RchiOBHm_Chr5g0067411

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000148
Physical Location & Seq
Forward (+)
73576579 .. 73577464
886 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34313

Sequence Viewer

Length: 834 bp
ATGGTTGTATGTTTTTTGATGTGTTTGTGCTATGTGCAAATGTCAACTTTACATTGGGTTTTCAGAAACCCATTTCTCTGTTCATTAGTGGAAGGATTCCAAGCCAAGTTTATATTACTTGCAATGGCTGATGAACCTACAAGAAAGATTAGCCTGAAGGCCTTAGTAAACAGGGGGAACAAAAGAGTTATCTTTATGGAGTCTGGCCATGAATTTGTTGATGTTCTCTTAAGCTACTTGACAATCCCCATAGGAACAATTATCAAGCTTGGCCGTAACAACAGTAATTTGGCACCACTGGGAATAGGTTGCATGAACAATTTGTATGCAAGTGTTGTGAATATGGATGTGCAGCATTTCAGGACTGAAGCTTGTAGGGACATGTTGCTATGTCCTCGAAATGGAGCTGGATCGACTTTAAAGAGCCTCAAACTCAAAATTGATGACTGTGATCCTACGCAGTACTTTAAGTGCTCGAATGTGTCTTGCCGCACATCTCCGGCTAGGCTAAGCTATTACAGAAGTGTTCGCTGTTGTCGTTGTGGAAATCAAATGGACTCAAAGAGCAACCTTTTAGTTGGCTGTCTTGATGGGGTGTTTGTAAAAGGACTAGCCAGACTTATAATTAGTGATGATTTACAAGTCATGCCTGCAGTAACATCAGTAAGCTCTTCTTTGTTGATGAAGCCTGGGGTCATGGATTCAAATACTATTGAGGAGGTGACTTTGGACATTGGAGTTGATGAGGTAATTGAATATGCTAAATTTGTGTTTAGATGTAGAATTGTGTTGTCAATTTGCTTATGTGCTCATTTATATCAAAATCACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

277

Amino Acids

30.95

Weight (kDa)

8.54

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 48 - 265 1.2e-65 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 623
AccB1I GGYRCC 1 cut(s) 292
AciI CCGC 1 cut(s) 490
AclWI GGATC 2 cut(s) 418, 446
AcoI YGGCCR 2 cut(s) 205, 271
AcsI RAATTY 2 cut(s) 212, 764
AcuI CTGAAG 2 cut(s) 176, 387
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 1 cut(s) 401
AflII CTTAAG 1 cut(s) 229
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 2 cut(s) 705, 755
AjnI CCWGG 1 cut(s) 688
AluBI AGCT 6 cut(s) 234, 268, 371, 407, 513, 669
AluI AGCT 6 cut(s) 234, 268, 371, 407, 513, 669
Alw21I GWGCWC 2 cut(s) 476, 811
AlwI GGATC 2 cut(s) 418, 446
AoxI GGCC 3 cut(s) 159, 205, 271
ApeKI GCWGC 1 cut(s) 352
ApoI RAATTY 2 cut(s) 212, 764
AsuHPI GGTGA 2 cut(s) 733, 818
BalI TGGCCA 1 cut(s) 207
BanI GGYRCC 1 cut(s) 292
Bbv12I GWGCWC 2 cut(s) 476, 811
BbvI GCAGC 1 cut(s) 364
BccI CCATC 1 cut(s) 584
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 690
BfaI CTAG 2 cut(s) 504, 611
BfmI CTRYAG 1 cut(s) 651
BfrI CTTAAG 1 cut(s) 229
BisI GCNGC 2 cut(s) 353, 490
BlpI GCTNAGC 1 cut(s) 509
BlsI GCNGC 2 cut(s) 354, 491
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 1 cut(s) 690
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 690
BmrI ACTGGG 1 cut(s) 308
BmuI ACTGGG 1 cut(s) 308
Bpu1102I GCTNAGC 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 689
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse1I ACTGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 1 cut(s) 689
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 303
BseRI GAGGAG 1 cut(s) 731
BseXI GCAGC 1 cut(s) 364
BsgI GTGCAG 1 cut(s) 371
BshFI GGCC 3 cut(s) 161, 207, 273
BshNI GGYRCC 1 cut(s) 292
BsiHKAI GWGCWC 2 cut(s) 476, 811
BsiSI CCGG 1 cut(s) 500
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 3 cut(s) 161, 207, 273
Bsp1286I GDGCHC 2 cut(s) 476, 811
Bsp143I GATC 2 cut(s) 410, 451
Bsp1720I GCTNAGC 1 cut(s) 509
BspACI CCGC 1 cut(s) 490
BspANI GGCC 3 cut(s) 161, 207, 273
BspLI GGNNCC 1 cut(s) 294
BspMAI CTGCAG 1 cut(s) 655
BspPI GGATC 2 cut(s) 418, 446
BspQI GCTCTTC 1 cut(s) 676
BspT107I GGYRCC 1 cut(s) 292
BspTI CTTAAG 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 689
BssMI GATC 2 cut(s) 410, 451
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 2 cut(s) 284, 449
Bst6I CTCTTC 1 cut(s) 676
BstAFI CTTAAG 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 651
BstDEI CTNAG 2 cut(s) 163, 509
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 2 cut(s) 413, 454
BstMBI GATC 2 cut(s) 410, 451
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 688
BstSFI CTRYAG 1 cut(s) 651
BstV1I GCAGC 1 cut(s) 364
BsuRI GGCC 3 cut(s) 161, 207, 273
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 651
Csp6I GTAC 1 cut(s) 463
CviAII CATG 5 cut(s) 209, 313, 382, 646, 697
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 2 cut(s) 163, 509
DpnI GATC 2 cut(s) 412, 453
DpnII GATC 2 cut(s) 410, 451
DraI TTTAAA 1 cut(s) 420
EaeI YGGCCR 2 cut(s) 205, 271
Eam1104I CTCTTC 1 cut(s) 676
EarI CTCTTC 1 cut(s) 676
Eco147I AGGCCT 1 cut(s) 161
Eco57I CTGAAG 2 cut(s) 176, 387
EcoRII CCWGG 1 cut(s) 688
FaeI CATG 5 cut(s) 212, 316, 385, 649, 700
FalI AAGNNNNNCTT 2 cut(s) 658, 690
FaqI GGGAC 1 cut(s) 392
FatI CATG 5 cut(s) 208, 312, 381, 645, 696
Fnu4HI GCNGC 2 cut(s) 353, 490
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 2 cut(s) 353, 490
FspBI CTAG 2 cut(s) 504, 611
GluI GCNGC 2 cut(s) 353, 490
HaeIII GGCC 3 cut(s) 161, 207, 273
HapII CCGG 1 cut(s) 500
Hin1II CATG 5 cut(s) 212, 316, 385, 649, 700
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 2 cut(s) 266, 369
HinfI GANTC 4 cut(s) 96, 200, 557, 701
HpaII CCGG 1 cut(s) 500
HphI GGTGA 2 cut(s) 733, 818
Hpy166II GTNNAC 2 cut(s) 45, 169
Hpy188I TCNGA 2 cut(s) 65, 833
Hpy188III TCNNGA 2 cut(s) 361, 587
Hpy8I GTNNAC 2 cut(s) 45, 169
HpyAV CCTTC 2 cut(s) 86, 151
HpyCH4III ACNGT 2 cut(s) 284, 449
HpyCH4V TGCA 6 cut(s) 37, 122, 312, 329, 352, 653
HpyF3I CTNAG 2 cut(s) 163, 509
Hsp92II CATG 5 cut(s) 212, 316, 385, 649, 700
Kzo9I GATC 2 cut(s) 410, 451
LguI GCTCTTC 1 cut(s) 676
LmnI GCTCC 1 cut(s) 404
Lsp1109I GCAGC 1 cut(s) 364
MaeI CTAG 2 cut(s) 504, 611
MaeIII GTNAC 3 cut(s) 275, 655, 721
MalI GATC 2 cut(s) 412, 453
MboI GATC 2 cut(s) 410, 451
MboII GAAGA 1 cut(s) 663
MhlI GDGCHC 2 cut(s) 476, 811
MlsI TGGCCA 1 cut(s) 207
MluNI TGGCCA 1 cut(s) 207
MlyI GAGTC 2 cut(s) 209, 551
MnlI CCTC 5 cut(s) 405, 437, 709, 712, 739
Mox20I TGGCCA 1 cut(s) 207
MscI TGGCCA 1 cut(s) 207
MseI TTAA 3 cut(s) 230, 419, 468
Msp20I TGGCCA 1 cut(s) 207
MspCI CTTAAG 1 cut(s) 229
MspI CCGG 1 cut(s) 500
MspR9I CCNGG 1 cut(s) 690
MvaI CCWGG 1 cut(s) 690
NdeII GATC 2 cut(s) 410, 451
NlaIII CATG 5 cut(s) 212, 316, 385, 649, 700
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 721
NspI RCATGY 1 cut(s) 385
PceI AGGCCT 1 cut(s) 161
PciI ACATGT 1 cut(s) 381
PciSI GCTCTTC 1 cut(s) 676
PcsI WCGNNNNNNNCGW 1 cut(s) 535
PfeI GAWTC 2 cut(s) 96, 701
PkrI GCNGC 2 cut(s) 354, 491
PleI GAGTC 2 cut(s) 208, 551
PpsI GAGTC 2 cut(s) 208, 551
PscI ACATGT 1 cut(s) 381
PsiI TTATAA 1 cut(s) 623
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 1 cut(s) 294
PstI CTGCAG 1 cut(s) 655
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SapI GCTCTTC 1 cut(s) 676
SaqAI TTAA 3 cut(s) 230, 419, 468
SatI GCNGC 2 cut(s) 353, 490
Sau3AI GATC 2 cut(s) 410, 451
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 2 cut(s) 209, 551
ScrFI CCNGG 1 cut(s) 690
SduI GDGCHC 2 cut(s) 476, 811
SfcI CTRYAG 1 cut(s) 651
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 1 cut(s) 490
SspMI CTAG 2 cut(s) 504, 611
StuI AGGCCT 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 688
TaaI ACNGT 2 cut(s) 284, 449
TaqI TCGA 3 cut(s) 397, 413, 476
TatI WGTACW 1 cut(s) 462
TauI GCSGC 1 cut(s) 492
TfiI GAWTC 2 cut(s) 96, 701
Tru1I TTAA 3 cut(s) 230, 419, 468
Tru9I TTAA 3 cut(s) 230, 419, 468
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 5 cut(s) 72, 147, 225, 329, 698
TspRI CASTG 1 cut(s) 303
Vha464I CTTAAG 1 cut(s) 229
XapI RAATTY 2 cut(s) 212, 764
XceI RCATGY 1 cut(s) 385
XspI CTAG 2 cut(s) 504, 611
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.