Rmu_sc0002253.1_g000044

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002253.1
OG0000148
Physical Location & Seq
Reverse (-)
174098 .. 175419
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002253.1_g000044.1.cds

Sequence Viewer

Length: 762 bp
atggtaaaagacaaaacgaatctggaaggaaccatttctgtcaagcttatagtgagcaaatcaaagaagatggtttgttacgcagaagcaggggaggattttgttaatttgcttttaagtttcttaactgttccgctggggtttattgttaagcacatggggaattgctcattacaaggatgcattgatcagttgtacaagagtgtccaggatcttgatgatcaatatatgatgtcaagctaccacaaagaaatgctactcactcgtaaacttgtccctggtttttgctacgagaaccatcttttaggaactgaggaagctacatattattatgctggttcaacaggttttctgtctactgatagagtccttcttgctactcaaactgcacttgctactaaatctatcaggtcatactgcagtcaagaaagtgctcaaacttcaataaggccaattgcttttagggatcccaaagccaatcataaccaaaataaaaatgctcaagttcaagggtttttagaaggaccggcaatgttcacagtgactgatgatctgaacataagacctgtatctctaatctttggcctgtctcttctaaatgaattgaaggtacctttgactgacatttatgtgcaaactgtgcaggtgcatgaagaggaggcgttgcgtcttttggtagctgcttttcttggtgactctgctctaaccaataccttcatcagggagacagagcaaaacaaaaggataaagcaagaacagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

253

Amino Acids

28.39

Weight (kDa)

5.98

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 634
Acc36I ACCTGC 1 cut(s) 634
Acc65I GGTACC 1 cut(s) 610
AccB1I GGYRCC 1 cut(s) 610
AccI GTMKAC 1 cut(s) 356
AciI CCGC 1 cut(s) 134
AclWI GGATC 3 cut(s) 219, 461, 474
AfaI GTAC 2 cut(s) 197, 612
AfiI CCNNNNNNNGG 1 cut(s) 720
AgsI TTSAA 4 cut(s) 342, 444, 509, 607
AjnI CCWGG 2 cut(s) 207, 277
AluBI AGCT 4 cut(s) 46, 240, 320, 680
AluI AGCT 4 cut(s) 46, 240, 320, 680
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 2 cut(s) 594, 719
AlwI GGATC 3 cut(s) 219, 461, 474
AlwNI CAGNNNCTG 1 cut(s) 545
AoxI GGCC 2 cut(s) 449, 583
ApeKI GCWGC 1 cut(s) 680
Asp700I GAANNNNTTC 1 cut(s) 34
Asp718I GGTACC 1 cut(s) 610
AspS9I GGNCC 1 cut(s) 524
AsuHPI GGTGA 1 cut(s) 704
AvaII GGWCC 1 cut(s) 524
BamHI GGATCC 1 cut(s) 466
BanI GGYRCC 1 cut(s) 610
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 1 cut(s) 667
BccI CCATC 2 cut(s) 64, 306
BciT130I CCWGG 2 cut(s) 209, 279
BclI TGATCA 2 cut(s) 187, 220
BcoDI GTCTC 2 cut(s) 594, 719
BfmI CTRYAG 1 cut(s) 418
BfuAI ACCTGC 1 cut(s) 634
BisI GCNGC 1 cut(s) 681
BlsI GCNGC 1 cut(s) 682
Bme1390I CCNGG 2 cut(s) 209, 279
Bme18I GGWCC 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 524
BmiI GGNNCC 3 cut(s) 31, 468, 612
BmrFI CCNGG 2 cut(s) 209, 279
BmsI GCATC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 486
BsaJI CCNNGG 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 720
Bse118I RCCGGY 1 cut(s) 526
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 2 cut(s) 209, 279
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 720
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 1 cut(s) 303
BseRI GAGGAG 1 cut(s) 671
BseXI GCAGC 1 cut(s) 667
BseYI CCCAGC 1 cut(s) 136
BsgI GTGCAG 2 cut(s) 372, 662
BshFI GGCC 2 cut(s) 451, 585
BshNI GGYRCC 1 cut(s) 610
BsiHKAI GWGCWC 1 cut(s) 436
BsiSI CCGG 1 cut(s) 527
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 720
BsmAI GTCTC 2 cut(s) 594, 719
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 2 cut(s) 451, 585
Bsp1286I GDGCHC 1 cut(s) 436
Bsp1407I TGTACA 1 cut(s) 195
Bsp143I GATC 5 cut(s) 187, 211, 220, 466, 550
BspACI CCGC 1 cut(s) 134
BspANI GGCC 2 cut(s) 451, 585
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 3 cut(s) 31, 468, 612
BspMAI CTGCAG 1 cut(s) 422
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 3 cut(s) 219, 461, 474
BspT107I GGYRCC 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 537
BsrFI RCCGGY 1 cut(s) 526
BsrGI TGTACA 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 526
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 5 cut(s) 187, 211, 220, 466, 550
Bst2UI CCWGG 2 cut(s) 209, 279
Bst4CI ACNGT 4 cut(s) 130, 541, 640, 759
Bst6I CTCTTC 2 cut(s) 597, 648
BstAPI GCANNNNNTGC 1 cut(s) 640
BstAUI TGTACA 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 312
BstENI CCTNNNNNAGG 1 cut(s) 718
BstF5I GGATG 1 cut(s) 185
BstKTI GATC 5 cut(s) 190, 214, 223, 469, 553
BstMAI GTCTC 2 cut(s) 594, 719
BstMBI GATC 5 cut(s) 187, 211, 220, 466, 550
BstMWI GCNNNNNNNGC 1 cut(s) 640
BstNI CCWGG 2 cut(s) 209, 279
BstSCI CCNGG 2 cut(s) 207, 277
BstSFI CTRYAG 1 cut(s) 418
BstV1I GCAGC 1 cut(s) 667
BstX2I RGATCY 2 cut(s) 211, 466
BstYI RGATCY 2 cut(s) 211, 466
BsuRI GGCC 2 cut(s) 451, 585
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 546
BveI ACCTGC 1 cut(s) 634
CaiI CAGNNNCTG 1 cut(s) 545
Cfr10I RCCGGY 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 524
CseI GACGC 1 cut(s) 656
Csp6I GTAC 2 cut(s) 196, 611
CviAII CATG 2 cut(s) 157, 650
CviJI RGCY 7 cut(s) 46, 240, 320, 451, 476, 585, 680
CviKI_1 RGCY 7 cut(s) 46, 240, 320, 451, 476, 585, 680
CviQI GTAC 2 cut(s) 196, 611
DdeI CTNAG 1 cut(s) 312
DpnI GATC 5 cut(s) 189, 213, 222, 468, 552
DpnII GATC 5 cut(s) 187, 211, 220, 466, 550
Eam1104I CTCTTC 2 cut(s) 597, 648
EarI CTCTTC 2 cut(s) 597, 648
Eco47I GGWCC 1 cut(s) 524
EcoNI CCTNNNNNAGG 1 cut(s) 718
EcoRII CCWGG 2 cut(s) 207, 277
EcoT22I ATGCAT 1 cut(s) 185
FaeI CATG 2 cut(s) 160, 653
FaqI GGGAC 1 cut(s) 260
FatI CATG 2 cut(s) 156, 649
FbaI TGATCA 2 cut(s) 187, 220
FblI GTMKAC 1 cut(s) 356
Fnu4HI GCNGC 1 cut(s) 681
FokI GGATG 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 681
GluI GCNGC 1 cut(s) 681
GsaI CCCAGC 1 cut(s) 140
HaeIII GGCC 2 cut(s) 451, 585
HapII CCGG 1 cut(s) 527
HgaI GACGC 1 cut(s) 656
Hin1II CATG 2 cut(s) 160, 653
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 3 cut(s) 19, 366, 695
HpaII CCGG 1 cut(s) 527
HphI GGTGA 1 cut(s) 704
Hpy166II GTNNAC 3 cut(s) 269, 357, 537
Hpy188I TCNGA 1 cut(s) 555
Hpy188III TCNNGA 3 cut(s) 23, 215, 425
Hpy8I GTNNAC 3 cut(s) 269, 357, 537
HpyAV CCTTC 5 cut(s) 20, 380, 515, 601, 724
HpyCH4III ACNGT 4 cut(s) 130, 541, 640, 759
HpyCH4V TGCA 6 cut(s) 183, 389, 420, 634, 643, 649
HpyF10VI GCNNNNNNNGC 1 cut(s) 640
HpyF3I CTNAG 1 cut(s) 312
Hsp92II CATG 2 cut(s) 160, 653
KpnI GGTACC 1 cut(s) 614
Ksp22I TGATCA 2 cut(s) 187, 220
Kzo9I GATC 5 cut(s) 187, 211, 220, 466, 550
Lsp1109I GCAGC 1 cut(s) 667
LweI GCATC 1 cut(s) 170
MaeIII GTNAC 3 cut(s) 77, 541, 692
MalI GATC 5 cut(s) 189, 213, 222, 468, 552
MboI GATC 5 cut(s) 187, 211, 220, 466, 550
MboII GAAGA 3 cut(s) 79, 584, 665
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 2 cut(s) 211, 466
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 4 cut(s) 106, 163, 453, 602
MlyI GAGTC 2 cut(s) 375, 689
MnlI CCTC 4 cut(s) 88, 307, 649, 652
Mph1103I ATGCAT 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 4 cut(s) 105, 116, 125, 150
MslI CAYNNNNRTG 1 cut(s) 629
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 1 cut(s) 527
MspR9I CCNGG 2 cut(s) 209, 279
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 2 cut(s) 209, 279
MwoI GCNNNNNNNGC 1 cut(s) 640
NdeII GATC 5 cut(s) 187, 211, 220, 466, 550
NlaIII CATG 2 cut(s) 160, 653
NlaIV GGNNCC 3 cut(s) 31, 468, 612
NmuCI GTSAC 2 cut(s) 541, 692
NsiI ATGCAT 1 cut(s) 185
PaqCI CACCTGC 1 cut(s) 634
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 19
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 1 cut(s) 682
PleI GAGTC 2 cut(s) 374, 689
PpsI GAGTC 2 cut(s) 374, 689
Psp6I CCWGG 2 cut(s) 207, 277
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 2 cut(s) 207, 277
PspN4I GGNNCC 3 cut(s) 31, 468, 612
PspPI GGNCC 1 cut(s) 524
PstI CTGCAG 1 cut(s) 422
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 2 cut(s) 211, 466
RsaI GTAC 2 cut(s) 197, 612
RsaNI GTAC 2 cut(s) 196, 611
RseI CAYNNNNRTG 1 cut(s) 629
SaqAI TTAA 4 cut(s) 105, 116, 125, 150
SatI GCNGC 1 cut(s) 681
Sau3AI GATC 5 cut(s) 187, 211, 220, 466, 550
Sau96I GGNCC 1 cut(s) 524
SchI GAGTC 2 cut(s) 375, 689
ScrFI CCNGG 2 cut(s) 209, 279
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 1 cut(s) 170
SfcI CTRYAG 1 cut(s) 418
SinI GGWCC 1 cut(s) 524
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 1 cut(s) 501
SmoI CTYRAG 1 cut(s) 501
Sse9I AATT 4 cut(s) 106, 163, 453, 602
SsiI CCGC 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 207, 277
TaaI ACNGT 4 cut(s) 130, 541, 640, 759
TasI AATT 4 cut(s) 106, 163, 453, 602
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 4 cut(s) 105, 116, 125, 150
Tru9I TTAA 4 cut(s) 105, 116, 125, 150
TscAI CASTG 1 cut(s) 546
TseFI GTSAC 2 cut(s) 541, 692
TseI GCWGC 1 cut(s) 680
Tsp45I GTSAC 2 cut(s) 541, 692
TspDTI ATGAA 3 cut(s) 615, 666, 706
TspRI CASTG 1 cut(s) 546
VpaK11BI GGWCC 1 cut(s) 524
XagI CCTNNNNNAGG 1 cut(s) 718
XmiI GTMKAC 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 34
Zsp2I ATGCAT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.