Rroxscaffold_1G00012880

Protein of unknown function (DUF674)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
15775034 .. 15775916
883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00012880.1

Sequence Viewer

Length: 513 bp
ATGGTTCAGAAAGTACCAGCTGAGAAGAACATTAGCTTGAAGGCGTTGGTGGACAAGGGGAGTAAGAGAGTTATCATTGGAGAGGCGGATAATGATTTTATTGATGTTCTTTTCAGTTTCTTGACAATACCGACAGGAAAAATTGTCAGGCTTGCCCGGGACCATTCCACACCACTGGGAATAGGATGCATGAACAAGTTGTATCAGAGTATTGAGAAGCTTGATGTGCAGGTTTTCAGGTCTAATGCATCTAGCATTTCCTTGTTTACCAAGCTTGGAGCCACGAATAGCAATACCACCGAGGAGTCAACTTTCAGTATTGGAGTCGAGCAGGTTTTGAATTTGCTTGTGAGTTTATTTGTATCAAAAAAGCCTTTCACTGAAACTCTGCAGAAGCCTAATCCTGTACCAAAATTAGGTTGTGTGACTTTCAGTCAAGGAATATGTATTGAATCTCAAGTGTCGGGGGCCTCGATAGATGAGGAAAAGAAAACATCTCTGTCAAGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

170

Amino Acids

18.43

Weight (kDa)

8.42

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 8 - 83 7.3e-26 Protein of unknown function (DUF674)
DUF674 PF05056 81 - 139 4.5e-07 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 220, 322
AciI CCGC 1 cut(s) 86
AcsI RAATTY 1 cut(s) 340
AfaI GTAC 2 cut(s) 15, 408
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 3 cut(s) 40, 340, 452
AhdI GACNNNNNGTC 1 cut(s) 432
AluBI AGCT 5 cut(s) 20, 36, 220, 274, 507
AluI AGCT 5 cut(s) 20, 36, 220, 274, 507
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 1 cut(s) 468
ApoI RAATTY 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 160, 468
AsuC2I CCSGG 2 cut(s) 157, 158
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 1 cut(s) 160
BcnI CCSGG 2 cut(s) 157, 158
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 389
BfuAI ACCTGC 2 cut(s) 220, 322
Bme1390I CCNGG 2 cut(s) 157, 158
Bme18I GGWCC 1 cut(s) 160
BmeRI GACNNNNNGTC 1 cut(s) 432
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 2 cut(s) 160, 468
BmiI GGNNCC 3 cut(s) 161, 280, 469
BmrFI CCNGG 2 cut(s) 157, 158
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 2 cut(s) 176, 257
BmuI ACTGGG 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 441
BpuMI CCSGG 2 cut(s) 157, 158
BsaJI CCNNGG 2 cut(s) 156, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse1I ACTGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 156, 300
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 317
BsgI GTGCAG 1 cut(s) 248
BshFI GGCC 1 cut(s) 470
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 416
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 470
BsoBI CYCGRG 1 cut(s) 156
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 470
BspCNI CTCAG 1 cut(s) 13
BspLI GGNNCC 3 cut(s) 161, 280, 469
BspMAI CTGCAG 1 cut(s) 393
BspMI ACCTGC 2 cut(s) 220, 322
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 156, 300
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 155, 156
BstSFI CTRYAG 1 cut(s) 389
BstXI CCANNNNNNTGG 1 cut(s) 175
BsuRI GGCC 1 cut(s) 470
BtsCI GGATG 1 cut(s) 191
BtsIMutI CAGTG 2 cut(s) 173, 378
BveI ACCTGC 2 cut(s) 220, 322
Cac8I GCNNGC 1 cut(s) 153
Cfr13I GGNCC 2 cut(s) 160, 468
Cfr9I CCCGGG 1 cut(s) 156
Csp6I GTAC 2 cut(s) 14, 407
CviAII CATG 1 cut(s) 190
CviQI GTAC 2 cut(s) 14, 407
DdeI CTNAG 1 cut(s) 21
DriI GACNNNNNGTC 1 cut(s) 432
Eam1105I GACNNNNNGTC 1 cut(s) 432
EciI GGCGGA 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 468
EcoT22I ATGCAT 2 cut(s) 191, 250
FaeI CATG 1 cut(s) 193
FaiI YATR 3 cut(s) 191, 445, 511
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 189
FokI GGATG 1 cut(s) 198
FspBI CTAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 470
HapII CCGG 1 cut(s) 157
Hin1II CATG 1 cut(s) 193
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HindIII AAGCTT 2 cut(s) 218, 272
HinfI GANTC 3 cut(s) 305, 324, 452
HpaII CCGG 1 cut(s) 157
Hpy166II GTNNAC 3 cut(s) 52, 267, 309
Hpy188I TCNGA 2 cut(s) 9, 207
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 3 cut(s) 52, 267, 309
HpyAV CCTTC 1 cut(s) 34
HpyCH4V TGCA 4 cut(s) 189, 229, 248, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 1 cut(s) 193
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 9 cut(s) 30, 120, 133, 161, 170, 215, 223, 317, 417
LweI GCATC 2 cut(s) 176, 257
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 424
MboII GAAGA 1 cut(s) 37
MluCI AATT 3 cut(s) 141, 340, 413
MlyI GAGTC 2 cut(s) 314, 333
MnlI CCTC 4 cut(s) 76, 295, 475, 481
Mph1103I ATGCAT 2 cut(s) 191, 250
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 2 cut(s) 157, 158
MwoI GCNNNNNNNGC 1 cut(s) 226
NciI CCSGG 2 cut(s) 157, 158
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 3 cut(s) 161, 280, 469
NmuCI GTSAC 1 cut(s) 424
NsiI ATGCAT 2 cut(s) 191, 250
PcsI WCGNNNNNNNCGW 1 cut(s) 470
PfeI GAWTC 1 cut(s) 452
PleI GAGTC 2 cut(s) 313, 332
PpsI GAGTC 2 cut(s) 313, 332
PspN4I GGNNCC 3 cut(s) 161, 280, 469
PspPI GGNCC 2 cut(s) 160, 468
PstI CTGCAG 1 cut(s) 393
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 2 cut(s) 15, 408
RsaNI GTAC 2 cut(s) 14, 407
Sau96I GGNCC 2 cut(s) 160, 468
SchI GAGTC 2 cut(s) 314, 333
ScrFI CCNGG 2 cut(s) 157, 158
SetI ASST 9 cut(s) 22, 38, 222, 234, 242, 276, 336, 421, 509
SfaNI GCATC 2 cut(s) 176, 257
SfcI CTRYAG 1 cut(s) 389
SinI GGWCC 1 cut(s) 160
SmaI CCCGGG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
Sse9I AATT 3 cut(s) 141, 340, 413
SsiI CCGC 1 cut(s) 86
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 2 cut(s) 155, 156
TaqI TCGA 2 cut(s) 327, 473
TasI AATT 3 cut(s) 141, 340, 413
TfiI GAWTC 1 cut(s) 452
TscAI CASTG 2 cut(s) 180, 385
TseFI GTSAC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 1 cut(s) 206
TspMI CCCGGG 1 cut(s) 156
TspRI CASTG 2 cut(s) 180, 385
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 1 cut(s) 340
XmaI CCCGGG 1 cut(s) 156
XspI CTAG 1 cut(s) 252
Zsp2I ATGCAT 2 cut(s) 191, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.