Rorug05G0384600

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000148
Physical Location & Seq
Forward (+)
52224366 .. 52228343
3978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0384600.1

Sequence Viewer

Length: 477 bp
ATGGACTCAGGATCCGTCCACAGCGAGAATCCGGTCCAAGCTGAGCAAGAGACCCACACTCAAGGAGGTAAACTCAAAGAGAAACCCACTGACCAGCAGGGCAAGTATAAGGACCTAAAAATCTACATAGAAGAGAAAGAACTCATAGGGGTAGAACCCAAAGAGATATACAAATTCCACCTGGGACCAGATGACGAGAATCTAACCCTGCGGATTGATAAGGACCTGTTGATCCATATTCAAGGAAAAGAAGTCAGGGTTGTACGACTCAAAGAGAAATTTAGACGCCCCATAGGATCAGCCTGGCAGGGCGAGAATCCAGCCCAGCAGATCAATAACGAGATCCATAATCCAGATTTGTTTTATGCTTTTGCAAATCATCCGGCAAAGAGGTTCCGTTTTGCAGATGATGATGATGATACTGACCTGTGTCACACATCTGATGGTCCGAAGATCAAGGTTCGTAAGCTGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

158

Amino Acids

18.22

Weight (kDa)

5.98

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 211
AclWI GGATC 5 cut(s) 6, 19, 226, 304, 337
AcsI RAATTY 2 cut(s) 173, 278
AcyI GRCGYC 1 cut(s) 286
AfaI GTAC 1 cut(s) 264
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 2 cut(s) 180, 302
AluBI AGCT 2 cut(s) 41, 469
AluI AGCT 2 cut(s) 41, 469
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 5 cut(s) 6, 19, 226, 304, 337
ApoI RAATTY 2 cut(s) 173, 278
AspS9I GGNCC 5 cut(s) 34, 112, 185, 223, 446
AvaII GGWCC 5 cut(s) 34, 112, 185, 223, 446
BamHI GGATCC 1 cut(s) 11
BccI CCATC 1 cut(s) 437
BciT130I CCWGG 2 cut(s) 182, 304
BcoDI GTCTC 1 cut(s) 44
BlpI GCTNAGC 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 182, 304
Bme18I GGWCC 5 cut(s) 34, 112, 185, 223, 446
BmgT120I GGNCC 5 cut(s) 34, 112, 185, 223, 446
BmiI GGNNCC 3 cut(s) 13, 186, 395
BmrFI CCNGG 2 cut(s) 182, 304
BoxI GACNNNNGTC 1 cut(s) 429
BplI GAGNNNNNCTC 2 cut(s) 57, 89
Bpu1102I GCTNAGC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 181
BsaWI WCCGGW 1 cut(s) 31
BseBI CCWGG 2 cut(s) 182, 304
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 21, 33
BseYI CCCAGC 1 cut(s) 324
BsiSI CCGG 2 cut(s) 32, 383
BslFI GGGAC 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 198
Bso31I GGTCTC 1 cut(s) 44
Bsp143I GATC 6 cut(s) 11, 231, 296, 330, 342, 453
Bsp1720I GCTNAGC 1 cut(s) 42
BspACI CCGC 1 cut(s) 211
BspCNI CTCAG 2 cut(s) 20, 34
BspLI GGNNCC 3 cut(s) 13, 186, 395
BspPI GGATC 5 cut(s) 6, 19, 226, 304, 337
BspTNI GGTCTC 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 6 cut(s) 11, 231, 296, 330, 342, 453
BssNI GRCGYC 1 cut(s) 286
Bst2UI CCWGG 2 cut(s) 182, 304
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 7, 42
BstF5I GGATG 1 cut(s) 379
BstKTI GATC 6 cut(s) 14, 234, 299, 333, 345, 456
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 6 cut(s) 11, 231, 296, 330, 342, 453
BstNI CCWGG 2 cut(s) 182, 304
BstPAI GACNNNNGTC 1 cut(s) 429
BstSCI CCNGG 2 cut(s) 180, 302
BstX2I RGATCY 2 cut(s) 11, 342
BstYI RGATCY 2 cut(s) 11, 342
BtsCI GGATG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 87
Cfr13I GGNCC 5 cut(s) 34, 112, 185, 223, 446
CseI GACGC 1 cut(s) 294
Csp6I GTAC 1 cut(s) 263
CviJI RGCY 4 cut(s) 41, 302, 323, 469
CviKI_1 RGCY 4 cut(s) 41, 302, 323, 469
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 2 cut(s) 7, 42
DpnI GATC 6 cut(s) 13, 233, 298, 332, 344, 455
DpnII GATC 6 cut(s) 11, 231, 296, 330, 342, 453
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 5 cut(s) 34, 112, 185, 223, 446
EcoO109I RGGNCCY 2 cut(s) 112, 223
EcoRII CCWGG 2 cut(s) 180, 302
FaiI YATR 9 cut(s) 108, 128, 146, 169, 237, 293, 348, 366, 475
FaqI GGGAC 1 cut(s) 198
FokI GGATG 1 cut(s) 366
GsaI CCCAGC 1 cut(s) 328
HapII CCGG 2 cut(s) 32, 383
HgaI GACGC 1 cut(s) 294
Hin1I GRCGYC 1 cut(s) 286
HinfI GANTC 5 cut(s) 5, 28, 199, 267, 316
HpaII CCGG 2 cut(s) 32, 383
Hpy166II GTNNAC 2 cut(s) 19, 71
Hpy188I TCNGA 2 cut(s) 442, 450
Hpy188III TCNNGA 2 cut(s) 9, 353
Hpy8I GTNNAC 2 cut(s) 19, 71
HpyCH4V TGCA 2 cut(s) 374, 404
HpyF3I CTNAG 2 cut(s) 7, 42
Hsp92I GRCGYC 1 cut(s) 286
Kzo9I GATC 6 cut(s) 11, 231, 296, 330, 342, 453
MaeIII GTNAC 1 cut(s) 431
MalI GATC 6 cut(s) 13, 233, 298, 332, 344, 455
MboI GATC 6 cut(s) 11, 231, 296, 330, 342, 453
MboII GAAGA 2 cut(s) 143, 463
MflI RGATCY 2 cut(s) 11, 342
MluCI AATT 2 cut(s) 173, 278
MlyI GAGTC 1 cut(s) 261
MnlI CCTC 2 cut(s) 59, 384
MspI CCGG 2 cut(s) 32, 383
MspR9I CCNGG 2 cut(s) 182, 304
MvaI CCWGG 2 cut(s) 182, 304
NdeII GATC 6 cut(s) 11, 231, 296, 330, 342, 453
NlaIV GGNNCC 3 cut(s) 13, 186, 395
NmuCI GTSAC 1 cut(s) 431
PfeI GAWTC 3 cut(s) 28, 199, 316
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PpuMI RGGWCCY 2 cut(s) 112, 223
PshAI GACNNNNGTC 1 cut(s) 429
Psp5II RGGWCCY 2 cut(s) 112, 223
Psp6I CCWGG 2 cut(s) 180, 302
PspFI CCCAGC 1 cut(s) 324
PspGI CCWGG 2 cut(s) 180, 302
PspN4I GGNNCC 3 cut(s) 13, 186, 395
PspPI GGNCC 5 cut(s) 34, 112, 185, 223, 446
PspPPI RGGWCCY 2 cut(s) 112, 223
PsuI RGATCY 2 cut(s) 11, 342
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
Sau3AI GATC 6 cut(s) 11, 231, 296, 330, 342, 453
Sau96I GGNCC 5 cut(s) 34, 112, 185, 223, 446
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 2 cut(s) 182, 304
SetI ASST 9 cut(s) 43, 70, 117, 183, 228, 395, 429, 462, 471
SinI GGWCC 5 cut(s) 34, 112, 185, 223, 446
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 2 cut(s) 173, 278
SsiI CCGC 1 cut(s) 211
StyD4I CCNGG 2 cut(s) 180, 302
TasI AATT 2 cut(s) 173, 278
TfiI GAWTC 3 cut(s) 28, 199, 316
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 1 cut(s) 431
Tsp45I GTSAC 1 cut(s) 431
TspGWI ACGGA 2 cut(s) 4, 386
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 5 cut(s) 34, 112, 185, 223, 446
XapI RAATTY 2 cut(s) 173, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.