Rorug05G0384500

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002401
Physical Location & Seq
Forward (+)
52176276 .. 52179715
3440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0384500.1

Sequence Viewer

Length: 1479 bp
ATGGCCGAGTCGACTCAGCTCCAGCTTCAACTTGAGCAAGTCGCGACGATTCTTGGCCCCGACCCCCTCGCCTCTTTCAAAACCCTAATCTCCTACCTCCTCTCCCCCTCCTATTTTGAAAGCCTAATCTCCTCCTCCCTCTTCTCCTCCAATTCCGAGCAGCGATCCCGGGCCGAGGTCGTCTATAACCTCTGCAAAAAGTACGATCCCGACTCGCTCTCCCTCACACTCGCTCACCTCCTCCAATTCTCGCCGGCGCCGGACTCCCGATTTATCTCCGCCGTCCTCCTCCGCAATCAAATCCGCCTCTGGCCAAGCCTCTCGGAGAACACAAAATCCACGATCAAATCCGCTCTATTGTTCTCCATTCAACGACAGGACAACACGAAATTGATTTCAGGCAACCTCTGCGACGCCGTTTCTGCGCTCGCCGCCGGGATCTTGCCGGAAAACGGCTGGCCGGAGCTCTTGCCCTTTCTGTTCGCATCCGTTTCCGCGGATTCGTTGCCGCCGATACTTCAGGAATCGGCAGCGTTCTTGATATTCGCGCAGCTCTCGCCGCACTTATTGCCGTATATAAACGAATTGCGCGCGGTCTTCTTGTCCTGCTTGAGCTCCTCGTCCAGGTCAAACGACGTTAAAGTAGCTGCGTTTAATGCGGTGGTCAATTTCATTCGGTGTTTGCCCAGCTCTGAAGATCCGGATATGTTTCACGACGTCTTGATAGAAATGATGAGAACCGTGATGGGGGAATTGAACAAAAAGAACGAGGCCACGGCGCAGGAGGCGATCAAGTTGTTCATTGAATTGGCCGGGACCCATCCGACATTGCTCAGCCGCAGGGGGCAGATCGTCCGAGCTATGCTGCAGATTGCTGAAGCCATAGAAGTGTTGGAACAAGGCACGAGGCACTTGGCCATAGAGTTTGTGATCACTTTGGCCGAGGCAGGAGAGCAGGCGCCATGGATAATGAGGAATTCAGTGCAGTTTGTTGGTCTGTTGTTTTCCATTTTGATGAGGATGGTTTCGGATGTTGAGGATGATCCCCTGTGGCATAAGGCTGAGACTGATGATGAGTATGCGGGTGTAAGTGCTGATTACCGTGTTGGGAATGAGTGTTTGCATAGGCTTGCCATTGCGTTGGGCGGCAATGACATTGTTCCTGTTGCGTTGAAGGAGTTACCTGCCTGTTTTGCTTCCAATGAGTGGAAGAAGCACAATGCTGCACTGGTTGCCCTTGCTCAAATTTCTGAGGGTTGTTCAAAGGTAATGATAAAAGATTTGGAGCAAGTGGTGGCAATGGTTTTGAACTCCTTTGAACATTCACATATTCGGGTAAGGTGGTCAGCGATTAATGCAGTTGGCCAGTTGTCTACTTATTTGGCCCCAGACCTGCAAGTTCAATATCATCAACAGGTGTTTTCTGCACTGAATGCCACTATATGTGGTTTGCAGAATCGTCGTCTGCTGGAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000793 GO:0000794 GO:0001701 GO:0001756 GO:0001932 GO:0002020 GO:0002791 GO:0002793 GO:0003002 GO:0003007 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003300 GO:0003674 GO:0003779 GO:0003824 GO:0004672 GO:0004674 GO:0004713 GO:0005198 GO:0005200 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005856 GO:0005859 GO:0005865 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006936 GO:0006941 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0007399 GO:0007417 GO:0007420 GO:0007507 GO:0007512 GO:0007517 GO:0008015 GO:0008092 GO:0008150 GO:0008152 GO:0008307 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009888 GO:0009893 GO:0009952 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010604 GO:0010628 GO:0010737 GO:0010927 GO:0014706 GO:0014866 GO:0014896 GO:0014897 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016459 GO:0016460 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0021591 GO:0022607 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030036 GO:0030154 GO:0030239 GO:0030240 GO:0030241 GO:0030506 GO:0031032 GO:0031033 GO:0031034 GO:0031323 GO:0031399 GO:0031430 GO:0031433 GO:0031672 GO:0031674 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032989 GO:0032991 GO:0033058 GO:0034622 GO:0035051 GO:0035265 GO:0035282 GO:0035556 GO:0035994 GO:0035995 GO:0036211 GO:0036379 GO:0040007 GO:0040011 GO:0042221 GO:0042325 GO:0042692 GO:0042802 GO:0042805 GO:0043009 GO:0043056 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043292 GO:0043412 GO:0043549 GO:0043621 GO:0043933 GO:0044057 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0044877 GO:0045214 GO:0045859 GO:0046872 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048589 GO:0048644 GO:0048646 GO:0048729 GO:0048731 GO:0048738 GO:0048739 GO:0048747 GO:0048769 GO:0048856 GO:0048869 GO:0050708 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050982 GO:0051015 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051146 GO:0051171 GO:0051174 GO:0051222 GO:0051223 GO:0051239 GO:0051246 GO:0051338 GO:0051371 GO:0051393 GO:0051592 GO:0051606 GO:0051716 GO:0055001 GO:0055002 GO:0055003 GO:0055006 GO:0055007 GO:0055008 GO:0055013 GO:0060047 GO:0060048 GO:0060255 GO:0060322 GO:0060415 GO:0060419 GO:0060429 GO:0060537 GO:0061053 GO:0061061 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070925 GO:0071688 GO:0071704 GO:0071840 GO:0072359 GO:0080090 GO:0090087 GO:0090257 GO:0097435 GO:0097493 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901077 GO:1901564 GO:1901897 GO:1903530 GO:1903532 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

492

Amino Acids

54.38

Weight (kDa)

5.31

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_IPO5 PF25780 135 - 280 2.6e-16 IPO5-like, TPR repeats
Importin_rep_4 PF18808 298 - 388 1.7e-14 Importin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 720
Acc36I ACCTGC 2 cut(s) 1192, 1401
AccB1I GGYRCC 2 cut(s) 256, 958
AccB7I CCANNNNNTGG 1 cut(s) 1206
AccBSI CCGCTC 1 cut(s) 353
AccI GTMKAC 2 cut(s) 11, 1373
AccII CGCG 5 cut(s) 44, 497, 548, 591, 593
AccIII TCCGGA 1 cut(s) 700
AclWI GGATC 5 cut(s) 159, 200, 446, 692, 1037
AcoI YGGCCR 7 cut(s) 3, 311, 458, 810, 915, 939, 1363
AcsI RAATTY 2 cut(s) 976, 1245
AcuI CTGAAG 3 cut(s) 503, 714, 897
AcyI GRCGYC 4 cut(s) 257, 414, 717, 959
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 5 cut(s) 175, 452, 624, 747, 1206
AjnI CCWGG 1 cut(s) 623
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 8 cut(s) 19, 25, 466, 553, 615, 647, 690, 860
AluI AGCT 8 cut(s) 19, 25, 466, 553, 615, 647, 690, 860
Alw21I GWGCWC 2 cut(s) 468, 617
Alw26I GTCTC 1 cut(s) 1058
AlwI GGATC 5 cut(s) 159, 200, 446, 692, 1037
Ama87I CYCGRG 1 cut(s) 168
Aor13HI TCCGGA 1 cut(s) 700
ApeKI GCWGC 6 cut(s) 160, 530, 550, 647, 865, 1223
ApoI RAATTY 2 cut(s) 976, 1245
AseI ATTAAT 1 cut(s) 1353
AspLEI GCGC 7 cut(s) 259, 427, 550, 591, 593, 781, 961
AspS9I GGNCC 4 cut(s) 56, 171, 816, 1384
AsuC2I CCSGG 4 cut(s) 169, 170, 436, 814
AsuHPI GGTGA 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 1 cut(s) 816
BalI TGGCCA 3 cut(s) 313, 917, 1365
BanI GGYRCC 2 cut(s) 256, 958
BanII GRGCYC 2 cut(s) 468, 617
BauI CACGAG 1 cut(s) 904
BbsI GAAGAC 1 cut(s) 589
Bbv12I GWGCWC 2 cut(s) 468, 617
BbvI GCAGC 6 cut(s) 172, 542, 562, 634, 852, 1210
BccI CCATC 3 cut(s) 739, 828, 1015
BceAI ACGGC 5 cut(s) 266, 401, 469, 556, 792
BcgI CGANNNNNNTGC 2 cut(s) 1442, 1476
BciT130I CCWGG 1 cut(s) 625
BclI TGATCA 1 cut(s) 930
BcnI CCSGG 4 cut(s) 169, 170, 436, 814
BcoDI GTCTC 1 cut(s) 1058
BfmI CTRYAG 1 cut(s) 866
BfoI RGCGCY 2 cut(s) 260, 962
BfuAI ACCTGC 2 cut(s) 1192, 1401
BlpI GCTNAGC 1 cut(s) 833
Bme1390I CCNGG 5 cut(s) 169, 170, 436, 625, 814
Bme18I GGWCC 1 cut(s) 816
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 4 cut(s) 56, 171, 816, 1384
BmiI GGNNCC 6 cut(s) 58, 258, 817, 818, 960, 1386
BmrFI CCNGG 5 cut(s) 169, 170, 436, 625, 814
BmsI GCATC 1 cut(s) 494
BpiI GAAGAC 1 cut(s) 589
BpmI CTGGAG 1 cut(s) 5
Bpu1102I GCTNAGC 1 cut(s) 833
BpuEI CTTGAG 2 cut(s) 53, 631
BpuMI CCSGG 4 cut(s) 169, 170, 436, 814
BsaHI GRCGYC 4 cut(s) 257, 414, 717, 959
BsaJI CCNNGG 6 cut(s) 168, 174, 495, 774, 942, 962
BsaWI WCCGGW 1 cut(s) 700
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 203, 233
Bsc4I CCNNNNNNNGG 5 cut(s) 175, 452, 624, 747, 1206
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 2 cut(s) 1233, 1366
Bse3DI GCAATG 4 cut(s) 827, 1134, 1156, 1305
BseAI TCCGGA 1 cut(s) 700
BseBI CCWGG 1 cut(s) 625
BseDI CCNNGG 6 cut(s) 168, 174, 495, 774, 942, 962
BseGI GGATG 5 cut(s) 485, 820, 1026, 1036, 1045
BseLI CCNNNNNNNGG 5 cut(s) 175, 452, 624, 747, 1206
BseMI GCAATG 4 cut(s) 827, 1134, 1156, 1305
BseMII CTCAG 4 cut(s) 29, 847, 1053, 1242
BseNI ACTGG 2 cut(s) 1233, 1366
BsePI GCGCGC 1 cut(s) 589
BseRI GAGGAG 7 cut(s) 89, 121, 124, 136, 230, 278, 607
BseXI GCAGC 6 cut(s) 172, 542, 562, 634, 852, 1210
BseYI CCCAGC 1 cut(s) 686
BsgI GTGCAG 3 cut(s) 1004, 1209, 1410
Bsh1236I CGCG 5 cut(s) 44, 497, 548, 591, 593
BshNI GGYRCC 2 cut(s) 256, 958
BsiHKAI GWGCWC 2 cut(s) 468, 617
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 8 cut(s) 169, 254, 260, 435, 446, 461, 701, 813
BslFI GGGAC 1 cut(s) 829
BslI CCNNNNNNNGG 5 cut(s) 175, 452, 624, 747, 1206
BsmAI GTCTC 1 cut(s) 1058
BsmFI GGGAC 1 cut(s) 829
BsmI GAATGC 1 cut(s) 1438
BsoBI CYCGRG 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 468, 617
Bsp13I TCCGGA 1 cut(s) 700
Bsp143I GATC 9 cut(s) 164, 205, 342, 438, 697, 789, 849, 930, 1042
Bsp1720I GCTNAGC 1 cut(s) 833
Bsp19I CCATGG 1 cut(s) 962
Bsp68I TCGCGA 1 cut(s) 44
BspCNI CTCAG 4 cut(s) 28, 846, 1054, 1243
BspEI TCCGGA 1 cut(s) 700
BspFNI CGCG 5 cut(s) 44, 497, 548, 591, 593
BspLI GGNNCC 6 cut(s) 58, 258, 817, 818, 960, 1386
BspMAI CTGCAG 1 cut(s) 870
BspMI ACCTGC 2 cut(s) 1192, 1401
BspPI GGATC 5 cut(s) 159, 200, 446, 692, 1037
BspT107I GGYRCC 2 cut(s) 256, 958
BsrBI CCGCTC 1 cut(s) 353
BsrDI GCAATG 4 cut(s) 827, 1134, 1156, 1305
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 2 cut(s) 1233, 1366
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 6 cut(s) 168, 174, 495, 774, 942, 962
BssHII GCGCGC 1 cut(s) 589
BssMI GATC 9 cut(s) 164, 205, 342, 438, 697, 789, 849, 930, 1042
BssNI GRCGYC 4 cut(s) 257, 414, 717, 959
BssSI CACGAG 1 cut(s) 904
BssT1I CCWWGG 1 cut(s) 962
Bst2BI CACGAG 1 cut(s) 904
Bst2UI CCWGG 1 cut(s) 625
Bst4CI ACNGT 2 cut(s) 742, 1103
Bst6I CTCTTC 1 cut(s) 146
BstACI GRCGYC 4 cut(s) 257, 414, 717, 959
BstAPI GCANNNNNTGC 4 cut(s) 408, 568, 1232, 1433
BstC8I GCNNGC 6 cut(s) 255, 429, 458, 591, 957, 1131
BstDEI CTNAG 4 cut(s) 15, 833, 1062, 1251
BstDSI CCRYGG 3 cut(s) 495, 774, 962
BstENI CCTNNNNNAGG 1 cut(s) 622
BstF5I GGATG 5 cut(s) 485, 820, 1026, 1036, 1045
BstFNI CGCG 5 cut(s) 44, 497, 548, 591, 593
BstH2I RGCGCY 2 cut(s) 260, 962
BstHHI GCGC 7 cut(s) 259, 427, 550, 591, 593, 781, 961
BstKTI GATC 9 cut(s) 167, 208, 345, 441, 700, 792, 852, 933, 1045
BstMAI GTCTC 1 cut(s) 1058
BstMBI GATC 9 cut(s) 164, 205, 342, 438, 697, 789, 849, 930, 1042
BstNI CCWGG 1 cut(s) 625
BstSCI CCNGG 5 cut(s) 167, 168, 434, 623, 812
BstSFI CTRYAG 1 cut(s) 866
BstUI CGCG 5 cut(s) 44, 497, 548, 591, 593
BstV1I GCAGC 6 cut(s) 172, 542, 562, 634, 852, 1210
BstV2I GAAGAC 1 cut(s) 589
BstX2I RGATCY 2 cut(s) 438, 697
BstXI CCANNNNNNTGG 1 cut(s) 1141
BstYI RGATCY 2 cut(s) 438, 697
BtgI CCRYGG 3 cut(s) 495, 774, 962
BtsCI GGATG 5 cut(s) 485, 820, 1026, 1036, 1045
BtsIMutI CAGTG 3 cut(s) 987, 1226, 1427
BtuMI TCGCGA 1 cut(s) 44
BveI ACCTGC 2 cut(s) 1192, 1401
Cac8I GCNNGC 6 cut(s) 255, 429, 458, 591, 957, 1131
CfoI GCGC 7 cut(s) 259, 427, 550, 591, 593, 781, 961
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 4 cut(s) 56, 171, 816, 1384
Cfr42I CCGCGG 1 cut(s) 498
Cfr9I CCCGGG 1 cut(s) 168
CseI GACGC 1 cut(s) 422
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 963
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 4 cut(s) 15, 833, 1062, 1251
DinI GGCGCC 2 cut(s) 258, 960
DpnI GATC 9 cut(s) 166, 207, 344, 440, 699, 791, 851, 932, 1044
DpnII GATC 9 cut(s) 164, 205, 342, 438, 697, 789, 849, 930, 1042
EaeI YGGCCR 7 cut(s) 3, 311, 458, 810, 915, 939, 1363
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EciI GGCGGA 2 cut(s) 268, 293
Ecl136II GAGCTC 2 cut(s) 466, 615
Eco130I CCWWGG 1 cut(s) 962
Eco24I GRGCYC 2 cut(s) 468, 617
Eco47I GGWCC 1 cut(s) 816
Eco53kI GAGCTC 2 cut(s) 466, 615
Eco57I CTGAAG 3 cut(s) 503, 714, 897
Eco88I CYCGRG 1 cut(s) 168
EcoICRI GAGCTC 2 cut(s) 466, 615
EcoNI CCTNNNNNAGG 1 cut(s) 622
EcoO109I RGGNCCY 1 cut(s) 816
EcoRI GAATTC 1 cut(s) 976
EcoRII CCWGG 1 cut(s) 623
EcoT14I CCWWGG 1 cut(s) 962
EcoT38I GRGCYC 2 cut(s) 468, 617
EgeI GGCGCC 2 cut(s) 258, 960
EheI GGCGCC 2 cut(s) 258, 960
ErhI CCWWGG 1 cut(s) 962
FaeI CATG 1 cut(s) 966
FaqI GGGAC 1 cut(s) 829
FatI CATG 1 cut(s) 962
FauI CCCGC 1 cut(s) 1075
FbaI TGATCA 1 cut(s) 930
FblI GTMKAC 2 cut(s) 11, 1373
FokI GGATG 5 cut(s) 472, 807, 1033, 1043, 1052
FriOI GRGCYC 2 cut(s) 468, 617
GlaI GCGC 7 cut(s) 258, 426, 549, 590, 592, 780, 960
GsaI CCCAGC 1 cut(s) 690
GsuI CTGGAG 1 cut(s) 5
HaeII RGCGCY 2 cut(s) 260, 962
HapII CCGG 8 cut(s) 169, 254, 260, 435, 446, 461, 701, 813
HgaI GACGC 1 cut(s) 422
HhaI GCGC 7 cut(s) 259, 427, 550, 591, 593, 781, 961
Hin1I GRCGYC 4 cut(s) 257, 414, 717, 959
Hin1II CATG 1 cut(s) 966
Hin6I GCGC 7 cut(s) 257, 425, 548, 589, 591, 779, 959
HinP1I GCGC 7 cut(s) 257, 425, 548, 589, 591, 779, 959
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 8 cut(s) 8, 13, 49, 212, 263, 500, 524, 1456
HpaII CCGG 8 cut(s) 169, 254, 260, 435, 446, 461, 701, 813
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 12, 1374
Hpy188I TCNGA 7 cut(s) 157, 325, 694, 825, 857, 1030, 1252
Hpy188III TCNNGA 8 cut(s) 43, 209, 267, 521, 538, 701, 713, 721
Hpy8I GTNNAC 2 cut(s) 12, 1374
Hpy99I CGWCG 5 cut(s) 49, 416, 638, 719, 1464
HpyAV CCTTC 1 cut(s) 1168
HpyCH4III ACNGT 2 cut(s) 742, 1103
HpyCH4IV ACGT 2 cut(s) 636, 717
HpyCH4V TGCA 9 cut(s) 195, 868, 985, 1123, 1226, 1358, 1396, 1427, 1453
HpyF3I CTNAG 4 cut(s) 15, 833, 1062, 1251
HpySE526I ACGT 2 cut(s) 636, 717
Hsp92I GRCGYC 4 cut(s) 257, 414, 717, 959
Hsp92II CATG 1 cut(s) 966
HspAI GCGC 7 cut(s) 257, 425, 548, 589, 591, 779, 959
KasI GGCGCC 2 cut(s) 256, 958
KflI GGGWCCC 1 cut(s) 816
Kpn2I TCCGGA 1 cut(s) 700
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
Ksp22I TGATCA 1 cut(s) 930
KspI CCGCGG 1 cut(s) 498
Kzo9I GATC 9 cut(s) 164, 205, 342, 438, 697, 789, 849, 930, 1042
LmnI GCTCC 4 cut(s) 24, 463, 620, 1285
Lsp1109I GCAGC 6 cut(s) 172, 542, 562, 634, 852, 1210
LweI GCATC 1 cut(s) 494
MaeII ACGT 2 cut(s) 636, 717
MaeIII GTNAC 1 cut(s) 1179
MalI GATC 9 cut(s) 166, 207, 344, 440, 699, 791, 851, 932, 1044
MbiI CCGCTC 1 cut(s) 353
MboI GATC 9 cut(s) 164, 205, 342, 438, 697, 789, 849, 930, 1042
MboII GAAGA 4 cut(s) 133, 589, 707, 1222
MflI RGATCY 2 cut(s) 438, 697
MhlI GDGCHC 2 cut(s) 468, 617
MlsI TGGCCA 3 cut(s) 313, 917, 1365
MluCI AATT 9 cut(s) 151, 245, 389, 584, 667, 752, 806, 976, 1245
MluNI TGGCCA 3 cut(s) 313, 917, 1365
Mly113I GGCGCC 2 cut(s) 257, 959
MlyI GAGTC 4 cut(s) 7, 17, 206, 257
MmeI TCCRAC 2 cut(s) 848, 873
Mox20I TGGCCA 3 cut(s) 313, 917, 1365
MreI CGCCGGCG 1 cut(s) 253
MroI TCCGGA 1 cut(s) 700
MroNI GCCGGC 1 cut(s) 253
MscI TGGCCA 3 cut(s) 313, 917, 1365
MseI TTAA 4 cut(s) 639, 654, 1353, 1477
MslI CAYNNNNRTG 2 cut(s) 887, 1013
Msp20I TGGCCA 3 cut(s) 313, 917, 1365
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 8 cut(s) 169, 254, 260, 435, 446, 461, 701, 813
MspR9I CCNGG 5 cut(s) 169, 170, 436, 625, 814
Mva1269I GAATGC 1 cut(s) 1438
MvaI CCWGG 1 cut(s) 625
MvnI CGCG 5 cut(s) 44, 497, 548, 591, 593
NaeI GCCGGC 1 cut(s) 255
NarI GGCGCC 2 cut(s) 257, 959
NciI CCSGG 4 cut(s) 169, 170, 436, 814
NcoI CCATGG 1 cut(s) 962
NdeII GATC 9 cut(s) 164, 205, 342, 438, 697, 789, 849, 930, 1042
NgoMIV GCCGGC 1 cut(s) 253
NlaIII CATG 1 cut(s) 966
NlaIV GGNNCC 6 cut(s) 58, 258, 817, 818, 960, 1386
NmeAIII GCCGAG 3 cut(s) 31, 199, 967
NruI TCGCGA 1 cut(s) 44
PauI GCGCGC 1 cut(s) 589
PcsI WCGNNNNNNNCGW 1 cut(s) 509
PctI GAATGC 1 cut(s) 1438
PdiI GCCGGC 1 cut(s) 255
PfeI GAWTC 4 cut(s) 49, 500, 524, 1456
PflMI CCANNNNNTGG 1 cut(s) 1206
PleI GAGTC 4 cut(s) 7, 16, 206, 257
PluTI GGCGCC 2 cut(s) 260, 962
PpsI GAGTC 4 cut(s) 7, 16, 206, 257
PpuMI RGGWCCY 1 cut(s) 816
PshBI ATTAAT 1 cut(s) 1353
Psp124BI GAGCTC 2 cut(s) 468, 617
Psp5II RGGWCCY 1 cut(s) 816
Psp6I CCWGG 1 cut(s) 623
PspFI CCCAGC 1 cut(s) 686
PspGI CCWGG 1 cut(s) 623
PspN4I GGNNCC 6 cut(s) 58, 258, 817, 818, 960, 1386
PspPI GGNCC 4 cut(s) 56, 171, 816, 1384
PspPPI RGGWCCY 1 cut(s) 816
PstI CTGCAG 1 cut(s) 870
PsuI RGATCY 2 cut(s) 438, 697
PteI GCGCGC 1 cut(s) 589
RruI TCGCGA 1 cut(s) 44
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 2 cut(s) 887, 1013
SacI GAGCTC 2 cut(s) 468, 617
SacII CCGCGG 1 cut(s) 498
SalI GTCGAC 1 cut(s) 10
SaqAI TTAA 4 cut(s) 639, 654, 1353, 1477
Sau3AI GATC 9 cut(s) 164, 205, 342, 438, 697, 789, 849, 930, 1042
Sau96I GGNCC 4 cut(s) 56, 171, 816, 1384
SchI GAGTC 4 cut(s) 7, 17, 206, 257
ScrFI CCNGG 5 cut(s) 169, 170, 436, 625, 814
SduI GDGCHC 2 cut(s) 468, 617
SfaNI GCATC 1 cut(s) 494
SfcI CTRYAG 1 cut(s) 866
SfoI GGCGCC 2 cut(s) 258, 960
Sfr303I CCGCGG 1 cut(s) 498
SgrAI CRCCGGYG 1 cut(s) 253
SgrBI CCGCGG 1 cut(s) 498
SinI GGWCC 1 cut(s) 816
SmaI CCCGGG 1 cut(s) 170
SmiMI CAYNNNNRTG 2 cut(s) 887, 1013
SmlI CTYRAG 2 cut(s) 32, 610
SmoI CTYRAG 2 cut(s) 32, 610
Sse9I AATT 9 cut(s) 151, 245, 389, 584, 667, 752, 806, 976, 1245
SspDI GGCGCC 2 cut(s) 256, 958
SstI GAGCTC 2 cut(s) 468, 617
StyD4I CCNGG 5 cut(s) 167, 168, 434, 623, 812
StyI CCWWGG 1 cut(s) 962
TaaI ACNGT 2 cut(s) 742, 1103
TaiI ACGT 2 cut(s) 639, 720
TaqI TCGA 1 cut(s) 11
TasI AATT 9 cut(s) 151, 245, 389, 584, 667, 752, 806, 976, 1245
TauI GCSGC 5 cut(s) 434, 511, 562, 840, 1149
TfiI GAWTC 4 cut(s) 49, 500, 524, 1456
Tru1I TTAA 4 cut(s) 639, 654, 1353, 1477
Tru9I TTAA 4 cut(s) 639, 654, 1353, 1477
TscAI CASTG 3 cut(s) 987, 1233, 1434
TseI GCWGC 6 cut(s) 160, 530, 550, 647, 865, 1223
TspDTI ATGAA 2 cut(s) 661, 790
TspGWI ACGGA 1 cut(s) 478
TspMI CCCGGG 1 cut(s) 168
TspRI CASTG 3 cut(s) 987, 1233, 1434
Van91I CCANNNNNTGG 1 cut(s) 1206
VpaK11BI GGWCC 1 cut(s) 816
VspI ATTAAT 1 cut(s) 1353
XagI CCTNNNNNAGG 1 cut(s) 622
XapI RAATTY 2 cut(s) 976, 1245
XcmI CCANNNNNNNNNTGG 1 cut(s) 889
XmaI CCCGGG 1 cut(s) 168
XmiI GTMKAC 2 cut(s) 11, 1373
ZraI GACGTC 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.