Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006617

Physical Location & Seq

Genomic Coordinates Forward (+)

1472059 .. 1472857

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCCCATTTGCAGCACCGCCTTATCTCAGTTCCTCGCCTCCGATCCCAAACCGCCCCAAAGCGACGCCGTTTCCGTCACCGCAGCGCGGTCGAGTCAGTTGGAGGAGAAGTCGGTCCAGCTGGATTTGAATTTGTATAGTCGAGCTAGGTCCGGTGACTTCCCGGACGATCAGGTCGGGAGAGTTTCGCGGCCGTCGCTGTGGTTATTGGGAGGTGTGAGGACGAATGTGAAGCCCGGGGCGGCACTCGTGGCGACTGCGGCGGCTTCCAAGTCGATGCCGACGCCGCACGCCGCAGCGATCAAGTCGAGGAGGAGCGCCAAGAGCGGGAGCTTCCAAAAGGTTGTGGAGGCTGTGGTGGCTGCGGAATTGGGTGTGAGATCGGAGGATAGCAATGCGGTTGGTTTCGAAACGACGACGATGAGTTCGAATGGAGTAGAGGAGGGTTTTGGTGGTGAATTAGGGAGGAAAGAAATGGTCAATTTCTTGGTCCGGGGATTAAGATTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0006810 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016050 GO:0016192 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0034058 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0097708 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

ANAPC4_WD40 Clathrin Vps8

Protein Analysis

171

Amino Acids

17.91

Weight (kDa)

9.25

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00800 AT4G00800
fragaria_vesca	FvH4_3g34060 FvH4_7g01070 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640
malus_domestica	MD07G1159400.v1.1
prunus_persica	Prupe.2G197500_v2.0.a1
pyrus_communis	pycom01g11250 pycom07g15600
rosa_chinensis	RchiOBHm_Chr1g0361071
rosa_laevigata	RLG00000027750
rosa_multiflora	Rmu_sc0003333.1_g000009 Rmu_sc0014603.1_g000002 Rmu_sc0024329.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295450
rosa_rugosa	Rorug01G0285300
rosa_samantha	Rh1AG296700 Rh1BG261000 Rh1CG278300 Rh1DG291000
rosa_wichuraiana	Rw1G026210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AccBSI	CCGCTC	1 cut(s)	327
AccII	CGCG	2 cut(s)	88, 190
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	130
AcyI	GRCGYC	2 cut(s)	66, 284
AfiI	CCNNNNNNNGG	2 cut(s)	87, 327
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	3 cut(s)	121, 146, 333
AluI	AGCT	3 cut(s)	121, 146, 333
AlwI	GGATC	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	4 cut(s)	12, 83, 296, 362
ApoI	RAATTY	1 cut(s)	130
ArsI	GACNNNNNNTTYG	2 cut(s)	409, 441
AspLEI	GCGC	2 cut(s)	88, 320
AspS9I	GGNCC	3 cut(s)	115, 150, 490
AsuC2I	CCSGG	4 cut(s)	164, 237, 238, 494
AsuHPI	GGTGA	3 cut(s)	70, 167, 467
AsuII	TTCGAA	2 cut(s)	408, 428
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	3 cut(s)	115, 150, 490
BauI	CACGAG	1 cut(s)	248
BbvI	GCAGC	4 cut(s)	24, 95, 308, 349
BceAI	ACGGC	2 cut(s)	53, 178
BcgI	CGANNNNNNTGC	2 cut(s)	72, 106
BcnI	CCSGG	4 cut(s)	164, 237, 238, 494
BfaI	CTAG	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	321
Bme1390I	CCNGG	4 cut(s)	164, 237, 238, 494
Bme18I	GGWCC	3 cut(s)	115, 150, 490
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	3 cut(s)	115, 150, 490
BmrFI	CCNGG	4 cut(s)	164, 237, 238, 494
BmsI	GCATC	1 cut(s)	267
Bpu14I	TTCGAA	2 cut(s)	408, 428
BpuMI	CCSGG	4 cut(s)	164, 237, 238, 494
BsaHI	GRCGYC	2 cut(s)	66, 284
BsaJI	CCNNGG	3 cut(s)	236, 237, 493
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 327
Bse3DI	GCAATG	1 cut(s)	400
BseDI	CCNNGG	3 cut(s)	236, 237, 493
BseLI	CCNNNNNNNGG	2 cut(s)	87, 327
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	41
BseRI	GAGGAG	4 cut(s)	119, 325, 328, 455
BseX3I	CGGCCG	1 cut(s)	191
BseXI	GCAGC	4 cut(s)	24, 95, 308, 349
Bsh1236I	CGCG	2 cut(s)	88, 190
Bsh1285I	CGRYCG	2 cut(s)	92, 194
BshFI	GGCC	1 cut(s)	193
BsiEI	CGRYCG	2 cut(s)	92, 194
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	4 cut(s)	153, 164, 237, 493
BslI	CCNNNNNNNGG	2 cut(s)	87, 327
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	236
Bsp119I	TTCGAA	2 cut(s)	408, 428
Bsp143I	GATC	4 cut(s)	43, 169, 300, 380
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	2 cut(s)	88, 190
BspPI	GGATC	1 cut(s)	38
BspT104I	TTCGAA	2 cut(s)	408, 428
BsrBI	CCGCTC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	400
BssECI	CCNNGG	3 cut(s)	236, 237, 493
BssMI	GATC	4 cut(s)	43, 169, 300, 380
BssNI	GRCGYC	2 cut(s)	66, 284
BssSI	CACGAG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	248
BstACI	GRCGYC	2 cut(s)	66, 284
BstBI	TTCGAA	2 cut(s)	408, 428
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	27
BstFNI	CGCG	2 cut(s)	88, 190
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	2 cut(s)	88, 320
BstKTI	GATC	4 cut(s)	46, 172, 303, 383
BstMBI	GATC	4 cut(s)	43, 169, 300, 380
BstMCI	CGRYCG	2 cut(s)	92, 194
BstMWI	GCNNNNNNNGC	6 cut(s)	196, 251, 260, 286, 324, 359
BstSCI	CCNGG	4 cut(s)	162, 235, 236, 492
BstUI	CGCG	2 cut(s)	88, 190
BstV1I	GCAGC	4 cut(s)	24, 95, 308, 349
BstZI	CGGCCG	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	291
CfoI	GCGC	2 cut(s)	88, 320
Cfr13I	GGNCC	3 cut(s)	115, 150, 490
Cfr9I	CCCGGG	1 cut(s)	236
CseI	GACGC	2 cut(s)	74, 292
CviJI	RGCY	8 cut(s)	121, 146, 193, 235, 266, 333, 353, 362
CviKI_1	RGCY	8 cut(s)	121, 146, 193, 235, 266, 333, 353, 362
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	4 cut(s)	45, 171, 302, 382
DpnII	GATC	4 cut(s)	43, 169, 300, 380
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	191
EagI	CGGCCG	1 cut(s)	191
EclXI	CGGCCG	1 cut(s)	191
Eco47I	GGWCC	3 cut(s)	115, 150, 490
Eco52I	CGGCCG	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	236
FaiI	YATR	2 cut(s)	138, 511
FauI	CCCGC	1 cut(s)	320
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	2 cut(s)	87, 319
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	4 cut(s)	153, 164, 237, 493
HgaI	GACGC	2 cut(s)	74, 292
HhaI	GCGC	2 cut(s)	88, 320
Hin1I	GRCGYC	2 cut(s)	66, 284
Hin6I	GCGC	2 cut(s)	86, 318
HinP1I	GCGC	2 cut(s)	86, 318
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	4 cut(s)	153, 164, 237, 493
HphI	GGTGA	3 cut(s)	70, 167, 467
Hpy188I	TCNGA	2 cut(s)	43, 385
Hpy188III	TCNNGA	1 cut(s)	178
Hpy99I	CGWCG	5 cut(s)	68, 199, 286, 418, 421
HpyCH4V	TGCA	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	6 cut(s)	196, 251, 260, 286, 324, 359
HpyF3I	CTNAG	1 cut(s)	27
Hsp92I	GRCGYC	2 cut(s)	66, 284
HspAI	GCGC	2 cut(s)	86, 318
Kzo9I	GATC	4 cut(s)	43, 169, 300, 380
LmnI	GCTCC	2 cut(s)	315, 330
LpnPI	CCDG	7 cut(s)	107, 131, 158, 166, 177, 250, 506
Lsp1109I	GCAGC	4 cut(s)	24, 95, 308, 349
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	76, 155
MalI	GATC	4 cut(s)	45, 171, 302, 382
MbiI	CCGCTC	1 cut(s)	327
MboI	GATC	4 cut(s)	43, 169, 300, 380
MluCI	AATT	4 cut(s)	130, 368, 458, 481
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	81
MseI	TTAA	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	4 cut(s)	153, 164, 237, 493
MspR9I	CCNGG	4 cut(s)	164, 237, 238, 494
MvnI	CGCG	2 cut(s)	88, 190
MwoI	GCNNNNNNNGC	6 cut(s)	196, 251, 260, 286, 324, 359
NciI	CCSGG	4 cut(s)	164, 237, 238, 494
NdeII	GATC	4 cut(s)	43, 169, 300, 380
NmuCI	GTSAC	2 cut(s)	76, 155
NspV	TTCGAA	2 cut(s)	408, 428
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 425
PfoI	TCCNGGA	1 cut(s)	162
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PspPI	GGNCC	3 cut(s)	115, 150, 490
PvuII	CAGCTG	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	500
Sau3AI	GATC	4 cut(s)	43, 169, 300, 380
Sau96I	GGNCC	3 cut(s)	115, 150, 490
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	4 cut(s)	164, 237, 238, 494
SetI	ASST	7 cut(s)	123, 148, 152, 177, 217, 335, 345
SfaNI	GCATC	1 cut(s)	267
SfuI	TTCGAA	2 cut(s)	408, 428
SinI	GGWCC	3 cut(s)	115, 150, 490
SmaI	CCCGGG	1 cut(s)	238
Sse9I	AATT	4 cut(s)	130, 368, 458, 481
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	4 cut(s)	162, 235, 236, 492
TaqI	TCGA	6 cut(s)	92, 142, 275, 308, 408, 428
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	4 cut(s)	130, 368, 458, 481
TauI	GCSGC	6 cut(s)	193, 245, 263, 266, 289, 296
Tru1I	TTAA	1 cut(s)	500
Tru9I	TTAA	1 cut(s)	500
TseFI	GTSAC	2 cut(s)	76, 155
TseI	GCWGC	4 cut(s)	12, 83, 296, 362
Tsp45I	GTSAC	2 cut(s)	76, 155
TspGWI	ACGGA	1 cut(s)	64
TspMI	CCCGGG	1 cut(s)	236
VpaK11BI	GGWCC	3 cut(s)	115, 150, 490
XapI	RAATTY	1 cut(s)	130
XmaI	CCCGGG	1 cut(s)	236
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.