Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006617

Physical Location & Seq

Genomic Coordinates Forward (+)

40005660 .. 40007925

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0285300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTACTTGAAGAAGCCCCAATGGACGGAGGGAATCACCCCCAAGCCCTCGCCGGAATCCGAATCAGACTCACCGGCCACCGCCGTCGGCGATCTGGTCAACTCCTTGACCACCCAGAGAGTCTACCGCGAGGTCACGCTCGCGCTCCGAAGCGGCCTGAGGGAGGTCCGCGCCGAGTTCTCGTTCCTCCGAGTCCGCGGCCTCCGCTCGCTCCTCAAGTTCCTCCGATCCGTCGCCGAGTCCGACTCCACCATCAACCTCTTCTCCCAGACCCAATCGATTCCGGAGCTTCAAGTGGTGCCGGTTCTGTTTCAACACTCGCTGAAAGAGGCGGAGGACGAGATCGTGAGGAATTTGGATCACATTTTCGGCGTGGAGCCTCTGAAAATCACCACTCCTTCGACTGACTCGGAGATTTCGCTCGCGCTTCGGGTTTTGGAAGGGTGCTGTTTGCTTCATCGGGAAAGTGCCGTCTTGGCTCACCAGCACAAGGCTATTCAGGTGTTGATGAATGTATTACCTACTAGAGGAGTGGCTGAGCAGGGTGTGTGCTTGGATGCTTTGACTGCCATTATGTTGGATTCGTCGGCTAATCAAATGGACTTTGAGGCACTTAATGGTATCGAGGAAGTTGCAGAGCTTATAAGAGATAAGCAAGTTGATGAGAATCTTAGGTTGAAATGCGGAGAGTTCCTGCTGCTACTCATAGGGCATGTAAATGGGAGGGACAGGCCACCCTTGGCAACTGTACATGAAGACATAAAGCGACTTTTGGGTGAGAAATCTGCTTCCCTTATCTGGGCGGCCAGTCAATTTGGCTCAACTCTTGATCCGGAGCAAAGACTAACTGCCCTTCACATCCAAGCTCGTCGTGTACTGGAGTCATTGGACCTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0006810 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0016050 GO:0016192 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0034058 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0097708 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

ANAPC4_WD40 Clathrin Vps8

Protein Analysis

299

Amino Acids

33.32

Weight (kDa)

5.46

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC14	PF08045	131 - 233	4.8e-12	Cell division control protein 14, SIN component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00800 AT4G00800
fragaria_vesca	FvH4_3g34060 FvH4_7g01070 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640 FvH4_7g17640
malus_domestica	MD07G1159400.v1.1
prunus_persica	Prupe.2G197500_v2.0.a1
pyrus_communis	pycom01g11250 pycom07g15600
rosa_chinensis	RchiOBHm_Chr1g0361071
rosa_laevigata	RLG00000027750
rosa_multiflora	Rmu_sc0003333.1_g000009 Rmu_sc0014603.1_g000002 Rmu_sc0024329.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295450
rosa_rugosa	Rorug01G0285300
rosa_samantha	Rh1AG296700 Rh1BG261000 Rh1CG278300 Rh1DG291000
rosa_wichuraiana	Rw1G026210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
AccB1I	GGYRCC	1 cut(s)	298
AccBSI	CCGCTC	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	5 cut(s)	129, 143, 171, 198, 425
AccIII	TCCGGA	2 cut(s)	283, 832
AclWI	GGATC	3 cut(s)	222, 366, 824
AcoI	YGGCCR	2 cut(s)	75, 804
AcsI	RAATTY	1 cut(s)	352
AfaI	GTAC	4 cut(s)	5, 750, 876, 896
AfiI	CCNNNNNNNGG	6 cut(s)	25, 163, 490, 527, 798, 799
AgsI	TTSAA	4 cut(s)	10, 293, 314, 679
AluBI	AGCT	3 cut(s)	289, 640, 866
AluI	AGCT	3 cut(s)	289, 640, 866
AlwI	GGATC	3 cut(s)	222, 366, 824
Aor13HI	TCCGGA	2 cut(s)	283, 832
AoxI	GGCC	5 cut(s)	75, 154, 199, 731, 804
ApeKI	GCWGC	1 cut(s)	697
ApoI	RAATTY	1 cut(s)	352
AspLEI	GCGC	3 cut(s)	145, 173, 427
AspS9I	GGNCC	2 cut(s)	166, 889
AsuHPI	GGTGA	5 cut(s)	28, 63, 382, 473, 788
AvaII	GGWCC	2 cut(s)	166, 889
AxyI	CCTNAGG	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	762
BbvI	GCAGC	1 cut(s)	684
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	2 cut(s)	68, 455
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BfaI	CTAG	1 cut(s)	525
BglI	GCCNNNNNGGC	1 cut(s)	476
BisI	GCNGC	4 cut(s)	154, 199, 698, 804
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	4 cut(s)	155, 200, 699, 805
Bme18I	GGWCC	2 cut(s)	166, 889
BmgT120I	GGNCC	2 cut(s)	166, 889
BmiI	GGNNCC	2 cut(s)	300, 378
BmsI	GCATC	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	762
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpmI	CTGGAG	1 cut(s)	899
Bpu1102I	GCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	200
Bsa29I	ATCGAT	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	666
BsaJI	CCNNGG	2 cut(s)	196, 738
BsaWI	WCCGGW	2 cut(s)	283, 832
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	6 cut(s)	25, 163, 490, 527, 798, 799
Bse118I	RCCGGY	2 cut(s)	73, 301
Bse1I	ACTGG	2 cut(s)	807, 882
Bse21I	CCTNAGG	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	666
BseAI	TCCGGA	2 cut(s)	283, 832
BseCI	ATCGAT	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	196, 738
BseGI	GGATG	2 cut(s)	562, 858
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	6 cut(s)	25, 163, 490, 527, 798, 799
BseMII	CTCAG	2 cut(s)	149, 528
BseNI	ACTGG	2 cut(s)	807, 882
BseRI	GAGGAG	2 cut(s)	203, 543
BseXI	GCAGC	1 cut(s)	684
Bsh1236I	CGCG	5 cut(s)	129, 143, 171, 198, 425
BshFI	GGCC	5 cut(s)	77, 156, 201, 733, 806
BshNI	GGYRCC	1 cut(s)	298
BshVI	ATCGAT	1 cut(s)	278
BsiSI	CCGG	5 cut(s)	53, 74, 284, 302, 833
BslFI	GGGAC	1 cut(s)	740
BslI	CCNNNNNNNGG	6 cut(s)	25, 163, 490, 527, 798, 799
BsmFI	GGGAC	1 cut(s)	740
BsnI	GGCC	5 cut(s)	77, 156, 201, 733, 806
Bsp13I	TCCGGA	2 cut(s)	283, 832
Bsp1407I	TGTACA	1 cut(s)	748
Bsp143I	GATC	5 cut(s)	91, 227, 342, 358, 829
Bsp1720I	GCTNAGC	1 cut(s)	537
BspANI	GGCC	5 cut(s)	77, 156, 201, 733, 806
BspCNI	CTCAG	2 cut(s)	150, 529
BspDI	ATCGAT	1 cut(s)	278
BspEI	TCCGGA	2 cut(s)	283, 832
BspFNI	CGCG	5 cut(s)	129, 143, 171, 198, 425
BspLI	GGNNCC	2 cut(s)	300, 378
BspPI	GGATC	3 cut(s)	222, 366, 824
BspT107I	GGYRCC	1 cut(s)	298
BsrBI	CCGCTC	1 cut(s)	207
BsrFI	RCCGGY	2 cut(s)	73, 301
BsrGI	TGTACA	1 cut(s)	748
BsrI	ACTGG	2 cut(s)	807, 882
BssAI	RCCGGY	2 cut(s)	73, 301
BssECI	CCNNGG	2 cut(s)	196, 738
BssMI	GATC	5 cut(s)	91, 227, 342, 358, 829
BssT1I	CCWWGG	1 cut(s)	738
Bst4CI	ACNGT	1 cut(s)	748
Bst6I	CTCTTC	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	748
BstC8I	GCNNGC	3 cut(s)	141, 209, 423
BstDEI	CTNAG	3 cut(s)	158, 537, 671
BstDSI	CCRYGG	1 cut(s)	196
BstENI	CCTNNNNNAGG	2 cut(s)	161, 525
BstF5I	GGATG	2 cut(s)	562, 858
BstFNI	CGCG	5 cut(s)	129, 143, 171, 198, 425
BstHHI	GCGC	3 cut(s)	145, 173, 427
BstKTI	GATC	5 cut(s)	94, 230, 345, 361, 832
BstMBI	GATC	5 cut(s)	91, 227, 342, 358, 829
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 476, 566
BstNSI	RCATGY	1 cut(s)	716
BstUI	CGCG	5 cut(s)	129, 143, 171, 198, 425
BstV1I	GCAGC	1 cut(s)	684
BstV2I	GAAGAC	1 cut(s)	762
BstXI	CCANNNNNNTGG	1 cut(s)	577
Bsu15I	ATCGAT	1 cut(s)	278
Bsu36I	CCTNAGG	1 cut(s)	158
BsuRI	GGCC	5 cut(s)	77, 156, 201, 733, 806
BsuTUI	ATCGAT	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	562, 858
Cac8I	GCNNGC	3 cut(s)	141, 209, 423
CfoI	GCGC	3 cut(s)	145, 173, 427
Cfr10I	RCCGGY	2 cut(s)	73, 301
Cfr13I	GGNCC	2 cut(s)	166, 889
Cfr42I	CCGCGG	1 cut(s)	199
ClaI	ATCGAT	1 cut(s)	278
Csp6I	GTAC	4 cut(s)	4, 749, 875, 895
CviAII	CATG	2 cut(s)	713, 752
CviQI	GTAC	4 cut(s)	4, 749, 875, 895
DdeI	CTNAG	3 cut(s)	158, 537, 671
DpnI	GATC	5 cut(s)	93, 229, 344, 360, 831
DpnII	GATC	5 cut(s)	91, 227, 342, 358, 829
EaeI	YGGCCR	2 cut(s)	75, 804
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	347
Eco130I	CCWWGG	1 cut(s)	738
Eco47I	GGWCC	2 cut(s)	166, 889
Eco81I	CCTNAGG	1 cut(s)	158
EcoNI	CCTNNNNNAGG	2 cut(s)	161, 525
EcoT14I	CCWWGG	1 cut(s)	738
ErhI	CCWWGG	1 cut(s)	738
FaeI	CATG	2 cut(s)	716, 755
FaiI	YATR	6 cut(s)	575, 644, 707, 714, 753, 761
FaqI	GGGAC	1 cut(s)	740
FatI	CATG	2 cut(s)	712, 751
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	4 cut(s)	154, 199, 698, 804
FokI	GGATG	2 cut(s)	569, 845
Fsp4HI	GCNGC	4 cut(s)	154, 199, 698, 804
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	3 cut(s)	144, 172, 426
GluI	GCNGC	4 cut(s)	154, 199, 698, 804
GsuI	CTGGAG	1 cut(s)	899
HaeIII	GGCC	5 cut(s)	77, 156, 201, 733, 806
HapII	CCGG	5 cut(s)	53, 74, 284, 302, 833
HhaI	GCGC	3 cut(s)	145, 173, 427
Hin1II	CATG	2 cut(s)	716, 755
Hin6I	GCGC	3 cut(s)	143, 171, 425
HinP1I	GCGC	3 cut(s)	143, 171, 425
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HpaII	CCGG	5 cut(s)	53, 74, 284, 302, 833
HphI	GGTGA	5 cut(s)	28, 63, 382, 473, 788
Hpy166II	GTNNAC	3 cut(s)	100, 124, 875
Hpy188I	TCNGA	8 cut(s)	61, 67, 149, 191, 227, 244, 384, 412
Hpy188III	TCNNGA	5 cut(s)	284, 346, 461, 827, 833
Hpy8I	GTNNAC	3 cut(s)	100, 124, 875
Hpy99I	CGWCG	4 cut(s)	89, 236, 589, 873
HpyAV	CCTTC	3 cut(s)	408, 434, 863
HpyCH4III	ACNGT	1 cut(s)	748
HpyCH4V	TGCA	1 cut(s)	635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 476, 566
HpyF3I	CTNAG	3 cut(s)	158, 537, 671
Hsp92II	CATG	2 cut(s)	716, 755
HspAI	GCGC	3 cut(s)	143, 171, 425
Kpn2I	TCCGGA	2 cut(s)	283, 832
KspI	CCGCGG	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	91, 227, 342, 358, 829
LmnI	GCTCC	5 cut(s)	150, 216, 286, 376, 835
Lsp1109I	GCAGC	1 cut(s)	684
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	1 cut(s)	525
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	5 cut(s)	93, 229, 344, 360, 831
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	5 cut(s)	91, 227, 342, 358, 829
MboII	GAAGA	3 cut(s)	22, 253, 767
MluCI	AATT	2 cut(s)	352, 812
MlyI	GAGTC	7 cut(s)	62, 129, 201, 239, 248, 401, 890
MmeI	TCCRAC	2 cut(s)	267, 558
MroI	TCCGGA	2 cut(s)	283, 832
MseI	TTAA	1 cut(s)	615
MslI	CAYNNNNRTG	1 cut(s)	717
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	5 cut(s)	53, 74, 284, 302, 833
MvnI	CGCG	5 cut(s)	129, 143, 171, 198, 425
MwoI	GCNNNNNNNGC	3 cut(s)	204, 476, 566
NdeII	GATC	5 cut(s)	91, 227, 342, 358, 829
NlaIII	CATG	2 cut(s)	716, 755
NlaIV	GGNNCC	2 cut(s)	300, 378
NmeAIII	GCCGAG	2 cut(s)	199, 262
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PfeI	GAWTC	6 cut(s)	33, 56, 62, 280, 581, 667
PkrI	GCNGC	4 cut(s)	155, 200, 699, 805
PleI	GAGTC	7 cut(s)	62, 128, 200, 239, 247, 401, 889
PpsI	GAGTC	7 cut(s)	62, 128, 200, 239, 247, 401, 889
PsiI	TTATAA	1 cut(s)	644
PspN4I	GGNNCC	2 cut(s)	300, 378
PspPI	GGNCC	2 cut(s)	166, 889
RsaI	GTAC	4 cut(s)	5, 750, 876, 896
RsaNI	GTAC	4 cut(s)	4, 749, 875, 895
RseI	CAYNNNNRTG	1 cut(s)	717
SacII	CCGCGG	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	4 cut(s)	154, 199, 698, 804
Sau3AI	GATC	5 cut(s)	91, 227, 342, 358, 829
Sau96I	GGNCC	2 cut(s)	166, 889
SchI	GAGTC	7 cut(s)	62, 129, 201, 239, 248, 401, 890
SfaNI	GCATC	1 cut(s)	547
Sfr303I	CCGCGG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	166, 889
SmiMI	CAYNNNNRTG	1 cut(s)	717
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	352, 812
SspMI	CTAG	1 cut(s)	525
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	1 cut(s)	748
TaqI	TCGA	3 cut(s)	278, 401, 624
TasI	AATT	2 cut(s)	352, 812
TatI	WGTACW	4 cut(s)	3, 748, 874, 894
TauI	GCSGC	3 cut(s)	156, 201, 806
TfiI	GAWTC	6 cut(s)	33, 56, 62, 280, 581, 667
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	697
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	3 cut(s)	446, 524, 768
TspGWI	ACGGA	2 cut(s)	41, 220
VpaK11BI	GGWCC	2 cut(s)	166, 889
XagI	CCTNNNNNAGG	2 cut(s)	161, 525
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	1 cut(s)	716
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.