut(s) 39, 276, 354, 401, 437, 438, 462, 495
BseGI GGATG 5 cut(s) 161, 173, 769, 820, 910
BseLI CCNNNNNNNGG 2 cut(s) 496, 528
BseMI GCAATG 2 cut(s) 613, 751
BseMII CTCAG 2 cut(s) 224, 1184
BseNI ACTGG 2 cut(s) 789, 1053
BseX3I CGGCCG 1 cut(s) 320
BseXI GCAGC 4 cut(s) 445, 922, 1150, 1153
Bsh1236I CGCG 7 cut(s) 124, 193, 221, 446, 452, 464, 497
Bsh1285I CGRYCG 4 cut(s) 135, 261, 323, 378
BshFI GGCC 3 cut(s) 322, 394, 443
BsiEI CGRYCG 4 cut(s) 135, 261, 323, 378
BsiHKAI GWGCWC 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 7 cut(s) 319, 323, 343, 354, 365, 438, 522
BsiWI CGTACG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 496, 528
BsmAI GTCTC 1 cut(s) 1174
BsmFI GGGAC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 3 cut(s) 322, 394, 443
BsoBI CYCGRG 1 cut(s) 437
Bsp119I TTCGAA 1 cut(s) 641
Bsp1286I GDGCHC 1 cut(s) 48
Bsp1407I TGTACA 1 cut(s) 336
Bsp143I GATC 5 cut(s) 132, 226, 501, 572, 976
Bsp1720I GCTNAGC 1 cut(s) 1170
Bsp19I CCATGG 1 cut(s) 39
BspANI GGCC 3 cut(s) 322, 394, 443
BspCNI CTCAG 2 cut(s) 223, 1183
BspFNI CGCG 7 cut(s) 124, 193, 221, 446, 452, 464, 497
BspLI GGNNCC 5 cut(s) 27, 442, 586, 619, 1204
BspMI ACCTGC 1 cut(s) 703
BspPI GGATC 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 1107
BspT104I TTCGAA 1 cut(s) 641
BsrBI CCGCTC 2 cut(s) 284, 528
BsrDI GCAATG 2 cut(s) 613, 751
BsrGI TGTACA 1 cut(s) 336
BsrI ACTGG 2 cut(s) 789, 1053
BssECI CCNNGG 8 cut(s) 39, 276, 354, 401, 437, 438, 462, 495
BssMI GATC 5 cut(s) 132, 226, 501, 572, 976
BssNI GRCGYC 3 cut(s) 249, 485, 629
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 166
Bst6I CTCTTC 3 cut(s) 190, 1107, 1149
BstACI GRCGYC 3 cut(s) 249, 485, 629
BstAUI TGTACA 1 cut(s) 336
BstBI TTCGAA 1 cut(s) 641
BstC8I GCNNGC 3 cut(s) 265, 450, 742
BstDEI CTNAG 2 cut(s) 210, 1170
BstDSI CCRYGG 4 cut(s) 39, 401, 462, 495
BstF5I GGATG 5 cut(s) 161, 173, 769, 820, 910
BstFNI CGCG 7 cut(s) 124, 193, 221, 446, 452, 464, 497
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 3 cut(s) 126, 448, 521
BstKTI GATC 5 cut(s) 135, 229, 504, 575, 979
BstMAI GTCTC 1 cut(s) 1174
BstMBI GATC 5 cut(s) 132, 226, 501, 572, 976
BstMCI CGRYCG 4 cut(s) 135, 261, 323, 378
BstMWI GCNNNNNNNGC 9 cut(s) 449, 452, 458, 461, 464, 525, 551, 746, 1139
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 8 cut(s) 164, 322, 342, 353, 363, 436, 437, 521
BstUI CGCG 7 cut(s) 124, 193, 221, 446, 452, 464, 497
BstV1I GCAGC 4 cut(s) 445, 922, 1150, 1153
BstXI CCANNNNNNTGG 1 cut(s) 1213
BstZI CGGCCG 1 cut(s) 320
BsuI GTATCC 1 cut(s) 1211
BsuRI GGCC 3 cut(s) 322, 394, 443
BtgI CCRYGG 4 cut(s) 39, 401, 462, 495
BtsCI GGATG 5 cut(s) 161, 173, 769, 820, 910
BtsIMutI CAGTG 1 cut(s) 796
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 3 cut(s) 265, 450, 742
CfoI GCGC 3 cut(s) 126, 448, 521
Cfr13I GGNCC 6 cut(s) 316, 351, 441, 585, 842, 1203
Cfr42I CCGCGG 2 cut(s) 465, 498
Cfr9I CCCGGG 1 cut(s) 437
CpoI CGGWCCG 1 cut(s) 316
CseI GACGC 4 cut(s) 210, 257, 493, 637
Csp6I GTAC 2 cut(s) 129, 337
CspI CGGWCCG 1 cut(s) 316
CviAII CATG 1 cut(s) 40
CviQI GTAC 2 cut(s) 129, 337
DdeI CTNAG 2 cut(s) 210, 1170
DpnI GATC 5 cut(s) 134, 228, 503, 574, 978
DpnII GATC 5 cut(s) 132, 226, 501, 572, 976
DrdI GACNNNNNNGTC 1 cut(s) 374
DseDI GACNNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 1 cut(s) 320
EagI CGGCCG 1 cut(s) 320
Eam1104I CTCTTC 3 cut(s) 190, 1107, 1149
EarI CTCTTC 3 cut(s) 190, 1107, 1149
Ecl136II GAGCTC 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 5 cut(s) 316, 351, 585, 842, 1203
Eco52I CGGCCG 1 cut(s) 320
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 1131
Eco88I CYCGRG 1 cut(s) 437
EcoICRI GAGCTC 1 cut(s) 46
EcoRI GAATTC 2 cut(s) 637, 769
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 1003
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 43
FaiI YATR 3 cut(s) 41, 891, 1178
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 39
FauI CCCGC 4 cut(s) 129, 198, 277, 521
FbaI TGATCA 1 cut(s) 976
FokI GGATG 5 cut(s) 148, 160, 776, 827, 917
FriOI GRGCYC 1 cut(s) 48
FspBI CTAG 1 cut(s) 348
GlaI GCGC 3 cut(s) 125, 447, 520
GsuI CTGGAG 2 cut(s) 1070, 1139
HaeII RGCGCY 1 cut(s) 522
HaeIII GGCC 3 cut(s) 322, 394, 443
HapII CCGG 7 cut(s) 319, 323, 343, 354, 365, 438, 522
HgaI GACGC 4 cut(s) 210, 257, 493, 637
HhaI GCGC 3 cut(s) 126, 448, 521
Hin1I GRCGYC 3 cut(s) 249, 485, 629
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 3 cut(s) 124, 446, 519
HinP1I GCGC 3 cut(s) 124, 446, 519
HindIII AAGCTT 1 cut(s) 1131
HinfI GANTC 7 cut(s) 56, 95, 158, 295, 371, 718, 1038
HpaII CCGG 7 cut(s) 319, 323, 343, 354, 365, 438, 522
HphI GGTGA 5 cut(s) 103, 727, 764, 959, 983
Hpy166II GTNNAC 2 cut(s) 845, 1206
Hpy188I TCNGA 8 cut(s) 25, 94, 100, 226, 577, 622, 835, 1197
Hpy188III TCNNGA 3 cut(s) 379, 538, 1089
Hpy8I GTNNAC 2 cut(s) 845, 1206
Hpy99I CGWCG 6 cut(s) 140, 251, 400, 487, 631, 637
HpyAV CCTTC 3 cut(s) 304, 833, 888
HpyCH4IV ACGT 1 cut(s) 1211
HpyCH4V TGCA 1 cut(s) 1001
HpyF10VI GCNNNNNNNGC 9 cut(s) 449, 452, 458, 461, 464, 525, 551, 746, 1139
HpyF3I CTNAG 2 cut(s) 210, 1170
HpySE526I ACGT 1 cut(s) 1211
Hsp92I GRCGYC 3 cut(s) 249, 485, 629
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 3 cut(s) 124, 446, 519
Ksp22I TGATCA 1 cut(s) 976
KspI CCGCGG 2 cut(s) 465, 498
Kzo9I GATC 5 cut(s) 132, 226, 501, 572, 976
LguI GCTCTTC 1 cut(s) 1107
LmnI GCTCC 4 cut(s) 43, 281, 516, 525
Lsp1109I GCAGC 4 cut(s) 445, 922, 1150, 1153
LweI GCATC 5 cut(s) 182, 468, 775, 922, 988
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 1211
MalI GATC 5 cut(s) 134, 228, 503, 574, 978
MbiI CCGCTC 2 cut(s) 284, 528
MboI GATC 5 cut(s) 132, 226, 501, 572, 976
MboII GAAGA 7 cut(s) 177, 767, 866, 869, 1124, 1135, 1166
MfeI CAATTG 1 cut(s) 299
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 9 cut(s) 299, 331, 560, 589, 637, 758, 769, 778, 809
MlyI GAGTC 4 cut(s) 50, 89, 304, 727
MmeI TCCRAC 2 cut(s) 117, 123
Mph1103I ATGCAT 1 cut(s) 1003
MseI TTAA 1 cut(s) 594
MslI CAYNNNNRTG 3 cut(s) 894, 918, 984
MspA1I CMGCKG 3 cut(s) 267, 464, 497
MspI CCGG 7 cut(s) 319, 323, 343, 354, 365, 438, 522
MspR9I CCNGG 8 cut(s) 166, 324, 344, 355, 365, 438, 439, 523
MunI CAATTG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 7 cut(s) 124, 193, 221, 446, 452, 464, 497
MwoI GCNNNNNNNGC 9 cut(s) 449, 452, 458, 461, 464, 525, 551, 746, 1139
NciI CCSGG 7 cut(s) 324, 344, 355, 365, 438, 439, 523
NcoI CCATGG 1 cut(s) 39
NdeII GATC 5 cut(s) 132, 226, 501, 572, 976
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 5 cut(s) 27, 442, 586, 619, 1204
NsiI ATGCAT 1 cut(s) 1003
NspV TTCGAA 1 cut(s) 641
PaqCI CACCTGC 1 cut(s) 703
PciSI GCTCTTC 1 cut(s) 1107
PcsI WCGNNNNNNNCGW 1 cut(s) 632
PctI GAATGC 1 cut(s) 433
PfeI GAWTC 3 cut(s) 158, 371, 1038
Pfl23II CGTACG 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 631
PfoI TCCNGGA 1 cut(s) 363
Ple19I CGATCG 1 cut(s) 135
PleI GAGTC 4 cut(s) 50, 89, 303, 726
PpsI GAGTC 4 cut(s) 50, 89, 303, 726
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspLI CGTACG 1 cut(s) 128
PspN4I GGNNCC 5 cut(s) 27, 442, 586, 619, 1204
PspPI GGNCC 6 cut(s) 316, 351, 441, 585, 842, 1203
PsyI GACNNNGTC 1 cut(s) 631
PvuI CGATCG 1 cut(s) 135
RsaI GTAC 2 cut(s) 130, 338
RsaNI GTAC 2 cut(s) 129, 337
RseI CAYNNNNRTG 3 cut(s) 894, 918, 984
Rsr2I CGGWCCG 1 cut(s) 316
RsrII CGGWCCG 1 cut(s) 316
SacI GAGCTC 1 cut(s) 48
SacII CCGCGG 2 cut(s) 465, 498
SapI GCTCTTC 1 cut(s) 1107
SaqAI TTAA 1 cut(s) 594
Sau3AI GATC 5 cut(s) 132, 226, 501, 572, 976
Sau96I GGNCC 6 cut(s) 316, 351, 441, 585, 842, 1203
SchI GAGTC 4 cut(s) 50, 89, 304, 727
ScrFI CCNGG 8 cut(s) 166, 324, 344, 355, 365, 438, 439, 523
SduI GDGCHC 1 cut(s) 48
SfaNI GCATC 5 cut(s) 182, 468, 775, 922, 988
Sfr303I CCGCGG 2 cut(s) 465, 498
SfuI TTCGAA 1 cut(s) 641
SgrBI CCGCGG 2 cut(s) 465, 498
SinI GGWCC 5 cut(s) 316, 351, 585, 842, 1203
SmaI CCCGGG 1 cut(s) 439
SmiMI CAYNNNNRTG 3 cut(s) 894, 918, 984
SmlI CTYRAG 1 cut(s) 1184
SmoI CTYRAG 1 cut(s) 1184
Sse9I AATT 9 cut(s) 299, 331, 560, 589, 637, 758, 769, 778, 809
SspMI CTAG 1 cut(s) 348
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 8 cut(s) 164, 322, 342, 353, 363, 436, 437, 521
StyI CCWWGG 1 cut(s) 39
TaiI ACGT 1 cut(s) 1214
TaqII GACCGA 2 cut(s) 247, 364
TasI AATT 9 cut(s) 299, 331, 560, 589, 637, 758, 769, 778, 809
TatI WGTACW 1 cut(s) 336
TauI GCSGC 8 cut(s) 270, 446, 455, 458, 464, 467, 497, 500
TfiI GAWTC 3 cut(s) 158, 371, 1038
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 1 cut(s) 796
TseI GCWGC 4 cut(s) 458, 910, 1163, 1166
TspDTI ATGAA 5 cut(s) 150, 660, 744, 822, 882
TspGWI ACGGA 2 cut(s) 106, 572
TspMI CCCGGG 1 cut(s) 437
TspRI CASTG 1 cut(s) 796
Tth111I GACNNNGTC 1 cut(s) 631
VpaK11BI GGWCC 5 cut(s) 316, 351, 585, 842, 1203
XapI RAATTY 4 cut(s) 331, 637, 769, 778
XmaI CCCGGG 1 cut(s) 437
XspI CTAG 1 cut(s) 348
Zsp2I ATGCAT 1 cut(s) 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.