pycom11g07200

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000148
Physical Location & Seq
Reverse (-)
5440644 .. 5441429
786 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07200.2

Sequence Viewer

Length: 702 bp
ATGGGGAATACGATAAACTTGAAGGCATTGGTGGATAAGGGGCGCAACAAAGTTATCTTCATAGAGTCCGAGAGTGCTTTTGTTGATGTTCTTGTAAGTTTCTTGACAATCCCCTTAGGAACAATACTCAAGCTTGGTCGTGAGCATTCAGCACCAGTGGAGATAGGATGCATGAACAATTTGTATTCAAGTGTGAAGGAAATTGACGCAAGTAAGTTGCGTTCAGATGCATGTAGAGAAATGTTGTTGCTTCCCCACAACGCGGCTGAACCTCATTGCAAGAACCTTGTATTGCAAATTGATCACAAAGCCAAGCCAACACGGTACTTTGTATGCCCTTATACTCTTTGTATGATCGATGCCACAAGAAGGTTCTTCAGTTATTACCGAGGTATCTCTAATCCATGGTGCCAACATTCCATGGATCGTGAGATTACATTTTCTGTGGATGTTGCAAGCGCATTTGCAACAGAGTCAGCCAGGCTTCTGATTACCGATGATTTACAACTGATCTCCCCTTCTAGCAAATCAATCGATTCTTTATTTACCAATCTTGGAGTCACCAATAGGAATACTACCGAGGAGTTGAATTTGAATATTGGAGTTGATAAGGTTATGAATTTGCTTATAAGCTCCTTAGTATCAAAGACACCATTGACCGAAACTCTACTGAAGCATAAACGTGGCCGAACGGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

234

Amino Acids

26.09

Weight (kDa)

8.19

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 629
AccB1I GGYRCC 1 cut(s) 408
AccII CGCG 1 cut(s) 263
AciI CCGC 1 cut(s) 263
AclWI GGATC 1 cut(s) 432
AcoI YGGCCR 1 cut(s) 685
AcsI RAATTY 2 cut(s) 589, 619
AcuI CTGAAG 2 cut(s) 361, 692
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 262, 369
AgsI TTSAA 4 cut(s) 22, 189, 589, 595
AjnI CCWGG 1 cut(s) 479
AluBI AGCT 2 cut(s) 133, 633
AluI AGCT 2 cut(s) 133, 633
AlwI GGATC 1 cut(s) 432
AoxI GGCC 1 cut(s) 685
ApoI RAATTY 2 cut(s) 589, 619
AspLEI GCGC 2 cut(s) 45, 461
AsuHPI GGTGA 1 cut(s) 553
AxyI CCTNAGG 1 cut(s) 115
BaeI ACNNNNGTAYC 2 cut(s) 376, 409
BanI GGYRCC 1 cut(s) 408
BcgI CGANNNNNNTGC 2 cut(s) 514, 548
BciT130I CCWGG 1 cut(s) 481
BclI TGATCA 1 cut(s) 301
BfaI CTAG 1 cut(s) 522
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 481
BmiI GGNNCC 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 481
BmsI GCATC 3 cut(s) 158, 217, 349
BpuEI CTTGAG 1 cut(s) 113
Bsa29I ATCGAT 2 cut(s) 357, 534
BsaJI CCNNGG 4 cut(s) 388, 404, 420, 579
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 369
Bse1I ACTGG 1 cut(s) 155
Bse21I CCTNAGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 274
BseBI CCWGG 1 cut(s) 481
BseCI ATCGAT 2 cut(s) 357, 534
BseDI CCNNGG 4 cut(s) 388, 404, 420, 579
BseGI GGATG 2 cut(s) 173, 454
BseLI CCNNNNNNNGG 2 cut(s) 262, 369
BseMI GCAATG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 596
Bsh1236I CGCG 1 cut(s) 263
BshFI GGCC 1 cut(s) 687
BshNI GGYRCC 1 cut(s) 408
BshVI ATCGAT 2 cut(s) 357, 534
BslI CCNNNNNNNGG 2 cut(s) 262, 369
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 687
Bsp143I GATC 4 cut(s) 301, 354, 424, 510
Bsp19I CCATGG 2 cut(s) 404, 420
BspACI CCGC 1 cut(s) 263
BspANI GGCC 1 cut(s) 687
BspDI ATCGAT 2 cut(s) 357, 534
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 410
BspPI GGATC 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 4 cut(s) 388, 404, 420, 579
BssMI GATC 4 cut(s) 301, 354, 424, 510
BssT1I CCWWGG 2 cut(s) 404, 420
Bst2UI CCWGG 1 cut(s) 481
Bst4CI ACNGT 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 2 cut(s) 115, 637
BstDSI CCRYGG 2 cut(s) 404, 420
BstF5I GGATG 2 cut(s) 173, 454
BstFNI CGCG 1 cut(s) 263
BstHHI GCGC 2 cut(s) 45, 461
BstKTI GATC 4 cut(s) 304, 357, 427, 513
BstMBI GATC 4 cut(s) 301, 354, 424, 510
BstNI CCWGG 1 cut(s) 481
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 479
BstUI CGCG 1 cut(s) 263
Bsu15I ATCGAT 2 cut(s) 357, 534
Bsu36I CCTNAGG 1 cut(s) 115
BsuRI GGCC 1 cut(s) 687
BsuTUI ATCGAT 2 cut(s) 357, 534
BtgI CCRYGG 2 cut(s) 404, 420
BtsCI GGATG 2 cut(s) 173, 454
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 457
CfoI GCGC 2 cut(s) 45, 461
ClaI ATCGAT 2 cut(s) 357, 534
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 325
CviAII CATG 4 cut(s) 172, 231, 405, 421
CviJI RGCY 8 cut(s) 133, 266, 311, 316, 479, 484, 633, 687
CviKI_1 RGCY 8 cut(s) 133, 266, 311, 316, 479, 484, 633, 687
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 2 cut(s) 115, 637
DpnI GATC 4 cut(s) 303, 356, 426, 512
DpnII GATC 4 cut(s) 301, 354, 424, 510
EaeI YGGCCR 1 cut(s) 685
Eco130I CCWWGG 2 cut(s) 404, 420
Eco57I CTGAAG 2 cut(s) 361, 692
Eco81I CCTNAGG 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 479
EcoT14I CCWWGG 2 cut(s) 404, 420
EcoT22I ATGCAT 2 cut(s) 173, 232
ErhI CCWWGG 2 cut(s) 404, 420
FaeI CATG 4 cut(s) 175, 234, 408, 424
FatI CATG 4 cut(s) 171, 230, 404, 420
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 2 cut(s) 180, 461
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 1 cut(s) 522
GlaI GCGC 2 cut(s) 44, 460
GluI GCNGC 1 cut(s) 264
HaeIII GGCC 1 cut(s) 687
HgaI GACGC 1 cut(s) 215
HhaI GCGC 2 cut(s) 45, 461
Hin1II CATG 4 cut(s) 175, 234, 408, 424
Hin6I GCGC 2 cut(s) 43, 459
HinP1I GCGC 2 cut(s) 43, 459
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 4 cut(s) 65, 473, 536, 558
HphI GGTGA 1 cut(s) 553
Hpy188I TCNGA 3 cut(s) 70, 226, 489
Hpy188III TCNNGA 3 cut(s) 103, 140, 428
HpyAV CCTTC 4 cut(s) 16, 190, 363, 528
HpyCH4III ACNGT 1 cut(s) 324
HpyCH4IV ACGT 1 cut(s) 682
HpyCH4V TGCA 6 cut(s) 171, 230, 279, 295, 455, 467
HpyF3I CTNAG 2 cut(s) 115, 637
HpySE526I ACGT 1 cut(s) 682
Hsp92II CATG 4 cut(s) 175, 234, 408, 424
HspAI GCGC 2 cut(s) 43, 459
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 4 cut(s) 301, 354, 424, 510
LmnI GCTCC 2 cut(s) 638, 694
LpnPI CCDG 3 cut(s) 168, 466, 493
LweI GCATC 3 cut(s) 158, 217, 349
MaeI CTAG 1 cut(s) 522
MaeII ACGT 1 cut(s) 682
MaeIII GTNAC 1 cut(s) 559
MalI GATC 4 cut(s) 303, 356, 426, 512
MboI GATC 4 cut(s) 301, 354, 424, 510
MboII GAAGA 2 cut(s) 49, 367
MluCI AATT 5 cut(s) 178, 201, 297, 589, 619
MlyI GAGTC 3 cut(s) 74, 482, 567
MnlI CCTC 3 cut(s) 282, 383, 574
Mph1103I ATGCAT 2 cut(s) 173, 232
MslI CAYNNNNRTG 1 cut(s) 681
MspR9I CCNGG 1 cut(s) 481
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 1 cut(s) 481
MvnI CGCG 1 cut(s) 263
NcoI CCATGG 2 cut(s) 404, 420
NdeII GATC 4 cut(s) 301, 354, 424, 510
NlaIII CATG 4 cut(s) 175, 234, 408, 424
NlaIV GGNNCC 1 cut(s) 410
NmuCI GTSAC 1 cut(s) 559
NsiI ATGCAT 2 cut(s) 173, 232
NspI RCATGY 1 cut(s) 234
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 536
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 3 cut(s) 73, 481, 566
PpsI GAGTC 3 cut(s) 73, 481, 566
PsiI TTATAA 1 cut(s) 629
Psp6I CCWGG 1 cut(s) 479
PspGI CCWGG 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 410
PsrI GAACNNNNNNTAC 2 cut(s) 205, 237
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 681
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 4 cut(s) 301, 354, 424, 510
SchI GAGTC 3 cut(s) 74, 482, 567
ScrFI CCNGG 1 cut(s) 481
SetI ASST 8 cut(s) 135, 274, 288, 374, 394, 615, 635, 685
SfaNI GCATC 3 cut(s) 158, 217, 349
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 5 cut(s) 178, 201, 297, 589, 619
SsiI CCGC 1 cut(s) 263
SspI AATATT 1 cut(s) 598
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 1 cut(s) 479
StyI CCWWGG 2 cut(s) 404, 420
TaaI ACNGT 1 cut(s) 324
TaiI ACGT 1 cut(s) 685
TaqI TCGA 2 cut(s) 357, 534
TaqII GACCGA 1 cut(s) 674
TasI AATT 5 cut(s) 178, 201, 297, 589, 619
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 1 cut(s) 536
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 559
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 3 cut(s) 49, 188, 632
TspRI CASTG 1 cut(s) 162
XapI RAATTY 2 cut(s) 589, 619
XceI RCATGY 1 cut(s) 234
XspI CTAG 1 cut(s) 522
Zsp2I ATGCAT 2 cut(s) 173, 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.