Rmu_sc0000435.1_g000067

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000435.1
OG0000148
Physical Location & Seq
Reverse (-)
290728 .. 292342
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000435.1_g000067.1.cds

Sequence Viewer

Length: 954 bp
atggctcaaaaagtatcagatgcgaagaatatcagcttgaaggcattagtggacaaggggagaaacacagtaatcttcgtagaggccgataatgatttcattgatgttctcttcagctttttgacattaccaatgggaaaaattgtcaggcttgcccgcgaccattcaacacctctggaaataggttgcatgaacaaattgtatcagagtattgagaagcttgatgtgcaggttttcaggtccaatgcatgtagagacatgttacttccgcagagtgcagctaactgtcattgcaagaacctcaaattgaaaattattgacgatgctgagccaaaactgtttcagtgttctacttctggttttcattcctccaggttaataagttattattcagctgttccttgccctttctgctcaaaggccatgaattttgaagtatatatttcagagggtgattctcaggttggaggggtctttgtgaaagagcgagccagggttatcattactgatgatttacaagtgatacccccattaagtgcagctagcatttccttgtttaccaagcttggagccacgaagaacaataccactgaggagctaactttcagtattggggtcgagcaggttttgaatttgcttctgagctcatttgtatcaaaaacgcctttcactgaaactctgctgaagcctaatcctgtaccaaaattaggtggtgtgaatttcagtcaaggaaaatgtattgaatctcaaatatcgggggactcgataaatgaggaaaaagaaaacatctctatcaagctcatagtacatctcactgatattgaggatcgaactgtgcatgttggcaagaacgaggctttgcgtcttttgttggcttctgttgtttctgactccattctaaccaatgctttcctatggaagccaaaggagccatcgattaagcaggagcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

317

Amino Acids

35.03

Weight (kDa)

6.54

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 220, 613
AccII CGCG 1 cut(s) 159
AciI CCGC 2 cut(s) 157, 269
AclWI GGATC 1 cut(s) 834
AcsI RAATTY 3 cut(s) 427, 631, 718
AcuI CTGAAG 2 cut(s) 97, 704
AfaI GTAC 2 cut(s) 699, 807
AfiI CCNNNNNNNGG 1 cut(s) 707
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 6 cut(s) 40, 168, 310, 434, 631, 743
AjnI CCWGG 2 cut(s) 371, 491
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 1 cut(s) 834
AoxI GGCC 2 cut(s) 84, 420
ApeKI GCWGC 2 cut(s) 278, 539
ApoI RAATTY 3 cut(s) 427, 631, 718
AspS9I GGNCC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 464
AsuNHI GCTAGC 1 cut(s) 542
AvaII GGWCC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 647
Bbv12I GWGCWC 1 cut(s) 647
BbvI GCAGC 2 cut(s) 290, 551
BccI CCATC 1 cut(s) 940
BciT130I CCWGG 2 cut(s) 373, 493
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 543
BfuAI ACCTGC 2 cut(s) 220, 613
BisI GCNGC 2 cut(s) 279, 540
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 2 cut(s) 280, 541
Bme1390I CCNGG 2 cut(s) 373, 493
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 2 cut(s) 571, 930
BmrFI CCNGG 2 cut(s) 373, 493
BmsI GCATC 2 cut(s) 10, 313
BmtI GCTAGC 1 cut(s) 546
BpmI CTGGAG 1 cut(s) 355
Bpu1102I GCTNAGC 1 cut(s) 327
Bsa29I ATCGAT 1 cut(s) 935
BsaJI CCNNGG 1 cut(s) 492
Bsc4I CCNNNNNNNGG 1 cut(s) 707
Bse3DI GCAATG 1 cut(s) 289
BseBI CCWGG 2 cut(s) 373, 493
BseCI ATCGAT 1 cut(s) 935
BseDI CCNNGG 1 cut(s) 492
BseLI CCNNNNNNNGG 1 cut(s) 707
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 4 cut(s) 318, 473, 582, 632
BseRI GAGGAG 1 cut(s) 608
BseXI GCAGC 2 cut(s) 290, 551
BsgI GTGCAG 3 cut(s) 248, 297, 558
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 86, 422
BshVI ATCGAT 1 cut(s) 935
BsiHKAI GWGCWC 1 cut(s) 647
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 1 cut(s) 707
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 773
BsnI GGCC 2 cut(s) 86, 422
Bsp1286I GDGCHC 1 cut(s) 647
Bsp143I GATC 1 cut(s) 826
Bsp1720I GCTNAGC 1 cut(s) 327
BspACI CCGC 2 cut(s) 157, 269
BspANI GGCC 2 cut(s) 86, 422
BspCNI CTCAG 4 cut(s) 319, 472, 583, 633
BspDI ATCGAT 1 cut(s) 935
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 571, 930
BspMI ACCTGC 2 cut(s) 220, 613
BspOI GCTAGC 1 cut(s) 546
BspPI GGATC 1 cut(s) 834
BsrDI GCAATG 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 492
BssMI GATC 1 cut(s) 826
Bst2UI CCWGG 2 cut(s) 373, 493
Bst4CI ACNGT 4 cut(s) 70, 287, 339, 835
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 4 cut(s) 153, 157, 489, 544
BstDEI CTNAG 4 cut(s) 327, 459, 591, 641
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 1 cut(s) 829
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 1 cut(s) 826
BstMWI GCNNNNNNNGC 3 cut(s) 226, 411, 928
BstNI CCWGG 2 cut(s) 373, 493
BstNSI RCATGY 3 cut(s) 252, 262, 842
BstSCI CCNGG 2 cut(s) 371, 491
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 290, 551
Bsu15I ATCGAT 1 cut(s) 935
BsuRI GGCC 2 cut(s) 86, 422
BsuTUI ATCGAT 1 cut(s) 935
BtsIMutI CAGTG 4 cut(s) 350, 588, 669, 813
BveI ACCTGC 2 cut(s) 220, 613
Cac8I GCNNGC 4 cut(s) 153, 157, 489, 544
Cfr13I GGNCC 1 cut(s) 240
ClaI ATCGAT 1 cut(s) 935
CseI GACGC 1 cut(s) 851
Csp6I GTAC 2 cut(s) 698, 806
CviAII CATG 5 cut(s) 190, 249, 259, 424, 839
CviQI GTAC 2 cut(s) 698, 806
DdeI CTNAG 4 cut(s) 327, 459, 591, 641
DpnI GATC 1 cut(s) 828
DpnII GATC 1 cut(s) 826
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 645
Eco24I GRGCYC 1 cut(s) 647
Eco47I GGWCC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 645
Eco57I CTGAAG 2 cut(s) 97, 704
EcoICRI GAGCTC 1 cut(s) 645
EcoRII CCWGG 2 cut(s) 371, 491
EcoT22I ATGCAT 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 647
FaeI CATG 5 cut(s) 193, 252, 262, 427, 842
FaiI YATR 9 cut(s) 191, 250, 260, 425, 439, 441, 803, 840, 916
FaqI GGGAC 1 cut(s) 773
FatI CATG 5 cut(s) 189, 248, 258, 423, 838
FauI CCCGC 1 cut(s) 164
Fnu4HI GCNGC 2 cut(s) 279, 540
FriOI GRGCYC 1 cut(s) 647
Fsp4HI GCNGC 2 cut(s) 279, 540
FspBI CTAG 1 cut(s) 543
GluI GCNGC 2 cut(s) 279, 540
GsuI CTGGAG 1 cut(s) 355
HaeIII GGCC 2 cut(s) 86, 422
HgaI GACGC 1 cut(s) 851
Hin1II CATG 5 cut(s) 193, 252, 262, 427, 842
HindIII AAGCTT 2 cut(s) 218, 563
HinfI GANTC 4 cut(s) 455, 743, 761, 890
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 2 cut(s) 52, 558
Hpy188I TCNGA 5 cut(s) 19, 207, 448, 642, 889
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 2 cut(s) 52, 558
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 4 cut(s) 70, 287, 339, 835
HpyCH4V TGCA 7 cut(s) 189, 229, 248, 278, 294, 539, 838
HpyF10VI GCNNNNNNNGC 3 cut(s) 226, 411, 928
HpyF3I CTNAG 4 cut(s) 327, 459, 591, 641
Hsp92II CATG 5 cut(s) 193, 252, 262, 427, 842
Kzo9I GATC 1 cut(s) 826
LmnI GCTCC 4 cut(s) 569, 595, 928, 946
Lsp1109I GCAGC 2 cut(s) 290, 551
LweI GCATC 2 cut(s) 10, 313
MaeI CTAG 1 cut(s) 543
MaeIII GTNAC 1 cut(s) 261
MalI GATC 1 cut(s) 828
MboI GATC 1 cut(s) 826
MboII GAAGA 4 cut(s) 37, 67, 103, 589
MhlI GDGCHC 1 cut(s) 647
MluCI AATT 8 cut(s) 141, 197, 305, 312, 427, 631, 704, 718
MlyI GAGTC 2 cut(s) 755, 884
MmeI TCCRAC 1 cut(s) 445
Mph1103I ATGCAT 1 cut(s) 250
MseI TTAA 3 cut(s) 377, 533, 939
MspA1I CMGCKG 1 cut(s) 395
MspR9I CCNGG 2 cut(s) 373, 493
MvaI CCWGG 2 cut(s) 373, 493
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 3 cut(s) 226, 411, 928
NdeII GATC 1 cut(s) 826
NheI GCTAGC 1 cut(s) 542
NlaIII CATG 5 cut(s) 193, 252, 262, 427, 842
NlaIV GGNNCC 2 cut(s) 571, 930
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 3 cut(s) 252, 262, 842
PciI ACATGT 1 cut(s) 258
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 761
PfeI GAWTC 2 cut(s) 455, 743
PkrI GCNGC 2 cut(s) 280, 541
PleI GAGTC 2 cut(s) 755, 884
PpsI GAGTC 2 cut(s) 755, 884
PscI ACATGT 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 647
Psp6I CCWGG 2 cut(s) 371, 491
PspGI CCWGG 2 cut(s) 371, 491
PspN4I GGNNCC 2 cut(s) 571, 930
PspPI GGNCC 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 2 cut(s) 699, 807
RsaNI GTAC 2 cut(s) 698, 806
SacI GAGCTC 1 cut(s) 647
SaqAI TTAA 3 cut(s) 377, 533, 939
SatI GCNGC 2 cut(s) 279, 540
Sau3AI GATC 1 cut(s) 826
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 2 cut(s) 755, 884
ScrFI CCNGG 2 cut(s) 373, 493
SduI GDGCHC 1 cut(s) 647
SfaNI GCATC 2 cut(s) 10, 313
SinI GGWCC 1 cut(s) 240
Sse9I AATT 8 cut(s) 141, 197, 305, 312, 427, 631, 704, 718
SsiI CCGC 2 cut(s) 157, 269
SspMI CTAG 1 cut(s) 543
SstI GAGCTC 1 cut(s) 647
StyD4I CCNGG 2 cut(s) 371, 491
TaaI ACNGT 4 cut(s) 70, 287, 339, 835
TaqI TCGA 4 cut(s) 618, 764, 829, 935
TasI AATT 8 cut(s) 141, 197, 305, 312, 427, 631, 704, 718
TatI WGTACW 1 cut(s) 805
TfiI GAWTC 2 cut(s) 455, 743
Tru1I TTAA 3 cut(s) 377, 533, 939
Tru9I TTAA 3 cut(s) 377, 533, 939
TscAI CASTG 4 cut(s) 350, 595, 676, 820
TseI GCWGC 2 cut(s) 278, 539
TspDTI ATGAA 4 cut(s) 88, 206, 353, 440
TspRI CASTG 4 cut(s) 350, 595, 676, 820
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 3 cut(s) 427, 631, 718
XceI RCATGY 3 cut(s) 252, 262, 842
XspI CTAG 1 cut(s) 543
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.