MD11G1083500.v1.1

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000148
Physical Location & Seq
Reverse (-)
7064115 .. 7065649
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1083500.v1.1.491

Sequence Viewer

Length: 651 bp
ATGGCTAATACATCGGCGAACACCATTAGCTTGAAAGGCTTGGTGGACAAGGAGCGCAACCGAATTATGTTCATAGAGTCAGAAAATGATTTTATTGATGTTGTCTTGAGTTTCTTGACAATCCCCATGGGAACAATTATCAGGCTGGCACCAAATCAATCAGTACCTTTAGAAATAGGTTGTATGAAAAATTTGTATGCGAGTGTTGAGAATATGGATGTAAAGCATTTCTGGTCTAAAGCATGTAGAGACATGTTGTTATGTCCCCCGAATGGGGCCGAAGTTCATTGCAAGAACCTCAAACTGAAGATTGACCGTGGTCAACCCACACAGTACTTTATCTGCCAAAGAAGTGAATGTATAACTTATAGCAGCGATGTTCTTAGCTGTGATTGTTGTGGAGGAATGATGTATGGAGAGAGAGAACTTTCAGCGTTTCAAGACAGAGGCATCTTTGTGAAAGGACCAGCCAGACTTATAATTAGTGATGATTTACAATTGATGCCTCCTTTTACTGCGGAAAGCCTTTCTATATTTTCAGAGCTTGGAGTCATGAATGGTAATACTACTGAGGAGGTGACTTTCAATGTCGGATCTGATGAGGTAACTGAAGTATTGACATGTCTTGTGTCTTCTGCTTTTATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

217

Amino Acids

24.03

Weight (kDa)

4.75

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 7 - 212 4.7e-65 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
AccB1I GGYRCC 1 cut(s) 148
AciI CCGC 1 cut(s) 518
AclWI GGATC 1 cut(s) 601
AcsI RAATTY 1 cut(s) 190
AcuI CTGAAG 2 cut(s) 326, 630
AfaI GTAC 2 cut(s) 165, 335
AfiI CCNNNNNNNGG 3 cut(s) 272, 273, 274
AflIII ACRYGT 2 cut(s) 252, 620
AgsI TTSAA 3 cut(s) 34, 440, 586
AluBI AGCT 3 cut(s) 30, 387, 544
AluI AGCT 3 cut(s) 30, 387, 544
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 601
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 372
ApoI RAATTY 1 cut(s) 190
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 276, 464
AsuHPI GGTGA 1 cut(s) 589
AvaII GGWCC 1 cut(s) 464
BanI GGYRCC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 624
BbvI GCAGC 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 243
BisI GCNGC 1 cut(s) 373
BlsI GCNGC 1 cut(s) 374
BmcAI AGTACT 1 cut(s) 335
Bme18I GGWCC 1 cut(s) 464
BmgT120I GGNCC 2 cut(s) 276, 464
BmiI GGNNCC 2 cut(s) 150, 277
BmsI GCATC 2 cut(s) 459, 492
BoxI GACNNNNGTC 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 126, 316
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 273, 274
Bse3DI GCAATG 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 126, 316
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 3 cut(s) 272, 273, 274
BseMI GCAATG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 561
BseRI GAGGAG 1 cut(s) 587
BseXI GCAGC 1 cut(s) 384
BshFI GGCC 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 148
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 3 cut(s) 272, 273, 274
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 1 cut(s) 278
Bsp143I GATC 1 cut(s) 593
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 1 cut(s) 518
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 1 cut(s) 562
BspHI TCATGA 1 cut(s) 552
BspLI GGNNCC 2 cut(s) 150, 277
BspPI GGATC 1 cut(s) 601
BspT107I GGYRCC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 286
BssECI CCNNGG 2 cut(s) 126, 316
BssMI GATC 1 cut(s) 593
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 317, 333
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 383, 570
BstDSI CCRYGG 2 cut(s) 126, 316
BstF5I GGATG 1 cut(s) 223
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 1 cut(s) 596
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 1 cut(s) 593
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNSI RCATGY 3 cut(s) 246, 256, 624
BstPAI GACNNNNGTC 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 384
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 1 cut(s) 593
BstYI RGATCY 1 cut(s) 593
BsuRI GGCC 1 cut(s) 278
BtgI CCRYGG 2 cut(s) 126, 316
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 147
CciI TCATGA 1 cut(s) 552
CfoI GCGC 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 276, 464
Csp6I GTAC 2 cut(s) 164, 334
CviAII CATG 5 cut(s) 127, 243, 253, 553, 621
CviJI RGCY 9 cut(s) 5, 30, 39, 145, 278, 387, 470, 525, 544
CviKI_1 RGCY 9 cut(s) 5, 30, 39, 145, 278, 387, 470, 525, 544
CviQI GTAC 2 cut(s) 164, 334
DdeI CTNAG 2 cut(s) 383, 570
DpnI GATC 1 cut(s) 595
DpnII GATC 1 cut(s) 593
Eco130I CCWWGG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 464
Eco57I CTGAAG 2 cut(s) 326, 630
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 5 cut(s) 130, 246, 256, 556, 624
FaqI GGGAC 1 cut(s) 249
FatI CATG 5 cut(s) 126, 242, 252, 552, 620
Fnu4HI GCNGC 1 cut(s) 373
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 1 cut(s) 373
GlaI GCGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 373
HaeIII GGCC 1 cut(s) 278
HhaI GCGC 1 cut(s) 57
Hin1II CATG 5 cut(s) 130, 246, 256, 556, 624
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HincII GTYRAC 1 cut(s) 323
HindII GTYRAC 1 cut(s) 323
HinfI GANTC 2 cut(s) 77, 549
HphI GGTGA 1 cut(s) 589
Hpy166II GTNNAC 2 cut(s) 46, 323
Hpy188I TCNGA 4 cut(s) 82, 541, 593, 598
Hpy188III TCNNGA 4 cut(s) 106, 115, 440, 553
Hpy8I GTNNAC 2 cut(s) 46, 323
HpyCH4III ACNGT 2 cut(s) 317, 333
HpyCH4V TGCA 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 383, 570
Hsp92II CATG 5 cut(s) 130, 246, 256, 556, 624
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 593
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 5 cut(s) 127, 131, 217, 480, 484
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 2 cut(s) 459, 492
MaeIII GTNAC 2 cut(s) 577, 604
MalI GATC 1 cut(s) 595
MboI GATC 1 cut(s) 593
MboII GAAGA 2 cut(s) 319, 624
MfeI CAATTG 1 cut(s) 497
MflI RGATCY 1 cut(s) 593
MluCI AATT 5 cut(s) 63, 135, 190, 480, 497
MlyI GAGTC 2 cut(s) 86, 558
MmeI TCCRAC 1 cut(s) 571
MnlI CCTC 7 cut(s) 308, 395, 440, 516, 565, 568, 595
MslI CAYNNNNRTG 1 cut(s) 455
MunI CAATTG 1 cut(s) 497
MwoI GCNNNNNNNGC 1 cut(s) 36
NcoI CCATGG 1 cut(s) 126
NdeII GATC 1 cut(s) 593
NlaIII CATG 5 cut(s) 130, 246, 256, 556, 624
NlaIV GGNNCC 2 cut(s) 150, 277
NmuCI GTSAC 1 cut(s) 577
NspI RCATGY 3 cut(s) 246, 256, 624
PagI TCATGA 1 cut(s) 552
PciI ACATGT 2 cut(s) 252, 620
PkrI GCNGC 1 cut(s) 374
PleI GAGTC 2 cut(s) 85, 557
PpsI GAGTC 2 cut(s) 85, 557
PscI ACATGT 2 cut(s) 252, 620
PshAI GACNNNNGTC 1 cut(s) 318
PsiI TTATAA 1 cut(s) 479
PspN4I GGNNCC 2 cut(s) 150, 277
PspPI GGNCC 2 cut(s) 276, 464
PsuI RGATCY 1 cut(s) 593
RsaI GTAC 2 cut(s) 165, 335
RsaNI GTAC 2 cut(s) 164, 334
RseI CAYNNNNRTG 1 cut(s) 455
SatI GCNGC 1 cut(s) 373
Sau3AI GATC 1 cut(s) 593
Sau96I GGNCC 2 cut(s) 276, 464
ScaI AGTACT 1 cut(s) 335
SchI GAGTC 2 cut(s) 86, 558
SetI ASST 8 cut(s) 32, 169, 181, 300, 389, 546, 579, 606
SfaNI GCATC 2 cut(s) 459, 492
SinI GGWCC 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 5 cut(s) 63, 135, 190, 480, 497
SsiI CCGC 1 cut(s) 518
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 317, 333
TasI AATT 5 cut(s) 63, 135, 190, 480, 497
TatI WGTACW 1 cut(s) 333
TseFI GTSAC 1 cut(s) 577
TseI GCWGC 1 cut(s) 372
Tsp45I GTSAC 1 cut(s) 577
TspDTI ATGAA 4 cut(s) 61, 200, 275, 569
VpaK11BI GGWCC 1 cut(s) 464
XapI RAATTY 1 cut(s) 190
XceI RCATGY 3 cut(s) 246, 256, 624
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.