Rh6AG225700

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000148
Physical Location & Seq
Reverse (-)
40668939 .. 40669244
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG225700.1

Sequence Viewer

Length: 306 bp
ATGAATGAGGAAGACACCATTTCTGTTAAGCTTATTATTTGCAAATCTCAGAAGATTGTTTGTTATGCAGAAGCAGGGGAGGATTTTGTCAATTTACTTTTCAGTTTCTTGACCGTTCCACTTGGGTTTATAATAAAACAGATCCAGGATAGGTCGTCCTCTTTGAAAGGAAGCATTGAGCATTTGAGCAGCTGTACAAGAGTGTCGAGGATCTTGATGATGAATTCTTCAAATCAAATTACCAGAAGGAAATTTTACTCAATCCGAATCTTTACCCTGGTTTTTGCTATGAGAACCGTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

101

Amino Acids

11.61

Weight (kDa)

9.45

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 2 - 76 1.6e-17 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 131
AclWI GGATC 2 cut(s) 136, 218
AcsI RAATTY 2 cut(s) 223, 251
AfaI GTAC 1 cut(s) 196
AgsI TTSAA 2 cut(s) 166, 231
AjnI CCWGG 2 cut(s) 144, 276
AluBI AGCT 2 cut(s) 31, 192
AluI AGCT 2 cut(s) 31, 192
AlwI GGATC 2 cut(s) 136, 218
ApeKI GCWGC 1 cut(s) 189
ApoI RAATTY 2 cut(s) 223, 251
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 201
BciT130I CCWGG 2 cut(s) 146, 278
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
Bme1390I CCNGG 2 cut(s) 146, 278
BmrFI CCNGG 2 cut(s) 146, 278
BpiI GAAGAC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 276
BseBI CCWGG 2 cut(s) 146, 278
BseDI CCNNGG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 194
Bsp143I GATC 2 cut(s) 141, 210
BspCNI CTCAG 1 cut(s) 61
BspPI GGATC 2 cut(s) 136, 218
BsrGI TGTACA 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 141, 210
Bst2UI CCWGG 2 cut(s) 146, 278
Bst4CI ACNGT 2 cut(s) 115, 298
BstAUI TGTACA 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 2 cut(s) 144, 213
BstMBI GATC 2 cut(s) 141, 210
BstNI CCWGG 2 cut(s) 146, 278
BstSCI CCNGG 2 cut(s) 144, 276
BstV1I GCAGC 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 2 cut(s) 141, 210
BstYI RGATCY 2 cut(s) 141, 210
Csp6I GTAC 1 cut(s) 195
CviJI RGCY 2 cut(s) 31, 192
CviKI_1 RGCY 2 cut(s) 31, 192
CviQI GTAC 1 cut(s) 195
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 143, 212
DpnII GATC 2 cut(s) 141, 210
EcoRI GAATTC 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 144, 276
FaiI YATR 3 cut(s) 66, 131, 290
Fnu4HI GCNGC 1 cut(s) 190
Fsp4HI GCNGC 1 cut(s) 190
GluI GCNGC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 1 cut(s) 267
Hpy188I TCNGA 2 cut(s) 51, 266
Hpy188III TCNNGA 2 cut(s) 109, 214
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 2 cut(s) 115, 298
HpyCH4V TGCA 2 cut(s) 42, 68
HpyF3I CTNAG 1 cut(s) 48
Kzo9I GATC 2 cut(s) 141, 210
LpnPI CCDG 6 cut(s) 60, 131, 158, 256, 263, 290
Lsp1109I GCAGC 1 cut(s) 201
MalI GATC 2 cut(s) 143, 212
MboI GATC 2 cut(s) 141, 210
MboII GAAGA 3 cut(s) 23, 64, 219
MflI RGATCY 2 cut(s) 141, 210
MluCI AATT 4 cut(s) 91, 223, 237, 251
MnlI CCTC 3 cut(s) 73, 169, 201
MseI TTAA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 146, 278
MvaI CCWGG 2 cut(s) 146, 278
NdeII GATC 2 cut(s) 141, 210
PfeI GAWTC 1 cut(s) 267
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 1 cut(s) 191
PsiI TTATAA 1 cut(s) 131
Psp6I CCWGG 2 cut(s) 144, 276
PspGI CCWGG 2 cut(s) 144, 276
PsuI RGATCY 2 cut(s) 141, 210
PvuII CAGCTG 1 cut(s) 192
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 2 cut(s) 141, 210
ScrFI CCNGG 2 cut(s) 146, 278
SetI ASST 3 cut(s) 33, 155, 194
Sse9I AATT 4 cut(s) 91, 223, 237, 251
StyD4I CCNGG 2 cut(s) 144, 276
TaaI ACNGT 2 cut(s) 115, 298
TaqI TCGA 1 cut(s) 206
TasI AATT 4 cut(s) 91, 223, 237, 251
TatI WGTACW 1 cut(s) 194
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseI GCWGC 1 cut(s) 189
TspDTI ATGAA 2 cut(s) 17, 236
XapI RAATTY 2 cut(s) 223, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.