MD11G1084500.v1.1

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002401
Physical Location & Seq
Forward (+)
7114587 .. 7122817
8231 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1084500.v1.1.491

Sequence Viewer

Length: 3753 bp
ATGGGATTTGATAACGAGTGCATATTGAATATCCAGTCTCTTGCCGGGGAGTACTTTTGTCCGGTTTGTCGTCTGCTTGTTTACCCAAATGAAGCGCTACAGTCGCAATGTACTCATCTCTACTGCAAGCCCTGTTTGACATACGTTGTGAGCACCACCCAGGCTTGCCCATATGACGGCTACTTAGTGACAGAAGCAGATGCCAAGCCACTTACTGAGTCAAATAAGGCACTCGCTGAAACCATTGGAAAAATACCAGTTCATTGCCTTTTCCACAGGAGTGGATGCACATGGCAGGGACCATTATCCGAGTGCACACCTCATTGTTCTGGATGTGCCTTTGGAAATTCCCCTGTAGTATGCAACAGGTGTGGAGTCCAAATTGTACATCGTCAAGTGCAGGAACATGGGCAAACTTGCCCTGGTGTGCAGCCAGCGCAGCAGGCACAGAGTGCTCTAGACACTTCAGCTTCTGGCACATCAGCAGCTACTGCTGATCAAACCCAGGCTGCGATTCAGACAGGAATACCTACATCTCAGGCCTTGGTTTCTCAAACTACAACTGCACCTGGATCTGATCCAAATCAGAAAGCAAACTCAAGTTCTCAATCTCAAGCGGATGTGCCGTCTGCTGACCAATGGTACCAACAGCAGCAACCATATCAACAGTACTACCAGCAGTATCCTGGATATGACCCATATCAACAGCAATATCAGAACTACTATCCATATCAACAGCCAGCGGTTCCACAATCACAGCAGGCTCAGCCACCATATGGGACTGTTCAGAATCAACCTCAGACATACTTGCAACCTCAGCCCCAAACTCAACTTTCGCTACAGCCTCCAATTTCTCAAGCTCAAGCTCAACCACGACCCCAAATTCAGCCTCCAAATGGCCAGGCTCCTATTGCGGCTCAAACTCAAAATCAGGTACAAGCCAACCAACAGCAGCAAGTCCACCCTACAGTGCAGACATACCCAGCAGCTCATGGGCAGCAACAGCCATATTACCAAGCTCCACCCCATTCACAACCTCATCCTCAACAGGTGCAAGTGCCTCCATATCAGCAGCCCCAAATTCAGCAACATACCCAGGCCCAGCTCCACCCACAGCACCATTCCCATTCTCAGTCTCAACCTCAGCCACAGGCACAAGCTCAACACCAACCCCAACTTCACCCTTCTCAGCCCATGAATGCTGCTGTCCAGCCTCAGGCACATCCATCATCTCATGCTGTGTCTGGAAATAACTCGTATCCCCCACCTCACCTTTACCAGCCAGTGCAGTCAGGAGCCCCACAACAACACACCATGCACGTGCAATCTCAAGGCATGCCTCACTCTCAGTTACAGACTCATGTTCAAGTACAGGGTCAGCTCCCTCAACAACCCCCACTTGTGCGGCCACCCTCGTCTCTTACAACAATTCCAAACCAGCAGCAGCCAGCTTTGTTGCCTTCACCTGGTCAAGTCCAAAACATCAAACCTGCACAACAGCAGCCAGTTCCCTCTTATGCTCAGCAACCTGGAAATTTGGTCTACCAGCGCCCGCTTATGCAGGCAATTCAACAACCGATGCTTCAGCAATATTTCCACCATCAGGCATACGTACAGCAGCAACCATCTACACAGTTACGTCCGCAGGGCCAATCTCATTCATTCCCTCAACATAATCATGCCTCTATGCAGTCTCAGCAGAACATTGCATTGTCTCAGGGCATTCAACATACTCAGTCTAATCTTGTAGGAAGGCCTATGATGCCAAGTCATGCAGTACAACCTCAGCCCTACGCACAAACTGCTGGGCAAGTGAGGCCAATGCATCCTTCTGTAAACCATCCATCTACAGATCAGAATAATGTTGTCAGAACAAACAACCCAGTGCAATCTGGAGCAAACTCGAGGCCAACTATGTCTGAAAGGCAAACTGAGAAAGAATCTGAGTCATCAAATCAGAAGGTTGCAAATGGCGATGAACTTAAATATGTCAATTCCGAGATGGGTATGAAGTCCGCTGATGATGAGCATAAACCTAGTGGTGAAGATAAACCTAATCAGGGGGATACATCTTCTAAGGAGATTCCAGAATCTAGGGGCTTGCTGGGGGCAGATCCAGATTTCCATGCACTTGAAAATGGAGAGTTTGTAGGTAACCCAACATTGAAGAAAGAAGGTGTGGATAGCACTATGGAGCACTCAAGTAACGGTAAGTTGGGTGAAGCTGTAGCTGAGGTTGCAAAAGAAATCTTATCGGAAGAAGCTCAACTTCGTGAAGAACAGGGTCAAAGGTTGCAGAAGGATGAGGGTTCGCAAGCTGTATCTACTTCAGCTCCAACTGGTCAGGTACAAGCTGGTGGCTCTGCACAACCCTCACATCCTGTACCAATACATCATGGACCTACTATACTCCCCCAAAGGCCTGGTGCACCCCCTCCAGGACCTCCACATCATACACAGGGGCCTGGGCACCCCTGGACTCATTTAAGACCTCAGCGACCTTCACATGTACCCGGACAACCTTTTCATCCATCCGAGCATTTGCAGCTACCTGGTGCCAACCCAGGTTTTGGACCATCTTCTGGAAGGGGGGGAGGTCATTATGGTCCTCAAGGTGTACTACCTCCTTCCCATACAGGGGCTCCCAGGATGCAAGGTGAACCTGTTGGAGGCCCTCCATTTGGTGGAATGATGGCAAGAGCAGCACCATATGGCCCTGACGGTCCTAGGGGTCACCAGCGGCCTGCCTTTCAAATTGATCAGGGAGCAATTGGACAGCCATCTGGAATCCCCCCAAATATGTTGAGAATGAATGGAACTCCAGGCCTTGACCCCTCATCAACTCATGGGTTGAGGGATGAAAGGTTCAAGGCTTTTCCAGACGAGCGATTGAATCCCTTCCCGGTAGATCCAACTTTTCGTGGTATTGACCGGGTAGAGTTTGAAGATGATCTCAAGCGATTCCCTAGGCCTTCGTATCTGGATTCTGACCCTGTTTCAAAATTTGGGAATTCTTCATCAAGGCCATTTGATAGGGGACCTCATGGGCCCAAGTATGATATTGGTCAGAATACAGATCCTGTTGCTGGAGATACTGGAAGAATGGAGCCTTCTCGCAGTCATCCAGATTTTGTTGGACGACACCTTATGGATGGTTTGGCTCCCCGAAGCCCAGTTAGAGATTACCCTGGCATCCCATCTCATGGGTTTAGAGGCTTTGGCCCTGATGATTTTGATAGAAGGGAATTTCATCGGTTTGGTGATCCACATGGAAATTCATTCCGCGAAGGTAGGCTTTCTAATTTTTCTAGTCATTTTCGTCGGGGTGAGTTTGAGGGCCCTGGTAATATGCAAACTGTTGATGGGCACCCTGGTCATCCTCGGAGGGGAGATCATTTGGGTCCTCAGAACTTGCATAGTCATTTGCATTTGCGAGAACCTATGGGTTTTGGTGATCGTCATTCACGCCTAGGAGATATGACTGGGCCTGGGAACTTTGAATCATTTCGAGGCAACAGGCCAAGTCATCCACGTCTTGGTGAACCTGGATTTAGGAGCAGTTTTTCACTTCAAAGATTTCCAACTGATGGAGCTTACACAGGAGATCTAGAGTCTTTTGATCACTCAAGGAAAAGGAAACCAGCTAGTATGGGATGGTGCCGGATATGTAAAGTTGATTGTGAAACAGTTGAAGGCTTGGACTTGCACTCACAAACAAGGGAACACCAGAAGATGGCGATGGAAATGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000793 GO:0000794 GO:0001701 GO:0001756 GO:0001932 GO:0002020 GO:0002791 GO:0002793 GO:0003002 GO:0003007 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003300 GO:0003674 GO:0003779 GO:0003824 GO:0004672 GO:0004674 GO:0004713 GO:0005198 GO:0005200 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005856 GO:0005859 GO:0005865 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006936 GO:0006941 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0007399 GO:0007417 GO:0007420 GO:0007507 GO:0007512 GO:0007517 GO:0008015 GO:0008092 GO:0008150 GO:0008152 GO:0008307 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009888 GO:0009893 GO:0009952 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010604 GO:0010628 GO:0010737 GO:0010927 GO:0014706 GO:0014866 GO:0014896 GO:0014897 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016459 GO:0016460 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0021591 GO:0022607 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030036 GO:0030154 GO:0030239 GO:0030240 GO:0030241 GO:0030506 GO:0031032 GO:0031033 GO:0031034 GO:0031323 GO:0031399 GO:0031430 GO:0031433 GO:0031672 GO:0031674 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032989 GO:0032991 GO:0033058 GO:0034622 GO:0035051 GO:0035265 GO:0035282 GO:0035556 GO:0035994 GO:0035995 GO:0036211 GO:0036379 GO:0040007 GO:0040011 GO:0042221 GO:0042325 GO:0042692 GO:0042802 GO:0042805 GO:0043009 GO:0043056 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043292 GO:0043412 GO:0043549 GO:0043621 GO:0043933 GO:0044057 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0044877 GO:0045214 GO:0045859 GO:0046872 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048589 GO:0048644 GO:0048646 GO:0048729 GO:0048731 GO:0048738 GO:0048739 GO:0048747 GO:0048769 GO:0048856 GO:0048869 GO:0050708 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050982 GO:0051015 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051146 GO:0051171 GO:0051174 GO:0051222 GO:0051223 GO:0051239 GO:0051246 GO:0051338 GO:0051371 GO:0051393 GO:0051592 GO:0051606 GO:0051716 GO:0055001 GO:0055002 GO:0055003 GO:0055006 GO:0055007 GO:0055008 GO:0055013 GO:0060047 GO:0060048 GO:0060255 GO:0060322 GO:0060415 GO:0060419 GO:0060429 GO:0060537 GO:0061053 GO:0061061 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070925 GO:0071688 GO:0071704 GO:0071840 GO:0072359 GO:0080090 GO:0090087 GO:0090257 GO:0097435 GO:0097493 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901077 GO:1901564 GO:1901897 GO:1903530 GO:1903532 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1251

Amino Acids

137.06

Weight (kDa)

6.65

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1498
Acc65I GGTACC 1 cut(s) 642
AccB1I GGYRCC 5 cut(s) 642, 2469, 2555, 3366, 3657
AccB7I CCANNNNNTGG 8 cut(s) 776, 2570, 2582, 2684, 3203, 3536, 3587, 3733
AccI GTMKAC 1 cut(s) 1542
AccII CGCG 1 cut(s) 3285
AciI CCGC 9 cut(s) 617, 743, 914, 1405, 1553, 1643, 2016, 2740, 3283
AclWI GGATC 6 cut(s) 572, 580, 2108, 2903, 3071, 3257
AcoI YGGCCR 2 cut(s) 898, 1406
AcsI RAATTY 8 cut(s) 346, 882, 1080, 1534, 3002, 3010, 3245, 3274
AcuI CTGAAG 3 cut(s) 450, 1568, 2313
AcvI CACGTG 1 cut(s) 1321
AdeI CACNNNGTG 1 cut(s) 452
AfeI AGCGCT 1 cut(s) 96
AflIII ACRYGT 1 cut(s) 2506
AjiI CACGTC 1 cut(s) 3533
AjuI GAANNNNNNNTTGG 4 cut(s) 1161, 1193, 1813, 1845
AleI CACNNNNGTG 1 cut(s) 279
AloI GAACNNNNNNTCC 2 cut(s) 2849, 2881
Alw21I GWGCWC 5 cut(s) 155, 317, 457, 2199, 2431
Alw26I GTCTC 5 cut(s) 42, 1140, 1422, 1698, 1719
Alw44I GTGCAC 2 cut(s) 313, 2427
AlwI GGATC 6 cut(s) 572, 580, 2108, 2903, 3071, 3257
AlwNI CAGNNNCTG 3 cut(s) 473, 491, 3080
Ama87I CYCGRG 1 cut(s) 1903
Aor51HI AGCGCT 1 cut(s) 96
ApaI GGGCCC 2 cut(s) 3051, 3341
ApaLI GTGCAC 2 cut(s) 313, 2427
ApoI RAATTY 8 cut(s) 346, 882, 1080, 1534, 3002, 3010, 3245, 3274
Asp700I GAANNNNTTC 2 cut(s) 2897, 3504
Asp718I GGTACC 1 cut(s) 642
AspA2I CCTAGG 3 cut(s) 2726, 2966, 3469
AspLEI GCGC 3 cut(s) 97, 439, 1551
AsuC2I CCSGG 4 cut(s) 46, 2514, 2903, 2933
AvaI CYCGRG 1 cut(s) 1903
AvaII GGWCC 8 cut(s) 299, 2399, 2441, 2573, 2606, 2723, 3038, 3401
AvrII CCTAGG 3 cut(s) 2726, 2966, 3469
AxyI CCTNAGG 1 cut(s) 1215
BaeGI GKGCMC 6 cut(s) 317, 2431, 2472, 3051, 3341, 3369
BalI TGGCCA 1 cut(s) 900
BanI GGYRCC 5 cut(s) 642, 2469, 2555, 3366, 3657
BanII GRGCYC 4 cut(s) 1300, 2644, 3051, 3341
BbrPI CACGTG 1 cut(s) 1321
Bbv12I GWGCWC 5 cut(s) 155, 317, 457, 2199, 2431
BbvCI CCTCAGC 5 cut(s) 816, 1143, 1785, 2232, 2493
BceAI ACGGC 2 cut(s) 193, 610
BciVI GTATCC 3 cut(s) 693, 1269, 2059
BclI TGATCA 3 cut(s) 496, 2758, 3619
BcnI CCSGG 4 cut(s) 46, 2514, 2903, 2933
BcoDI GTCTC 5 cut(s) 42, 1140, 1422, 1698, 1719
BfaI CTAG 9 cut(s) 458, 2037, 2094, 2727, 2967, 3309, 3470, 3608, 3645
BfmI CTRYAG 6 cut(s) 98, 354, 839, 966, 1848, 2226
BfoI RGCGCY 2 cut(s) 98, 1552
BfuAI ACCTGC 1 cut(s) 1498
BfuI GTATCC 3 cut(s) 693, 1269, 2059
BglII AGATCT 1 cut(s) 3604
BlnI CCTAGG 3 cut(s) 2726, 2966, 3469
BlpI GCTNAGC 2 cut(s) 765, 1521
BmcAI AGTACT 2 cut(s) 53, 671
Bme18I GGWCC 8 cut(s) 299, 2399, 2441, 2573, 2606, 2723, 3038, 3401
BmeT110I CYCGRG 1 cut(s) 1903
BmgBI CACGTC 1 cut(s) 3533
BmrI ACTGGG 3 cut(s) 1877, 3167, 3492
BmsI GCATC 7 cut(s) 190, 275, 1569, 1752, 1834, 2640, 3201
BmuI ACTGGG 3 cut(s) 1877, 3167, 3492
BpmI CTGGAG 4 cut(s) 1914, 2421, 2805, 3108
Bpu10I CCTNAGC 5 cut(s) 816, 1143, 1785, 2232, 2493
Bpu1102I GCTNAGC 2 cut(s) 765, 1521
BpuEI CTTGAG 9 cut(s) 583, 597, 840, 846, 1314, 2185, 2595, 2939, 3610
BpuMI CCSGG 4 cut(s) 46, 2514, 2903, 2933
BsaAI YACGTR 2 cut(s) 1321, 1612
BsaBI GATNNNNATC 1 cut(s) 582
BsaWI WCCGGW 1 cut(s) 61
BsaXI ACNNNNNCTCC 6 cut(s) 2133, 2163, 2317, 2347, 2626, 2656
Bse1I ACTGG 9 cut(s) 34, 257, 1283, 1505, 1883, 2344, 3100, 3173, 3487
Bse21I CCTNAGG 1 cut(s) 1215
Bse3DI GCAATG 3 cut(s) 113, 262, 1704
Bse8I GATNNNNATC 1 cut(s) 582
BseJI GATNNNNATC 1 cut(s) 582
BseMI GCAATG 3 cut(s) 113, 262, 1704
BseNI ACTGG 9 cut(s) 34, 257, 1283, 1505, 1883, 2344, 3100, 3173, 3487
BseSI GKGCMC 6 cut(s) 317, 2431, 2472, 3051, 3341, 3369
BseYI CCCAGC 4 cut(s) 982, 1101, 1805, 2104
BsgI GTGCAG 7 cut(s) 419, 449, 549, 992, 1307, 1476, 2349
Bsh1236I CGCG 1 cut(s) 3285
BshNI GGYRCC 5 cut(s) 642, 2469, 2555, 3366, 3657
BsiHKAI GWGCWC 5 cut(s) 155, 317, 457, 2199, 2431
BsiHKCI CYCGRG 1 cut(s) 1903
BsiSI CCGG 6 cut(s) 45, 62, 2514, 2903, 2932, 3661
BslFI GGGAC 3 cut(s) 312, 793, 3051
BsmAI GTCTC 5 cut(s) 42, 1140, 1422, 1698, 1719
BsmBI CGTCTC 1 cut(s) 1422
BsmFI GGGAC 3 cut(s) 312, 793, 3051
BsmI GAATGC 2 cut(s) 1204, 1722
BsoBI CYCGRG 1 cut(s) 1903
Bsp120I GGGCCC 2 cut(s) 3047, 3337
Bsp1407I TGTACA 1 cut(s) 385
Bsp1720I GCTNAGC 2 cut(s) 765, 1521
BspACI CCGC 9 cut(s) 617, 743, 914, 1405, 1553, 1643, 2016, 2740, 3283
BspFNI CGCG 1 cut(s) 3285
BspMI ACCTGC 1 cut(s) 1498
BspPI GGATC 6 cut(s) 572, 580, 2108, 2903, 3071, 3257
BspT107I GGYRCC 5 cut(s) 642, 2469, 2555, 3366, 3657
BsrDI GCAATG 3 cut(s) 113, 262, 1704
BsrGI TGTACA 1 cut(s) 385
BsrI ACTGG 9 cut(s) 34, 257, 1283, 1505, 1883, 2344, 3100, 3173, 3487
BssT1I CCWWGG 4 cut(s) 543, 2726, 2966, 3469
Bst4CI ACNGT 9 cut(s) 102, 669, 784, 970, 1635, 2210, 2723, 3358, 3688
BstAPI GCANNNNNTGC 3 cut(s) 452, 491, 1802
BstAUI TGTACA 1 cut(s) 385
BstBAI YACGTR 2 cut(s) 1321, 1612
BstEII GGTNACC 2 cut(s) 2153, 2732
BstENI CCTNNNNNAGG 1 cut(s) 2667
BstFNI CGCG 1 cut(s) 3285
BstH2I RGCGCY 2 cut(s) 98, 1552
BstHHI GCGC 3 cut(s) 97, 439, 1551
BstMAI GTCTC 5 cut(s) 42, 1140, 1422, 1698, 1719
BstNSI RCATGY 2 cut(s) 1339, 2510
BstPI GGTNACC 2 cut(s) 2153, 2732
BstSFI CTRYAG 6 cut(s) 98, 354, 839, 966, 1848, 2226
BstSLI GKGCMC 6 cut(s) 317, 2431, 2472, 3051, 3341, 3369
BstSNI TACGTA 1 cut(s) 1612
BstUI CGCG 1 cut(s) 3285
BstX2I RGATCY 5 cut(s) 572, 2113, 2908, 3076, 3604
BstXI CCANNNNNNTGG 2 cut(s) 281, 2423
BstYI RGATCY 5 cut(s) 572, 2113, 2908, 3076, 3604
Bsu36I CCTNAGG 1 cut(s) 1215
BsuI GTATCC 3 cut(s) 693, 1269, 2059
BtgZI GCGATG 1 cut(s) 1989
BtrI CACGTC 1 cut(s) 3533
BtsIMutI CAGTG 3 cut(s) 975, 1290, 1890
BveI ACCTGC 1 cut(s) 1498
CaiI CAGNNNCTG 3 cut(s) 473, 491, 3080
CfoI GCGC 3 cut(s) 97, 439, 1551
CsiI ACCWGGT 2 cut(s) 1465, 2551
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
DraIII CACNNNGTG 1 cut(s) 452
EaeI YGGCCR 2 cut(s) 898, 1406
Eco105I TACGTA 1 cut(s) 1612
Eco130I CCWWGG 4 cut(s) 543, 2726, 2966, 3469
Eco147I AGGCCT 5 cut(s) 542, 1756, 2422, 2826, 2971
Eco24I GRGCYC 4 cut(s) 1300, 2644, 3051, 3341
Eco47I GGWCC 8 cut(s) 299, 2399, 2441, 2573, 2606, 2723, 3038, 3401
Eco47III AGCGCT 1 cut(s) 96
Eco57I CTGAAG 3 cut(s) 450, 1568, 2313
Eco72I CACGTG 1 cut(s) 1321
Eco81I CCTNAGG 1 cut(s) 1215
Eco88I CYCGRG 1 cut(s) 1903
Eco91I GGTNACC 2 cut(s) 2153, 2732
EcoNI CCTNNNNNAGG 1 cut(s) 2667
EcoO109I RGGNCCY 7 cut(s) 2441, 2462, 2672, 3038, 3337, 3338, 3401
EcoO65I GGTNACC 2 cut(s) 2153, 2732
EcoRI GAATTC 1 cut(s) 3010
EcoT14I CCWWGG 4 cut(s) 543, 2726, 2966, 3469
EcoT22I ATGCAT 1 cut(s) 1827
EcoT38I GRGCYC 4 cut(s) 1300, 2644, 3051, 3341
ErhI CCWWGG 4 cut(s) 543, 2726, 2966, 3469
Esp3I CGTCTC 1 cut(s) 1422
FalI AAGNNNNNCTT 4 cut(s) 2253, 2285, 3279, 3311
FaqI GGGAC 3 cut(s) 312, 793, 3051
FauI CCCGC 1 cut(s) 1560
FauNDI CATATG 3 cut(s) 172, 775, 2710
FbaI TGATCA 3 cut(s) 496, 2758, 3619
FblI GTMKAC 1 cut(s) 1542
FriOI GRGCYC 4 cut(s) 1300, 2644, 3051, 3341
FspBI CTAG 9 cut(s) 458, 2037, 2094, 2727, 2967, 3309, 3470, 3608, 3645
GlaI GCGC 3 cut(s) 96, 438, 1550
GsaI CCCAGC 4 cut(s) 986, 1105, 1809, 2108
GsuI CTGGAG 4 cut(s) 1914, 2421, 2805, 3108
HaeII RGCGCY 2 cut(s) 98, 1552
HapII CCGG 6 cut(s) 45, 62, 2514, 2903, 2932, 3661
HhaI GCGC 3 cut(s) 97, 439, 1551
Hin6I GCGC 3 cut(s) 95, 437, 1549
HinP1I GCGC 3 cut(s) 95, 437, 1549
HpaII CCGG 6 cut(s) 45, 62, 2514, 2903, 2932, 3661
Hpy166II GTNNAC 9 cut(s) 82, 315, 961, 1543, 1837, 2429, 2618, 2660, 3542
Hpy8I GTNNAC 9 cut(s) 82, 315, 961, 1543, 1837, 2429, 2618, 2660, 3542
Hpy99I CGWCG 1 cut(s) 3324
HpyCH4III ACNGT 9 cut(s) 102, 669, 784, 970, 1635, 2210, 2723, 3358, 3688
HpyCH4IV ACGT 5 cut(s) 144, 1320, 1611, 1639, 3532
HpySE526I ACGT 5 cut(s) 144, 1320, 1611, 1639, 3532
HspAI GCGC 3 cut(s) 95, 437, 1549
KpnI GGTACC 1 cut(s) 646
Ksp22I TGATCA 3 cut(s) 496, 2758, 3619
LweI GCATC 7 cut(s) 190, 275, 1569, 1752, 1834, 2640, 3201
MabI ACCWGGT 2 cut(s) 1465, 2551
MaeI CTAG 9 cut(s) 458, 2037, 2094, 2727, 2967, 3309, 3470, 3608, 3645
MaeII ACGT 5 cut(s) 144, 1320, 1611, 1639, 3532
MaeIII GTNAC 6 cut(s) 187, 1350, 1635, 2153, 2204, 2732
MfeI CAATTG 1 cut(s) 2769
MflI RGATCY 5 cut(s) 572, 2113, 2908, 3076, 3604
MlsI TGGCCA 1 cut(s) 900
MluNI TGGCCA 1 cut(s) 900
MlyI GAGTC 6 cut(s) 227, 384, 1351, 1955, 2473, 3620
MmeI TCCRAC 5 cut(s) 2360, 2647, 2936, 3115, 3605
Mox20I TGGCCA 1 cut(s) 900
Mph1103I ATGCAT 1 cut(s) 1827
MroXI GAANNNNTTC 2 cut(s) 2897, 3504
MscI TGGCCA 1 cut(s) 900
MseI TTAA 2 cut(s) 1983, 2486
MslI CAYNNNNRTG 3 cut(s) 279, 1319, 1677
Msp20I TGGCCA 1 cut(s) 900
MspA1I CMGCKG 3 cut(s) 743, 2018, 2740
MspI CCGG 6 cut(s) 45, 62, 2514, 2903, 2932, 3661
MunI CAATTG 1 cut(s) 2769
Mva1269I GAATGC 2 cut(s) 1204, 1722
MvnI CGCG 1 cut(s) 3285
NciI CCSGG 4 cut(s) 46, 2514, 2903, 2933
NdeI CATATG 3 cut(s) 172, 775, 2710
NmuCI GTSAC 2 cut(s) 187, 2732
NsiI ATGCAT 1 cut(s) 1827
NspI RCATGY 2 cut(s) 1339, 2510
OliI CACNNNNGTG 1 cut(s) 279
PaeI GCATGC 1 cut(s) 1339
PaeR7I CTCGAG 1 cut(s) 1903
PceI AGGCCT 5 cut(s) 542, 1756, 2422, 2826, 2971
PciI ACATGT 1 cut(s) 2506
PctI GAATGC 2 cut(s) 1204, 1722
PdmI GAANNNNTTC 2 cut(s) 2897, 3504
PflMI CCANNNNNTGG 8 cut(s) 776, 2570, 2582, 2684, 3203, 3536, 3587, 3733
PfoI TCCNGGA 2 cut(s) 685, 2437
PleI GAGTC 6 cut(s) 226, 383, 1351, 1954, 2473, 3619
PmaCI CACGTG 1 cut(s) 1321
PmlI CACGTG 1 cut(s) 1321
PpsI GAGTC 6 cut(s) 226, 383, 1351, 1954, 2473, 3619
Ppu21I YACGTR 2 cut(s) 1321, 1612
PpuMI RGGWCCY 3 cut(s) 2441, 3038, 3401
PscI ACATGT 1 cut(s) 2506
Psp5II RGGWCCY 3 cut(s) 2441, 3038, 3401
PspCI CACGTG 1 cut(s) 1321
PspEI GGTNACC 2 cut(s) 2153, 2732
PspFI CCCAGC 4 cut(s) 982, 1101, 1805, 2104
PspOMI GGGCCC 2 cut(s) 3047, 3337
PspPPI RGGWCCY 3 cut(s) 2441, 3038, 3401
PspXI VCTCGAGB 1 cut(s) 1903
PstNI CAGNNNCTG 3 cut(s) 473, 491, 3080
PsuI RGATCY 5 cut(s) 572, 2113, 2908, 3076, 3604
RseI CAYNNNNRTG 3 cut(s) 279, 1319, 1677
SaqAI TTAA 2 cut(s) 1983, 2486
ScaI AGTACT 2 cut(s) 53, 671
SchI GAGTC 6 cut(s) 227, 384, 1351, 1955, 2473, 3620
SexAI ACCWGGT 2 cut(s) 1465, 2551
SfaNI GCATC 7 cut(s) 190, 275, 1569, 1752, 1834, 2640, 3201
SfcI CTRYAG 6 cut(s) 98, 354, 839, 966, 1848, 2226
Sfr274I CTCGAG 1 cut(s) 1903
SinI GGWCC 8 cut(s) 299, 2399, 2441, 2573, 2606, 2723, 3038, 3401
SlaI CTCGAG 1 cut(s) 1903
SmiMI CAYNNNNRTG 3 cut(s) 279, 1319, 1677
SnaBI TACGTA 1 cut(s) 1612
SphI GCATGC 1 cut(s) 1339
SseBI AGGCCT 5 cut(s) 542, 1756, 2422, 2826, 2971
SsiI CCGC 9 cut(s) 617, 743, 914, 1405, 1553, 1643, 2016, 2740, 3283
SspI AATATT 1 cut(s) 1592
SspMI CTAG 9 cut(s) 458, 2037, 2094, 2727, 2967, 3309, 3470, 3608, 3645
StuI AGGCCT 5 cut(s) 542, 1756, 2422, 2826, 2971
StyI CCWWGG 4 cut(s) 543, 2726, 2966, 3469
TaaI ACNGT 9 cut(s) 102, 669, 784, 970, 1635, 2210, 2723, 3358, 3688
TaiI ACGT 5 cut(s) 147, 1323, 1614, 1642, 3535
TaqI TCGA 2 cut(s) 1904, 3508
TatI WGTACW 7 cut(s) 51, 110, 385, 669, 1369, 1777, 2617
TauI GCSGC 3 cut(s) 917, 1408, 2743
Tru1I TTAA 2 cut(s) 1983, 2486
Tru9I TTAA 2 cut(s) 1983, 2486
TscAI CASTG 3 cut(s) 975, 1290, 1890
TseFI GTSAC 2 cut(s) 187, 2732
Tsp45I GTSAC 2 cut(s) 187, 2732
TspRI CASTG 3 cut(s) 975, 1290, 1890
Van91I CCANNNNNTGG 8 cut(s) 776, 2570, 2582, 2684, 3203, 3536, 3587, 3733
VneI GTGCAC 2 cut(s) 313, 2427
VpaK11BI GGWCC 8 cut(s) 299, 2399, 2441, 2573, 2606, 2723, 3038, 3401
XagI CCTNNNNNAGG 1 cut(s) 2667
XapI RAATTY 8 cut(s) 346, 882, 1080, 1534, 3002, 3010, 3245, 3274
XbaI TCTAGA 2 cut(s) 457, 3607
XceI RCATGY 2 cut(s) 1339, 2510
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XhoI CTCGAG 1 cut(s) 1903
XmaJI CCTAGG 3 cut(s) 2726, 2966, 3469
XmiI GTMKAC 1 cut(s) 1542
XmnI GAANNNNTTC 2 cut(s) 2897, 3504
XspI CTAG 9 cut(s) 458, 2037, 2094, 2727, 2967, 3309, 3470, 3608, 3645
ZrmI AGTACT 2 cut(s) 53, 671
Zsp2I ATGCAT 1 cut(s) 1827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.