FvH4_3g37470

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002401
Physical Location & Seq
Reverse (-)
32140953 .. 32150062
9110 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37470.t5

Sequence Viewer

Length: 3951 bp
ATGGGGTTTGATAATGAGTGCATACTGAATATCCAATCTCTTGCGGGGGAGTACTTTTGCCCGGTGTGTCGTCTTCTCGTCTACCCAAATGAAGCATTACAGTCACAGTGCACTCATCTGTACTGTAAGCCTTGTTTGACATATGTTGTGAGCACTACCAAAGCGTGTCCGTACGATGGCTACTTAGTGACAGAGGCAGATGCCAAGCCCCTTGTTGAATCAAATAAGACGCTCGCTGAAACCATTGGGAAGATAGGAGTTCATTGCCTGTATCACAGGAGTGGGTGCCCATGGCAGGGGCCTTTATCTGATTGCACATCTCATTGTTTTGGTTGTGCCTTTGGAAATTCTCCCGTAGTGTGCAACAGGTGCGGAATCCAAATTGTGCATTGTCAAGTGCAGGAACATGCACAAAGTTGCCCTGGTGTGCAGCCCCAAGCACAGCAGGCAGAGGGTGCCACCTCAGCCTCTGGCACAGCTACTTCTACTGATCAGACCCAGGCTGCCACTCAGATAGGTACAGCAACGTCTCAGTCACAGGTTTCCCAAACCGCAAGTGCCACTATACCTGGAGCTGATCCAAATTCTCAAGCTCAAGCTGTCGTTCAAGCTGCTGCTCCGACTGCTGACCAGTGGTATCAGCAACAATATCAGCAGTACTACCAGCAGTATCCTGGATATGATCCATATCAACAACAGTATCAGCAGTACTATCCCTATCAGCAGCCAGGAATTCCACAACCACAGCAACCAGCAATTCCACAACAACAGCAGCCTTTGCAGGCTAATCCACCCTATGGGACAGTCCAGTCTCAACAACAGGCATACCTGCAACCTCCTCTCGTATCTCAACCTCAACTACATACCCAACAATCTCAATCTCATGCTCAACCCCAACCAGTAGTTCAGCCTCCACTTGTGCAGGCTCCTATGGCTGTGCAAACTCAAAACCAGACATCAGTCAACCAACAGCTTCAATTTCAGCCTGCTGTGGCACCACATTCACAAATTCAAGCACAGACTTACCCATCAGCTCATGGGCAAGCTCAACTTCCGCCTCAAGCATATTTCCAAGCCCAAATGACTCAATATCAGCAGCCCCAGGTTCAGCAGATTACACAGACACAGCTTCAACAGAATCCCCAGCTTCACCCATCTCAGCCCATGAATGCTACAGTCCAGTCTCAGACACAGCTCCCATCATCTAATGCATCAGCTGGCCATCATCTGTTCCCTCAATCTCACCCTCATCAACCAGTGCTCTCAGCAGCCCCCCAACAACGTACTGTGCATTTGCAATCTCAAGGAGCGCCTAATTCTCAGTCACAAAACCATGTTCAGACTCAGATTCAGTTCCCTCTACAACCCCCACTTTTGCGACCACCGCCATTTCAAACAACAATTCCAAACCAGCCGCAGACAGCCTTGTTGCCTTCACCTAGCATGATCTCTGCACAACAGCCTCCAGTTCACTCCTTTGCTCAACAACCTGGAATTCCTCCTCTCCAGCGACCTCTAATCCAGCCAGTCCAACAGCTAAATCCTCAGCAGTATTTCCAGAATCAGCCCTATGTACAACAGACACCTGCCACATTGTCGCAATTACGTCCCCAGGGCCAATCTCATTCATTCCCACAACATATACGTGCCTCAAACCAGTCTCAGCAGAATGTTGTATTGTCTCAGGGAATGCAACATATTCAGCCTTCAAATCTTGTGGGACGGCCTATGATGCCAAGTCATGGAGTACTACCTCAGCCATATGCACAAACAGTTGGAGGAGTTCTGCCAAGGCCAATGTATCCTCCTTTAAACCATCAATCTTCAAATCAGAATAATATAGGCAGAACCAACAACCAAGTGCAACCGGGAGCAAATTCAAGACCAACAATGACCACAAGGCCAGCAGAGAAAGAAGCTGAGTTATCTGCTAAGAATGGTGCACAGGATGTGGGTGTCTCGTCTGCTGTAGTTGCTGATTCCGAAGCTAAAACTGTAAAATCTGAGGTGGATATAAAGTCCACTGATGATGGAAATAAACCTTCTTCTGAAGACAGGAGTTATCAGGGTACCAAGGAGATTCCAGAGTCTAAGGGGATGTTGGGGGCGAATGGAGAGTCTGAAAGTAAGCCAACGTTGAAGGAAGAGGGTGTAGATAGTACTTTGGAGGATTTAAGCAATGGTAAACTGGGTGAACTTGTAGCTGAAGGTGCAAAAGATGCTCCCAGCAGTGGCATGAAACTGGGGGAGCATAAAGAAATGCCACCAGAAGAAGCTCAACTTCATGGAGTAAAGGATAAAAAATTGCAAAAAGTTGTTAGTAGCACTGAGGAGGGTTCTCAAACTGTTTCTATATCTTCAGCTCCTATAGGTCAGGTACAAGCTGGCGGCCTAATGCAACCTTCCCATCCTGGTTCTGCTATACTCCAGCAAAAGCCAGGGGCACCTCCTTTGTTACAAGTGCCTTCTTCAGGGCCTCCACATCATATACTGGGTTCTGGGCAGCCCTTAGCTCATGTAAGGCCTCAGGGACCTGGACATGTGCCTGGGCATCCTTCTCATCTATCTGAGCATTTCCAATCACCTAGGGGAAACCTGGGATTTGCAGCATCATCTGCGAATGCAAGTCAGCATGGGCCTTATAACCAAAGCCATGCACCTCCTCATTCAGGGGCACCCAGAGGGCCACCATTTGCACCTCCCCCTAGTGCTTTTGATTCTCATGGAGGTATAATGGCCCGAGCAGCACCCTATGGCCATGAAGGTCAGATGGGCCTACAGAGGCCAGCTTTTCAGATGGAACAGGGAGCAACTGGACAGCCATCTGGTATCATCTCAAACATGCTCAGGATGAATGGAAATCCAGGCTTCGAATCCTCATCAACTCTGGGGTTGAGGGATGAAAGATTTAAAGCTTTGCCGGATGGGAGGTTGAATCCCTTCCCAGGAGACCCAACTCGTGTGATTAGTCGAGTAGGGTTTGAAGATGATCTCAAGCAATTCCCTAGGCCTTCTTTTCTGGATTCTGAGCCTCTTCCAAAACTAGGGAATTACTCATCTCGAGCCTTTGATAGGAGACCTTTCGGAGTCAATTATGATACTCGTCTAAATATAGATCCTGCGGCTGGCTCTGCTCCAAGGTTCCTGTCTCCTTATGGTCACGCTGGATTAATTCATGCCAATGATACAATTGGTCACCCAGATTTTGGTGGACGGCGCCTTATGGACGGTTTGGCCCGACGAAGTCCAATCAGAGATTACCCTGGCATCCCATCTCGATTTAGGGGATTTGGCCCTGATGATTTTGATGGCAGGGAATTCCATCGATTTGGTGATCCACTTGGCAGGGAATTCCATGATAATAGGTTTCCTAATCAACATTTTCGGCGGGGAGAGTTTGAGGGTCCTGGTAATATGCGAGTAGATGATCGTATGAGGAATGATTTGATTGGTCAAGATGGTCACTTAGGTCATCTTCAGAGGGGAGAGCATCTGGGTCCTCATAACTTGCCTGGTCATTTGCATATGCGAGAGCATGTGGGTTTTGGTGTCCATCCTCGACATGCAGGGCCTGGGAGCTTTGAATCGTTTATTGGTAACAGGGCTAATCATCCACGTCTTGGTGAGCCTGGATTTAGGAGCAGCTTTTCACTTAAGAGATTTCCAAATGATGGCACTTATGCAGGAGAGCTGGAGTCTTTTGATCACTCAAGGAAAAGGAAGCCAGCAAGCATGGGATGGTGTCGTATCTGTAAAGTTAACTGCGAAACAGTTGAGGGCTTGGATGTGCATTCACAAACAAGGGAACACCAGAGAATGGCTATGGAAATGGTACAAATTATCAAGCAGAATGCCAAGAAGCAGAAACTAACCTCTGGTGATCAGTCCTCGATAGAGGATGCAAACAAGTCAAAGATTACCAGTTCCGAGAGCCAGAGTGAAAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000793 GO:0000794 GO:0001701 GO:0001756 GO:0001932 GO:0002020 GO:0002791 GO:0002793 GO:0003002 GO:0003007 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003300 GO:0003674 GO:0003779 GO:0003824 GO:0004672 GO:0004674 GO:0004713 GO:0005198 GO:0005200 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005856 GO:0005859 GO:0005865 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006936 GO:0006941 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0007399 GO:0007417 GO:0007420 GO:0007507 GO:0007512 GO:0007517 GO:0008015 GO:0008092 GO:0008150 GO:0008152 GO:0008307 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009888 GO:0009893 GO:0009952 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010604 GO:0010628 GO:0010737 GO:0010927 GO:0014706 GO:0014866 GO:0014896 GO:0014897 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016459 GO:0016460 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0021591 GO:0022607 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030036 GO:0030154 GO:0030239 GO:0030240 GO:0030241 GO:0030506 GO:0031032 GO:0031033 GO:0031034 GO:0031323 GO:0031399 GO:0031430 GO:0031433 GO:0031672 GO:0031674 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032989 GO:0032991 GO:0033058 GO:0034622 GO:0035051 GO:0035265 GO:0035282 GO:0035556 GO:0035994 GO:0035995 GO:0036211 GO:0036379 GO:0040007 GO:0040011 GO:0042221 GO:0042325 GO:0042692 GO:0042802 GO:0042805 GO:0043009 GO:0043056 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043292 GO:0043412 GO:0043549 GO:0043621 GO:0043933 GO:0044057 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0044877 GO:0045214 GO:0045859 GO:0046872 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048589 GO:0048644 GO:0048646 GO:0048729 GO:0048731 GO:0048738 GO:0048739 GO:0048747 GO:0048769 GO:0048856 GO:0048869 GO:0050708 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050982 GO:0051015 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051146 GO:0051171 GO:0051174 GO:0051222 GO:0051223 GO:0051239 GO:0051246 GO:0051338 GO:0051371 GO:0051393 GO:0051592 GO:0051606 GO:0051716 GO:0055001 GO:0055002 GO:0055003 GO:0055006 GO:0055007 GO:0055008 GO:0055013 GO:0060047 GO:0060048 GO:0060255 GO:0060322 GO:0060415 GO:0060419 GO:0060429 GO:0060537 GO:0061053 GO:0061061 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070925 GO:0071688 GO:0071704 GO:0071840 GO:0072359 GO:0080090 GO:0090087 GO:0090257 GO:0097435 GO:0097493 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901077 GO:1901564 GO:1901897 GO:1903530 GO:1903532 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1317

Amino Acids

143.36

Weight (kDa)

7.24

Isoelectric Point (pI)

59.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2643
AarI CACCTGC 1 cut(s) 1594
AasI GACNNNNNNGTC 1 cut(s) 808
Acc36I ACCTGC 2 cut(s) 837, 1594
Acc65I GGTACC 1 cut(s) 2069
AccB1I GGYRCC 7 cut(s) 285, 455, 994, 2069, 2443, 2674, 3216
AccB7I CCANNNNNTGG 6 cut(s) 797, 1742, 3206, 3620, 3671, 3817
AccI GTMKAC 1 cut(s) 81
AciI CCGC 9 cut(s) 44, 372, 552, 1055, 1385, 1415, 2388, 3122, 3388
AclI AACGTT 1 cut(s) 2135
AclWI GGATC 4 cut(s) 572, 677, 3110, 3329
AcoI YGGCCR 2 cut(s) 1219, 2755
AcsI RAATTY 8 cut(s) 346, 583, 732, 1008, 1494, 1876, 3317, 3350
AcuI CTGAAG 5 cut(s) 2070, 2226, 2343, 2454, 3461
AcyI GRCGYC 1 cut(s) 3217
AflII CTTAAG 1 cut(s) 3653
AflIII ACRYGT 1 cut(s) 2539
AjiI CACGTC 1 cut(s) 3617
AjuI GAANNNNNNNTTGG 4 cut(s) 888, 920, 3576, 3608
AleI CACNNNNGTG 1 cut(s) 279
Alw21I GWGCWC 4 cut(s) 113, 155, 1263, 1945
Alw26I GTCTC 9 cut(s) 534, 816, 1188, 1665, 1686, 1963, 2943, 3070, 3153
Alw44I GTGCAC 2 cut(s) 109, 1941
AlwI GGATC 4 cut(s) 572, 677, 3110, 3329
AlwNI CAGNNNCTG 2 cut(s) 470, 3572
Ama87I CYCGRG 2 cut(s) 2739, 3060
ApaLI GTGCAC 2 cut(s) 109, 1941
ApoI RAATTY 8 cut(s) 346, 583, 732, 1008, 1494, 1876, 3317, 3350
ArsI GACNNNNNNTTYG 2 cut(s) 2102, 2134
AseI ATTAAT 1 cut(s) 3170
Asp700I GAANNNNTTC 1 cut(s) 2939
Asp718I GGTACC 1 cut(s) 2069
AspA2I CCTAGG 2 cut(s) 2585, 3005
AspLEI GCGC 2 cut(s) 1312, 3219
AsuC2I CCSGG 2 cut(s) 62, 1869
AsuHPI GGTGA 9 cut(s) 1142, 1235, 1428, 2204, 2574, 3188, 3344, 3635, 3890
AsuII TTCGAA 1 cut(s) 2871
AvaI CYCGRG 2 cut(s) 2739, 3060
AvaII GGWCC 3 cut(s) 2531, 3404, 3497
AvrII CCTAGG 2 cut(s) 2585, 3005
AxyI CCTNAGG 1 cut(s) 2526
BaeGI GKGCMC 5 cut(s) 113, 290, 1945, 2446, 2677
BaeI ACNNNNGTAYC 2 cut(s) 683, 716
BalI TGGCCA 2 cut(s) 1221, 2757
BanI GGYRCC 7 cut(s) 285, 455, 994, 2069, 2443, 2674, 3216
BauI CACGAG 1 cut(s) 2958
BbsI GAAGAC 2 cut(s) 65, 2058
Bbv12I GWGCWC 4 cut(s) 113, 155, 1263, 1945
BbvCI CCTCAGC 3 cut(s) 463, 1545, 1755
BceAI ACGGC 2 cut(s) 1739, 3230
BciVI GTATCC 2 cut(s) 681, 1812
BclI TGATCA 3 cut(s) 490, 3703, 3880
BcnI CCSGG 2 cut(s) 62, 1869
BcoDI GTCTC 9 cut(s) 534, 816, 1188, 1665, 1686, 1963, 2943, 3070, 3153
BfaI CTAG 5 cut(s) 1440, 2586, 2706, 3006, 3044
BfmI CTRYAG 4 cut(s) 1173, 1968, 2367, 2777
BfoI RGCGCY 2 cut(s) 1313, 3220
BfrI CTTAAG 1 cut(s) 3653
BfuAI ACCTGC 2 cut(s) 837, 1594
BfuI GTATCC 2 cut(s) 681, 1812
BlnI CCTAGG 2 cut(s) 2585, 3005
BmcAI AGTACT 5 cut(s) 53, 659, 710, 1749, 2161
Bme18I GGWCC 3 cut(s) 2531, 3404, 3497
BmeT110I CYCGRG 2 cut(s) 2739, 3060
BmgBI CACGTC 1 cut(s) 3617
BmrI ACTGGG 3 cut(s) 2198, 2252, 2501
BmsI GCATC 9 cut(s) 190, 1220, 1722, 2209, 2560, 2618, 3276, 3499, 3889
BmuI ACTGGG 3 cut(s) 2198, 2252, 2501
BoxI GACNNNNGTC 1 cut(s) 959
BpiI GAAGAC 2 cut(s) 65, 2058
BpmI CTGGAG 5 cut(s) 591, 1449, 1490, 2411, 3713
Bpu10I CCTNAGC 5 cut(s) 463, 1545, 1755, 2509, 2846
Bpu14I TTCGAA 1 cut(s) 2871
BpuEI CTTGAG 6 cut(s) 573, 579, 1044, 1287, 2978, 3694
BpuMI CCSGG 2 cut(s) 62, 1869
Bsa29I ATCGAT 1 cut(s) 3325
BsaAI YACGTR 1 cut(s) 1646
BsaBI GATNNNNATC 1 cut(s) 687
BsaHI GRCGYC 1 cut(s) 3217
BsaI GGTCTC 2 cut(s) 2943, 3070
Bse21I CCTNAGG 1 cut(s) 2526
Bse3DI GCAATG 2 cut(s) 262, 2185
Bse8I GATNNNNATC 1 cut(s) 687
BseCI ATCGAT 1 cut(s) 3325
BseJI GATNNNNATC 1 cut(s) 687
BseMI GCAATG 2 cut(s) 262, 2185
BseRI GAGGAG 5 cut(s) 828, 1491, 1794, 2345, 2652
BseSI GKGCMC 5 cut(s) 113, 290, 1945, 2446, 2677
BseYI CCCAGC 2 cut(s) 1143, 2225
BsgI GTGCAG 4 cut(s) 419, 449, 941, 1437
BshNI GGYRCC 7 cut(s) 285, 455, 994, 2069, 2443, 2674, 3216
BshVI ATCGAT 1 cut(s) 3325
BsiHKAI GWGCWC 4 cut(s) 113, 155, 1263, 1945
BsiHKCI CYCGRG 2 cut(s) 2739, 3060
BsiSI CCGG 3 cut(s) 62, 1868, 2921
BsiWI CGTACG 1 cut(s) 171
BslFI GGGAC 4 cut(s) 814, 1593, 1734, 2544
BsmAI GTCTC 9 cut(s) 534, 816, 1188, 1665, 1686, 1963, 2943, 3070, 3153
BsmBI CGTCTC 1 cut(s) 534
BsmFI GGGAC 4 cut(s) 814, 1593, 1734, 2544
BsmI GAATGC 5 cut(s) 1174, 1695, 2626, 3790, 3856
Bso31I GGTCTC 2 cut(s) 2943, 3070
BsoBI CYCGRG 2 cut(s) 2739, 3060
Bsp119I TTCGAA 1 cut(s) 2871
Bsp1286I GDGCHC 7 cut(s) 113, 155, 290, 1263, 1945, 2446, 2677
Bsp1407I TGTACA 1 cut(s) 1573
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 9 cut(s) 44, 372, 552, 1055, 1385, 1415, 2388, 3122, 3388
BspDI ATCGAT 1 cut(s) 3325
BspMI ACCTGC 2 cut(s) 837, 1594
BspPI GGATC 4 cut(s) 572, 677, 3110, 3329
BspT104I TTCGAA 1 cut(s) 2871
BspT107I GGYRCC 7 cut(s) 285, 455, 994, 2069, 2443, 2674, 3216
BspTI CTTAAG 1 cut(s) 3653
BspTNI GGTCTC 2 cut(s) 2943, 3070
BsrDI GCAATG 2 cut(s) 262, 2185
BsrGI TGTACA 1 cut(s) 1573
BssNI GRCGYC 1 cut(s) 3217
BssSI CACGAG 1 cut(s) 2958
BssT1I CCWWGG 6 cut(s) 290, 1790, 2073, 2585, 3005, 3137
Bst2BI CACGAG 1 cut(s) 2958
Bst6I CTCTTC 2 cut(s) 2139, 3039
BstACI GRCGYC 1 cut(s) 3217
BstAFI CTTAAG 1 cut(s) 3653
BstAPI GCANNNNNTGC 5 cut(s) 369, 455, 778, 2219, 2615
BstAUI TGTACA 1 cut(s) 1573
BstBAI YACGTR 1 cut(s) 1646
BstBI TTCGAA 1 cut(s) 2871
BstDSI CCRYGG 1 cut(s) 290
BstEII GGTNACC 1 cut(s) 3194
BstENI CCTNNNNNAGG 3 cut(s) 2469, 2667, 3070
BstH2I RGCGCY 2 cut(s) 1313, 3220
BstHHI GCGC 2 cut(s) 1312, 3219
BstMAI GTCTC 9 cut(s) 534, 816, 1188, 1665, 1686, 1963, 2943, 3070, 3153
BstNSI RCATGY 5 cut(s) 410, 2543, 2845, 3539, 3566
BstPAI GACNNNNGTC 1 cut(s) 959
BstPI GGTNACC 1 cut(s) 3194
BstSFI CTRYAG 4 cut(s) 1173, 1968, 2367, 2777
BstSLI GKGCMC 5 cut(s) 113, 290, 1945, 2446, 2677
BstV2I GAAGAC 2 cut(s) 65, 2058
BstX2I RGATCY 1 cut(s) 3115
BstXI CCANNNNNNTGG 1 cut(s) 3329
BstYI RGATCY 1 cut(s) 3115
Bsu15I ATCGAT 1 cut(s) 3325
Bsu36I CCTNAGG 1 cut(s) 2526
BsuI GTATCC 2 cut(s) 681, 1812
BsuTUI ATCGAT 1 cut(s) 3325
BtgI CCRYGG 1 cut(s) 290
BtrI CACGTC 1 cut(s) 3617
BtsI GCAGTG 1 cut(s) 2236
BtsIMutI CAGTG 6 cut(s) 113, 638, 1263, 2022, 2236, 2325
BveI ACCTGC 2 cut(s) 837, 1594
CaiI CAGNNNCTG 2 cut(s) 470, 3572
CfoI GCGC 2 cut(s) 1312, 3219
ClaI ATCGAT 1 cut(s) 3325
CseI GACGC 1 cut(s) 238
CspCI CAANNNNNGTGG 2 cut(s) 1698, 1733
DinI GGCGCC 1 cut(s) 3218
DraI TTTAAA 2 cut(s) 1812, 2911
DrdI GACNNNNNNGTC 1 cut(s) 808
DseDI GACNNNNNNGTC 1 cut(s) 808
EaeI YGGCCR 2 cut(s) 1219, 2755
Eam1104I CTCTTC 2 cut(s) 2139, 3039
EarI CTCTTC 2 cut(s) 2139, 3039
EciI GGCGGA 1 cut(s) 1044
Eco130I CCWWGG 6 cut(s) 290, 1790, 2073, 2585, 3005, 3137
Eco147I AGGCCT 2 cut(s) 2524, 3010
Eco31I GGTCTC 2 cut(s) 2943, 3070
Eco47I GGWCC 3 cut(s) 2531, 3404, 3497
Eco57I CTGAAG 5 cut(s) 2070, 2226, 2343, 2454, 3461
Eco81I CCTNAGG 1 cut(s) 2526
Eco88I CYCGRG 2 cut(s) 2739, 3060
Eco91I GGTNACC 1 cut(s) 3194
EcoNI CCTNNNNNAGG 3 cut(s) 2469, 2667, 3070
EcoO109I RGGNCCY 6 cut(s) 299, 2474, 2531, 3404, 3497, 3569
EcoO65I GGTNACC 1 cut(s) 3194
EcoRI GAATTC 4 cut(s) 732, 1494, 3317, 3350
EcoT14I CCWWGG 6 cut(s) 290, 1790, 2073, 2585, 3005, 3137
EcoT22I ATGCAT 1 cut(s) 1213
EgeI GGCGCC 1 cut(s) 3218
EheI GGCGCC 1 cut(s) 3218
ErhI CCWWGG 6 cut(s) 290, 1790, 2073, 2585, 3005, 3137
Esp3I CGTCTC 1 cut(s) 534
FalI AAGNNNNNCTT 4 cut(s) 1035, 1067, 2265, 2297
FaqI GGGAC 4 cut(s) 814, 1593, 1734, 2544
FauI CCCGC 2 cut(s) 37, 3381
FauNDI CATATG 3 cut(s) 142, 1762, 3525
FbaI TGATCA 3 cut(s) 490, 3703, 3880
FblI GTMKAC 1 cut(s) 81
FspBI CTAG 5 cut(s) 1440, 2586, 2706, 3006, 3044
GlaI GCGC 2 cut(s) 1311, 3218
GsaI CCCAGC 2 cut(s) 1147, 2229
GsuI CTGGAG 5 cut(s) 591, 1449, 1490, 2411, 3713
HaeII RGCGCY 2 cut(s) 1313, 3220
HapII CCGG 3 cut(s) 62, 1868, 2921
HgaI GACGC 1 cut(s) 238
HhaI GCGC 2 cut(s) 1312, 3219
Hin1I GRCGYC 1 cut(s) 3217
Hin6I GCGC 2 cut(s) 1310, 3217
HinP1I GCGC 2 cut(s) 1310, 3217
HincII GTYRAC 2 cut(s) 964, 3760
HindII GTYRAC 2 cut(s) 964, 3760
HindIII AAGCTT 1 cut(s) 2913
HpaI GTTAAC 1 cut(s) 3760
HpaII CCGG 3 cut(s) 62, 1868, 2921
HphI GGTGA 9 cut(s) 1142, 1235, 1428, 2204, 2574, 3188, 3344, 3635, 3890
Hpy188III TCNNGA 9 cut(s) 1558, 1881, 2084, 2848, 3020, 3060, 3276, 3455, 3948
Hpy99I CGWCG 1 cut(s) 3243
HpyCH4IV ACGT 6 cut(s) 527, 1282, 1606, 1645, 2135, 3616
HpySE526I ACGT 6 cut(s) 527, 1282, 1606, 1645, 2135, 3616
Hsp92I GRCGYC 1 cut(s) 3217
HspAI GCGC 2 cut(s) 1310, 3217
KasI GGCGCC 1 cut(s) 3216
KpnI GGTACC 1 cut(s) 2073
Ksp22I TGATCA 3 cut(s) 490, 3703, 3880
KspAI GTTAAC 1 cut(s) 3760
LweI GCATC 9 cut(s) 190, 1220, 1722, 2209, 2560, 2618, 3276, 3499, 3889
MaeI CTAG 5 cut(s) 1440, 2586, 2706, 3006, 3044
MaeII ACGT 6 cut(s) 527, 1282, 1606, 1645, 2135, 3616
MaeIII GTNAC 9 cut(s) 102, 187, 534, 1323, 2454, 3158, 3194, 3461, 3596
MfeI CAATTG 1 cut(s) 3189
MflI RGATCY 1 cut(s) 3115
MhlI GDGCHC 7 cut(s) 113, 155, 290, 1263, 1945, 2446, 2677
MlsI TGGCCA 2 cut(s) 1221, 2757
MluNI TGGCCA 2 cut(s) 1221, 2757
Mly113I GGCGCC 1 cut(s) 3217
MlyI GAGTC 6 cut(s) 1078, 1336, 2096, 2126, 3096, 3704
MmeI TCCRAC 3 cut(s) 644, 1555, 1756
Mox20I TGGCCA 2 cut(s) 1221, 2757
Mph1103I ATGCAT 1 cut(s) 1213
MroXI GAANNNNTTC 1 cut(s) 2939
MscI TGGCCA 2 cut(s) 1221, 2757
MseI TTAA 6 cut(s) 1811, 2174, 2910, 3170, 3654, 3759
MslI CAYNNNNRTG 3 cut(s) 279, 1644, 3180
Msp20I TGGCCA 2 cut(s) 1221, 2757
MspA1I CMGCKG 1 cut(s) 1217
MspCI CTTAAG 1 cut(s) 3653
MspI CCGG 3 cut(s) 62, 1868, 2921
MunI CAATTG 1 cut(s) 3189
Mva1269I GAATGC 5 cut(s) 1174, 1695, 2626, 3790, 3856
NarI GGCGCC 1 cut(s) 3217
NciI CCSGG 2 cut(s) 62, 1869
NcoI CCATGG 1 cut(s) 290
NdeI CATATG 3 cut(s) 142, 1762, 3525
NmuCI GTSAC 7 cut(s) 102, 187, 534, 1323, 3158, 3194, 3461
NsiI ATGCAT 1 cut(s) 1213
NspI RCATGY 5 cut(s) 410, 2543, 2845, 3539, 3566
NspV TTCGAA 1 cut(s) 2871
OliI CACNNNNGTG 1 cut(s) 279
PaeR7I CTCGAG 1 cut(s) 3060
PaqCI CACCTGC 1 cut(s) 1594
PasI CCCWGGG 1 cut(s) 1612
PceI AGGCCT 2 cut(s) 2524, 3010
PciI ACATGT 1 cut(s) 2539
PctI GAATGC 5 cut(s) 1174, 1695, 2626, 3790, 3856
PdmI GAANNNNTTC 1 cut(s) 2939
Pfl23II CGTACG 1 cut(s) 171
PflFI GACNNNGTC 1 cut(s) 3243
PflMI CCANNNNNTGG 6 cut(s) 797, 1742, 3206, 3620, 3671, 3817
PfoI TCCNGGA 1 cut(s) 673
PleI GAGTC 6 cut(s) 1078, 1336, 2095, 2125, 3095, 3703
PluTI GGCGCC 1 cut(s) 3220
PpsI GAGTC 6 cut(s) 1078, 1336, 2095, 2125, 3095, 3703
Ppu21I YACGTR 1 cut(s) 1646
PpuMI RGGWCCY 3 cut(s) 2531, 3404, 3497
PscI ACATGT 1 cut(s) 2539
PshAI GACNNNNGTC 1 cut(s) 959
PshBI ATTAAT 1 cut(s) 3170
PsiI TTATAA 1 cut(s) 2643
Psp1406I AACGTT 1 cut(s) 2135
Psp5II RGGWCCY 3 cut(s) 2531, 3404, 3497
PspEI GGTNACC 1 cut(s) 3194
PspFI CCCAGC 2 cut(s) 1143, 2225
PspLI CGTACG 1 cut(s) 171
PspPPI RGGWCCY 3 cut(s) 2531, 3404, 3497
PstNI CAGNNNCTG 2 cut(s) 470, 3572
PsuI RGATCY 1 cut(s) 3115
PsyI GACNNNGTC 1 cut(s) 3243
PvuII CAGCTG 1 cut(s) 1217
RseI CAYNNNNRTG 3 cut(s) 279, 1644, 3180
SaqAI TTAA 6 cut(s) 1811, 2174, 2910, 3170, 3654, 3759
ScaI AGTACT 5 cut(s) 53, 659, 710, 1749, 2161
SchI GAGTC 6 cut(s) 1078, 1336, 2096, 2126, 3096, 3704
SduI GDGCHC 7 cut(s) 113, 155, 290, 1263, 1945, 2446, 2677
SfaNI GCATC 9 cut(s) 190, 1220, 1722, 2209, 2560, 2618, 3276, 3499, 3889
SfcI CTRYAG 4 cut(s) 1173, 1968, 2367, 2777
SfoI GGCGCC 1 cut(s) 3218
Sfr274I CTCGAG 1 cut(s) 3060
SfuI TTCGAA 1 cut(s) 2871
SinI GGWCC 3 cut(s) 2531, 3404, 3497
SlaI CTCGAG 1 cut(s) 3060
SmiMI CAYNNNNRTG 3 cut(s) 279, 1644, 3180
SmlI CTYRAG 8 cut(s) 588, 594, 1059, 1302, 2993, 3060, 3653, 3709
SmoI CTYRAG 8 cut(s) 588, 594, 1059, 1302, 2993, 3060, 3653, 3709
SseBI AGGCCT 2 cut(s) 2524, 3010
SsiI CCGC 9 cut(s) 44, 372, 552, 1055, 1385, 1415, 2388, 3122, 3388
SspDI GGCGCC 1 cut(s) 3216
SspMI CTAG 5 cut(s) 1440, 2586, 2706, 3006, 3044
StuI AGGCCT 2 cut(s) 2524, 3010
StyI CCWWGG 6 cut(s) 290, 1790, 2073, 2585, 3005, 3137
TaiI ACGT 6 cut(s) 530, 1285, 1609, 1648, 2138, 3619
TaqI TCGA 7 cut(s) 2871, 2971, 3061, 3277, 3325, 3559, 3890
TatI WGTACW 7 cut(s) 51, 120, 657, 708, 1573, 1747, 2159
TauI GCSGC 3 cut(s) 1417, 2391, 3125
Tru1I TTAA 6 cut(s) 1811, 2174, 2910, 3170, 3654, 3759
Tru9I TTAA 6 cut(s) 1811, 2174, 2910, 3170, 3654, 3759
TscAI CASTG 6 cut(s) 113, 638, 1263, 2029, 2236, 2332
TseFI GTSAC 7 cut(s) 102, 187, 534, 1323, 3158, 3194, 3461
Tsp45I GTSAC 7 cut(s) 102, 187, 534, 1323, 3158, 3194, 3461
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 6 cut(s) 113, 638, 1263, 2029, 2236, 2332
Tth111I GACNNNGTC 1 cut(s) 3243
Van91I CCANNNNNTGG 6 cut(s) 797, 1742, 3206, 3620, 3671, 3817
Vha464I CTTAAG 1 cut(s) 3653
VneI GTGCAC 2 cut(s) 109, 1941
VpaK11BI GGWCC 3 cut(s) 2531, 3404, 3497
VspI ATTAAT 1 cut(s) 3170
XagI CCTNNNNNAGG 3 cut(s) 2469, 2667, 3070
XapI RAATTY 8 cut(s) 346, 583, 732, 1008, 1494, 1876, 3317, 3350
XceI RCATGY 5 cut(s) 410, 2543, 2845, 3539, 3566
XcmI CCANNNNNNNNNTGG 1 cut(s) 671
XhoI CTCGAG 1 cut(s) 3060
XmaJI CCTAGG 2 cut(s) 2585, 3005
XmiI GTMKAC 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 2939
XspI CTAG 5 cut(s) 1440, 2586, 2706, 3006, 3044
ZrmI AGTACT 5 cut(s) 53, 659, 710, 1749, 2161
Zsp2I ATGCAT 1 cut(s) 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.