Prupe.6G063800_v2.0.a1

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000148
Physical Location & Seq
Reverse (-)
4407561 .. 4408929
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G063800.2

Sequence Viewer

Length: 537 bp
ATGGCTATCAGCTTGAAGGCCTTGGTGGAAAAGAGAAGTAACAAAGTTATCTTCATAGAGTCTGATAATGATTTTGTTGATGTTCTCTTCAGTTTCATGACAATCCCAATGGGAACAATTATCAGGCGTGCGTGTCAAAATTCGGTACCACTGGAAATAGGTTGCATCAAAAATCTGTATGCAAGTGTTGAGAATGCTGATAAACGTCTTTTCCAGACTAAAGGATGTAGAGAGATGTTGCTACGTCCCCGCAACGGGGTTCAATCCTATTGCGAGAATCTCAAGTTGAAAATTAACAATGGTGATCCCACTCCCACACGGTACTTTTTTTGCTCCAGGGCTTGCACCAGCAGTCATAAATTATTCAGTCATTACGAAGATGTTCTCTGTGAGTGTGGAGAACCCATGAATCGTGAGATGTCTCTTTCAGTGGGAAAGGAGGTGAGAGTAGGAGGTTTGCACAAAGTTCCAATGTGGGACTTTGTGCAAGTCGTCGTGGTGGCGACACGTGTCCTGGGGATTAGGTTTGGCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

179

Amino Acids

20.15

Weight (kDa)

8.95

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 145
AccB1I GGYRCC 1 cut(s) 145
AciI CCGC 1 cut(s) 250
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 73
AcvI CACGTG 1 cut(s) 509
AfaI GTAC 2 cut(s) 147, 323
AfiI CCNNNNNNNGG 3 cut(s) 254, 255, 256
AflIII ACRYGT 2 cut(s) 506, 508
AgsI TTSAA 3 cut(s) 16, 263, 289
AjnI CCWGG 2 cut(s) 335, 513
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 1 cut(s) 299
AoxI GGCC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 139
Asp700I GAANNNNTTC 1 cut(s) 381
Asp718I GGTACC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 314, 454
BanI GGYRCC 1 cut(s) 145
BbrPI CACGTG 1 cut(s) 509
BciT130I CCWGG 2 cut(s) 337, 515
BcoDI GTCTC 1 cut(s) 426
Bme1390I CCNGG 2 cut(s) 337, 515
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 337, 515
BmsI GCATC 1 cut(s) 174
BoxI GACNNNNGTC 1 cut(s) 509
BpmI CTGGAG 1 cut(s) 319
BpuEI CTTGAG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 509
BsaJI CCNNGG 3 cut(s) 21, 336, 514
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 255, 256
Bse1I ACTGG 1 cut(s) 156
BseBI CCWGG 2 cut(s) 337, 515
BseDI CCNNGG 3 cut(s) 21, 336, 514
BseGI GGATG 1 cut(s) 230
BseLI CCNNNNNNNGG 3 cut(s) 254, 255, 256
BseNI ACTGG 1 cut(s) 156
BshFI GGCC 1 cut(s) 20
BshNI GGYRCC 1 cut(s) 145
BslFI GGGAC 2 cut(s) 231, 491
BslI CCNNNNNNNGG 3 cut(s) 254, 255, 256
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 2 cut(s) 231, 491
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 1 cut(s) 250
BspANI GGCC 1 cut(s) 20
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 299
BspT107I GGYRCC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 3 cut(s) 21, 336, 514
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 337, 515
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 509
BstC8I GCNNGC 2 cut(s) 129, 343
BstF5I GGATG 1 cut(s) 230
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 1 cut(s) 304
BstNI CCWGG 2 cut(s) 337, 515
BstPAI GACNNNNGTC 1 cut(s) 509
BstSCI CCNGG 2 cut(s) 335, 513
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 230
BtsIMutI CAGTG 2 cut(s) 149, 435
Cac8I GCNNGC 2 cut(s) 129, 343
CciI TCATGA 1 cut(s) 96
Csp6I GTAC 2 cut(s) 146, 322
CviAII CATG 2 cut(s) 97, 406
CviJI RGCY 4 cut(s) 5, 12, 20, 341
CviKI_1 RGCY 4 cut(s) 5, 12, 20, 341
CviQI GTAC 2 cut(s) 146, 322
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 21
Eco147I AGGCCT 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 73
Eco72I CACGTG 1 cut(s) 509
EcoRII CCWGG 2 cut(s) 335, 513
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 2 cut(s) 100, 409
FaiI YATR 5 cut(s) 56, 98, 180, 357, 407
FaqI GGGAC 2 cut(s) 231, 491
FatI CATG 2 cut(s) 96, 405
FauI CCCGC 1 cut(s) 257
FokI GGATG 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 319
HaeIII GGCC 1 cut(s) 20
Hin1II CATG 2 cut(s) 100, 409
HinfI GANTC 3 cut(s) 59, 277, 409
HphI GGTGA 2 cut(s) 314, 454
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 3 cut(s) 97, 214, 413
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4IV ACGT 3 cut(s) 205, 244, 508
HpyCH4V TGCA 5 cut(s) 165, 182, 345, 460, 487
HpySE526I ACGT 3 cut(s) 205, 244, 508
Hsp92II CATG 2 cut(s) 100, 409
KpnI GGTACC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 8 cut(s) 109, 137, 227, 322, 349, 361, 500, 527
LweI GCATC 1 cut(s) 174
MaeII ACGT 3 cut(s) 205, 244, 508
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 3 cut(s) 43, 79, 389
MluCI AATT 4 cut(s) 117, 139, 291, 359
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 2 cut(s) 433, 446
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 337, 515
Mva1269I GAATGC 1 cut(s) 199
MvaI CCWGG 2 cut(s) 337, 515
NdeII GATC 1 cut(s) 304
NlaIII CATG 2 cut(s) 100, 409
NlaIV GGNNCC 1 cut(s) 147
PagI TCATGA 1 cut(s) 96
PceI AGGCCT 1 cut(s) 20
PctI GAATGC 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 2 cut(s) 277, 409
PleI GAGTC 1 cut(s) 67
PmaCI CACGTG 1 cut(s) 509
PmlI CACGTG 1 cut(s) 509
PpsI GAGTC 1 cut(s) 67
Ppu21I YACGTR 1 cut(s) 509
PshAI GACNNNNGTC 1 cut(s) 509
Psp6I CCWGG 2 cut(s) 335, 513
PspCI CACGTG 1 cut(s) 509
PspGI CCWGG 2 cut(s) 335, 513
PspN4I GGNNCC 1 cut(s) 147
RsaI GTAC 2 cut(s) 147, 323
RsaNI GTAC 2 cut(s) 146, 322
SaqAI TTAA 1 cut(s) 294
Sau3AI GATC 1 cut(s) 304
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 2 cut(s) 337, 515
SetI ASST 8 cut(s) 14, 163, 208, 247, 444, 457, 511, 527
SfaNI GCATC 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 4 cut(s) 117, 139, 291, 359
SseBI AGGCCT 1 cut(s) 20
SsiI CCGC 1 cut(s) 250
StuI AGGCCT 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 335, 513
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 321
TaiI ACGT 3 cut(s) 208, 247, 511
TasI AATT 4 cut(s) 117, 139, 291, 359
TfiI GAWTC 2 cut(s) 277, 409
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 2 cut(s) 156, 435
TspDTI ATGAA 3 cut(s) 43, 85, 422
TspRI CASTG 2 cut(s) 156, 435
XapI RAATTY 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.