MD11G1083400.v1.1

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000148
Physical Location & Seq
Reverse (-)
7062881 .. 7064113
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1083400.v1.1.491

Sequence Viewer

Length: 714 bp
ATGGTTTGTTATGCAGAAGTCGGGGAGGATTTTGTGAATTTACTCCTCGGTTTCCTAACTATTCCACTGGGTTTCATCGTAAACAAAATGCGTGATTGCTCATTAAAAGGATGCATTAGTCAGTTGTTCAAGAGTGTCCAAGATCTTGACAATCGCTACATGAAGTCAAACTACCACAAAGAAATACTACTCAGCCCCAAGCTTGCCCCCGGTGTTTGCCATGACAACCATCTCTTAGGAACTGAGGAGGCCACATTTTATTATGCAAGTAACCGTGGCTTGCTGTCTACTGATAAAACTCTTCTCGCTTCTCGTATTTCAGCTGGGTTTTCGTCTTTTGGAGGAAGTGTTTTCGGAACAAGTGATGTTGAAAGTTCTATCAAGTCAATGAAAGTCATGGGTCCCAAATCCTACCAAGATCAAGAAAAAGGAGTTCAAGGCCAAGGATTTTTAGAACCGGCGATGTTCACAGTAACTGACGATTTGATCATAAGACCTATATCTCTAATCTTTGGCCTGTCTCTCCTGAATGAATTGAAGGTGCCTTCGACTGACATTGAAGTGAAAATCGTGCATGTGGGAAAAGAGGAGGCTTTGCGTCTTTTGGTGGCTTCTTTTGTTTGTGACTCTGCGCTAACCAACGTCTTCATTAGGGAGCCAAAGCAGAACAAAAGGCCAAAGCAGAACAAAAGGCCAAAGCAAGAACAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

238

Amino Acids

26.3

Weight (kDa)

8.2

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 2 - 196 1.4e-34 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 541
AccI GTMKAC 1 cut(s) 287
AcsI RAATTY 1 cut(s) 37
AgsI TTSAA 5 cut(s) 130, 371, 437, 538, 560
AluBI AGCT 2 cut(s) 202, 323
AluI AGCT 2 cut(s) 202, 323
Alw26I GTCTC 1 cut(s) 525
AlwNI CAGNNNCTG 1 cut(s) 476
AoxI GGCC 5 cut(s) 249, 439, 514, 674, 692
ApoI RAATTY 1 cut(s) 37
AspLEI GCGC 1 cut(s) 634
AspS9I GGNCC 1 cut(s) 401
AsuC2I CCSGG 1 cut(s) 210
AvaII GGWCC 1 cut(s) 401
BanI GGYRCC 1 cut(s) 541
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BbsI GAAGAC 1 cut(s) 637
BccI CCATC 1 cut(s) 237
BclI TGATCA 1 cut(s) 486
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 525
BglII AGATCT 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 4 cut(s) 402, 403, 543, 657
BmrFI CCNGG 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 637
BpuMI CCSGG 1 cut(s) 210
BsaJI CCNNGG 4 cut(s) 46, 208, 274, 442
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bse118I RCCGGY 1 cut(s) 457
Bse1I ACTGG 1 cut(s) 72
BseDI CCNNGG 4 cut(s) 46, 208, 274, 442
BseGI GGATG 1 cut(s) 116
BseMII CTCAG 2 cut(s) 205, 234
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 3 cut(s) 35, 260, 602
BseYI CCCAGC 1 cut(s) 323
BshFI GGCC 5 cut(s) 251, 441, 516, 676, 694
BshNI GGYRCC 1 cut(s) 541
BsiSI CCGG 2 cut(s) 210, 458
BslFI GGGAC 1 cut(s) 387
BsmAI GTCTC 1 cut(s) 525
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 5 cut(s) 251, 441, 516, 676, 694
Bsp143I GATC 3 cut(s) 142, 418, 486
BspANI GGCC 5 cut(s) 251, 441, 516, 676, 694
BspCNI CTCAG 2 cut(s) 204, 235
BspLI GGNNCC 4 cut(s) 402, 403, 543, 657
BspT107I GGYRCC 1 cut(s) 541
BsrFI RCCGGY 1 cut(s) 457
BsrI ACTGG 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 457
BssECI CCNNGG 4 cut(s) 46, 208, 274, 442
BssMI GATC 3 cut(s) 142, 418, 486
BssT1I CCWWGG 1 cut(s) 442
Bst4CI ACNGT 2 cut(s) 275, 472
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 204, 281
BstDEI CTNAG 3 cut(s) 191, 235, 243
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 1 cut(s) 116
BstHHI GCGC 1 cut(s) 634
BstKTI GATC 3 cut(s) 145, 421, 489
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 3 cut(s) 142, 418, 486
BstNSI RCATGY 1 cut(s) 578
BstSCI CCNGG 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 637
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 5 cut(s) 251, 441, 516, 676, 694
BtgI CCRYGG 1 cut(s) 274
BtgZI GCGATG 1 cut(s) 476
BtsCI GGATG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 2 cut(s) 204, 281
CaiI CAGNNNCTG 1 cut(s) 476
CfoI GCGC 1 cut(s) 634
Cfr10I RCCGGY 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 401
CseI GACGC 1 cut(s) 587
CviAII CATG 4 cut(s) 160, 221, 397, 575
DdeI CTNAG 3 cut(s) 191, 235, 243
DpnI GATC 3 cut(s) 144, 420, 488
DpnII GATC 3 cut(s) 142, 418, 486
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 4 cut(s) 163, 224, 400, 578
FaiI YATR 8 cut(s) 12, 161, 222, 264, 398, 491, 500, 576
FaqI GGGAC 1 cut(s) 387
FatI CATG 4 cut(s) 159, 220, 396, 574
FbaI TGATCA 1 cut(s) 486
FblI GTMKAC 1 cut(s) 287
FokI GGATG 1 cut(s) 123
GlaI GCGC 1 cut(s) 633
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 5 cut(s) 251, 441, 516, 676, 694
HapII CCGG 2 cut(s) 210, 458
HgaI GACGC 1 cut(s) 587
HhaI GCGC 1 cut(s) 634
Hin1II CATG 4 cut(s) 163, 224, 400, 578
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 1 cut(s) 626
HpaII CCGG 2 cut(s) 210, 458
Hpy166II GTNNAC 3 cut(s) 82, 288, 468
Hpy188I TCNGA 1 cut(s) 356
Hpy188III TCNNGA 4 cut(s) 130, 146, 422, 526
Hpy8I GTNNAC 3 cut(s) 82, 288, 468
HpyAV CCTTC 2 cut(s) 532, 555
HpyCH4III ACNGT 2 cut(s) 275, 472
HpyCH4IV ACGT 1 cut(s) 642
HpyCH4V TGCA 4 cut(s) 14, 114, 266, 574
HpyF3I CTNAG 3 cut(s) 191, 235, 243
HpySE526I ACGT 1 cut(s) 642
Hsp92II CATG 4 cut(s) 163, 224, 400, 578
HspAI GCGC 1 cut(s) 632
KflI GGGWCCC 1 cut(s) 401
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 3 cut(s) 142, 418, 486
LmnI GCTCC 1 cut(s) 655
LpnPI CCDG 6 cut(s) 53, 223, 309, 471, 530, 539
LweI GCATC 1 cut(s) 101
MaeII ACGT 1 cut(s) 642
MaeIII GTNAC 3 cut(s) 269, 472, 623
MalI GATC 3 cut(s) 144, 420, 488
MboI GATC 3 cut(s) 142, 418, 486
MboII GAAGA 2 cut(s) 293, 637
MflI RGATCY 1 cut(s) 142
MluCI AATT 2 cut(s) 37, 533
MlyI GAGTC 1 cut(s) 620
MnlI CCTC 7 cut(s) 19, 56, 238, 241, 335, 580, 583
Mph1103I ATGCAT 1 cut(s) 116
MseI TTAA 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 560
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 2 cut(s) 210, 458
MspR9I CCNGG 1 cut(s) 210
NciI CCSGG 1 cut(s) 210
NdeII GATC 3 cut(s) 142, 418, 486
NlaIII CATG 4 cut(s) 163, 224, 400, 578
NlaIV GGNNCC 4 cut(s) 402, 403, 543, 657
NmuCI GTSAC 1 cut(s) 623
NsiI ATGCAT 1 cut(s) 116
NspI RCATGY 1 cut(s) 578
PleI GAGTC 1 cut(s) 620
PpsI GAGTC 1 cut(s) 620
PpuMI RGGWCCY 1 cut(s) 401
Psp5II RGGWCCY 1 cut(s) 401
PspFI CCCAGC 1 cut(s) 323
PspN4I GGNNCC 4 cut(s) 402, 403, 543, 657
PspPI GGNCC 1 cut(s) 401
PspPPI RGGWCCY 1 cut(s) 401
PstNI CAGNNNCTG 1 cut(s) 476
PsuI RGATCY 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 560
SaqAI TTAA 1 cut(s) 104
Sau3AI GATC 3 cut(s) 142, 418, 486
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 1 cut(s) 620
ScrFI CCNGG 1 cut(s) 210
SetI ASST 5 cut(s) 204, 325, 499, 543, 645
SfaNI GCATC 1 cut(s) 101
SinI GGWCC 1 cut(s) 401
SmiMI CAYNNNNRTG 1 cut(s) 560
Sse9I AATT 2 cut(s) 37, 533
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 2 cut(s) 275, 472
TaiI ACGT 1 cut(s) 645
TaqI TCGA 1 cut(s) 548
TasI AATT 2 cut(s) 37, 533
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 1 cut(s) 623
Tsp45I GTSAC 1 cut(s) 623
TspDTI ATGAA 5 cut(s) 64, 176, 404, 546, 637
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 1 cut(s) 37
XceI RCATGY 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 287
Zsp2I ATGCAT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.