Rmu_sc0002253.1_g000013

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002253.1
OG0000148
Physical Location & Seq
Reverse (-)
65801 .. 66352
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002253.1_g000013.1.cds

Sequence Viewer

Length: 552 bp
atggctgatgagtatgaggacagtactactgtcagcttgaaagccttgctgcacaagggaagcaacgaagttattttcatagagtgtggtaatgattttcttgatgttctcttcagtttcttgactttcccaatgggaacaatcatcaagcttggctgtaatcactcagtagaatcagtaccagtgcaaatagggtgcatgaaaaatttgtatgcaagtgttgagaatattgatgttcagcagtttcacaatgaggtgtgtagaaacaaattgttaagtcctcataatgcggctgaatctcattgcaaggacctcaaattgaaaattgacattggtgagtccacacagtactttctgtgcccagattggaattgcttaggtgtctccaaggatgaattacaattgagtcgattcagaggtaatttattaagtatgtataaaggaactcgttgtgataactgtggaaaaagcatggatagggagtatcacctttcctattcatcctcccctgctgatcaagataagggcatctttgtaaagggattagcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

183

Amino Acids

20.52

Weight (kDa)

5.47

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 290
AcsI RAATTY 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 97
AfaI GTAC 3 cut(s) 25, 180, 350
AgsI TTSAA 2 cut(s) 40, 322
AluBI AGCT 2 cut(s) 36, 151
AluI AGCT 2 cut(s) 36, 151
Alw26I GTCTC 1 cut(s) 388
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 2 cut(s) 347, 479
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 36
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 1 cut(s) 388
BisI GCNGC 2 cut(s) 50, 291
BlsI GCNGC 2 cut(s) 51, 292
BmcAI AGTACT 2 cut(s) 25, 350
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmsI GCATC 1 cut(s) 537
Bpu10I CCTNAGC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 387
Bse1I ACTGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 2 cut(s) 397, 500
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 362
Bsp143I GATC 1 cut(s) 514
BspACI CCGC 1 cut(s) 290
BspCNI CTCAG 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 301
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 1 cut(s) 514
BssT1I CCWWGG 1 cut(s) 387
Bst4CI ACNGT 4 cut(s) 23, 31, 348, 461
Bst6I CTCTTC 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 166, 376
BstF5I GGATG 2 cut(s) 397, 500
BstKTI GATC 1 cut(s) 517
BstMAI GTCTC 1 cut(s) 388
BstMBI GATC 1 cut(s) 514
BstSLI GKGCMC 1 cut(s) 362
BstV1I GCAGC 1 cut(s) 36
BtsCI GGATG 2 cut(s) 397, 500
BtsIMutI CAGTG 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 3 cut(s) 24, 179, 349
CviAII CATG 2 cut(s) 199, 472
CviJI RGCY 6 cut(s) 5, 36, 44, 151, 156, 293
CviKI_1 RGCY 6 cut(s) 5, 36, 44, 151, 156, 293
CviQI GTAC 3 cut(s) 24, 179, 349
DdeI CTNAG 2 cut(s) 166, 376
DpnI GATC 1 cut(s) 516
DpnII GATC 1 cut(s) 514
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 387
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 2 cut(s) 202, 475
FaiI YATR 9 cut(s) 15, 80, 200, 213, 285, 434, 438, 473, 550
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FatI CATG 2 cut(s) 198, 471
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 2 cut(s) 50, 291
FokI GGATG 2 cut(s) 404, 487
Fsp4HI GCNGC 2 cut(s) 50, 291
GluI GCNGC 2 cut(s) 50, 291
Hin1II CATG 2 cut(s) 202, 475
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 5 cut(s) 173, 296, 338, 406, 411
HphI GGTGA 2 cut(s) 347, 479
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 1 cut(s) 416
Hpy188III TCNNGA 3 cut(s) 101, 121, 518
Hpy8I GTNNAC 1 cut(s) 342
HpyCH4III ACNGT 4 cut(s) 23, 31, 348, 461
HpyCH4V TGCA 5 cut(s) 52, 187, 198, 215, 306
HpyF3I CTNAG 2 cut(s) 166, 376
Hsp92II CATG 2 cut(s) 202, 475
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 1 cut(s) 514
LpnPI CCDG 3 cut(s) 195, 375, 522
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 537
MalI GATC 1 cut(s) 516
MboI GATC 1 cut(s) 514
MboII GAAGA 1 cut(s) 103
MfeI CAATTG 1 cut(s) 401
MhlI GDGCHC 1 cut(s) 362
MluCI AATT 8 cut(s) 205, 269, 317, 324, 370, 395, 401, 421
MlyI GAGTC 2 cut(s) 347, 415
MnlI CCTC 6 cut(s) 10, 247, 291, 323, 410, 514
MseI TTAA 2 cut(s) 275, 428
MunI CAATTG 1 cut(s) 401
NdeII GATC 1 cut(s) 514
NlaIII CATG 2 cut(s) 202, 475
PfeI GAWTC 3 cut(s) 173, 296, 411
PkrI GCNGC 2 cut(s) 51, 292
PleI GAGTC 2 cut(s) 346, 414
PpsI GAGTC 2 cut(s) 346, 414
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
PspPI GGNCC 1 cut(s) 310
PspPPI RGGWCCY 1 cut(s) 310
RsaI GTAC 3 cut(s) 25, 180, 350
RsaNI GTAC 3 cut(s) 24, 179, 349
SaqAI TTAA 2 cut(s) 275, 428
SatI GCNGC 2 cut(s) 50, 291
Sau3AI GATC 1 cut(s) 514
Sau96I GGNCC 1 cut(s) 310
ScaI AGTACT 2 cut(s) 25, 350
SchI GAGTC 2 cut(s) 347, 415
SduI GDGCHC 1 cut(s) 362
SetI ASST 7 cut(s) 38, 153, 258, 315, 382, 421, 492
SfaNI GCATC 1 cut(s) 537
SinI GGWCC 1 cut(s) 310
Sse9I AATT 8 cut(s) 205, 269, 317, 324, 370, 395, 401, 421
SsiI CCGC 1 cut(s) 290
SspI AATATT 1 cut(s) 229
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 4 cut(s) 23, 31, 348, 461
TaqI TCGA 1 cut(s) 409
TasI AATT 8 cut(s) 205, 269, 317, 324, 370, 395, 401, 421
TatI WGTACW 2 cut(s) 23, 348
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 3 cut(s) 173, 296, 411
Tru1I TTAA 2 cut(s) 275, 428
Tru9I TTAA 2 cut(s) 275, 428
TscAI CASTG 1 cut(s) 189
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 4 cut(s) 67, 215, 408, 489
TspRI CASTG 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 1 cut(s) 205
ZrmI AGTACT 2 cut(s) 25, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.