Rmu_sc0022825.1_g000001

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022825.1
OG0000148
Physical Location & Seq
Reverse (-)
2 .. 565
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022825.1_g000001.1.cds

Sequence Viewer

Length: 564 bp
atggctcagaaagtaccagctgagaagaacattagcttgaaggcgttggtggacaaggggagtaagagagttatcattggagaggcggataatgattttattgatgttcttttcagtttcttgacaataccgacgggaaaaattgtcaggcttgcctgggaccattccacaccactggaaataggatgcatgaacaagttgtatcagagtattgagaagcttgatgtgcaggttttcaggtctaatgcatgtagagacatgttgttacttccgcacactgcagctaactgtcattgcaagaaccttaaattgaaaattattgacgatgctgagccaacacggtttaagtgcgctaatatttatgcttcttctcagtcctactggttaagttattatttaactgttccttgcccttcctgctcaaatgccatgaattctgaagtatatctttcagagggtgattctcaagttggaggggtctttgcaaaagagcgagccagggttataataactgatgattttcaagtgattcccccattcagtgcagctagcatttccttgttt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

188

Amino Acids

20.92

Weight (kDa)

6.81

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 506
Acc36I ACCTGC 1 cut(s) 220
AciI CCGC 2 cut(s) 86, 272
AcsI RAATTY 1 cut(s) 433
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 1 cut(s) 15
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 3 cut(s) 40, 313, 524
AjnI CCWGG 2 cut(s) 155, 497
AluBI AGCT 5 cut(s) 20, 36, 220, 284, 548
AluI AGCT 5 cut(s) 20, 36, 220, 284, 548
Alw26I GTCTC 1 cut(s) 249
ApeKI GCWGC 2 cut(s) 281, 545
ApoI RAATTY 1 cut(s) 433
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 470
AsuNHI GCTAGC 1 cut(s) 548
AvaII GGWCC 1 cut(s) 160
BbvI GCAGC 2 cut(s) 293, 557
BciT130I CCWGG 2 cut(s) 157, 499
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 549
BfmI CTRYAG 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 2 cut(s) 282, 546
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 2 cut(s) 283, 547
Bme1390I CCNGG 2 cut(s) 157, 499
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 2 cut(s) 157, 499
BmsI GCATC 2 cut(s) 176, 316
BmtI GCTAGC 1 cut(s) 552
Bpu1102I GCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 450
BsaJI CCNNGG 2 cut(s) 156, 498
Bse1I ACTGG 2 cut(s) 180, 386
Bse3DI GCAATG 1 cut(s) 292
BseBI CCWGG 2 cut(s) 157, 499
BseDI CCNNGG 2 cut(s) 156, 498
BseGI GGATG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 4 cut(s) 12, 20, 321, 386
BseNI ACTGG 2 cut(s) 180, 386
BseXI GCAGC 2 cut(s) 293, 557
BsgI GTGCAG 2 cut(s) 248, 564
BslFI GGGAC 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 173
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 2 cut(s) 86, 272
BspCNI CTCAG 4 cut(s) 13, 19, 322, 385
BspLI GGNNCC 1 cut(s) 161
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 220
BspOI GCTAGC 1 cut(s) 552
BsrDI GCAATG 1 cut(s) 292
BsrI ACTGG 2 cut(s) 180, 386
BssECI CCNNGG 2 cut(s) 156, 498
Bst2UI CCWGG 2 cut(s) 157, 499
Bst4CI ACNGT 3 cut(s) 290, 342, 403
BstC8I GCNNGC 3 cut(s) 153, 495, 550
BstDEI CTNAG 4 cut(s) 6, 21, 330, 372
BstF5I GGATG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 353
BstMAI GTCTC 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 226, 417
BstNI CCWGG 2 cut(s) 157, 499
BstNSI RCATGY 2 cut(s) 252, 262
BstSCI CCNGG 2 cut(s) 155, 497
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 293, 557
BstXI CCANNNNNNTGG 1 cut(s) 175
BtsCI GGATG 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 3 cut(s) 173, 276, 547
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 3 cut(s) 153, 495, 550
CfoI GCGC 1 cut(s) 353
Cfr13I GGNCC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 14
CviAII CATG 4 cut(s) 190, 249, 259, 430
CviJI RGCY 9 cut(s) 5, 20, 36, 151, 220, 284, 334, 497, 548
CviKI_1 RGCY 9 cut(s) 5, 20, 36, 151, 220, 284, 334, 497, 548
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 4 cut(s) 6, 21, 330, 372
EciI GGCGGA 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 459
EcoRI GAATTC 1 cut(s) 433
EcoRII CCWGG 2 cut(s) 155, 497
EcoT22I ATGCAT 2 cut(s) 191, 250
FaeI CATG 4 cut(s) 193, 252, 262, 433
FaiI YATR 7 cut(s) 191, 250, 260, 363, 431, 445, 506
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 1 cut(s) 173
FatI CATG 4 cut(s) 189, 248, 258, 429
Fnu4HI GCNGC 2 cut(s) 282, 546
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 282, 546
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 352
GluI GCNGC 2 cut(s) 282, 546
HhaI GCGC 1 cut(s) 353
Hin1II CATG 4 cut(s) 193, 252, 262, 433
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 2 cut(s) 461, 529
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 4 cut(s) 9, 207, 439, 454
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 34, 423
HpyCH4III ACNGT 3 cut(s) 290, 342, 403
HpyCH4V TGCA 7 cut(s) 189, 229, 248, 281, 297, 485, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 417
HpyF3I CTNAG 4 cut(s) 6, 21, 330, 372
Hsp92II CATG 4 cut(s) 193, 252, 262, 433
HspAI GCGC 1 cut(s) 351
Lsp1109I GCAGC 2 cut(s) 293, 557
LweI GCATC 2 cut(s) 176, 316
MaeI CTAG 1 cut(s) 549
MaeIII GTNAC 1 cut(s) 264
MboII GAAGA 2 cut(s) 37, 360
MluCI AATT 4 cut(s) 141, 308, 315, 433
MmeI TCCRAC 1 cut(s) 451
MnlI CCTC 3 cut(s) 76, 448, 467
Mph1103I ATGCAT 2 cut(s) 191, 250
MseI TTAA 4 cut(s) 306, 345, 386, 398
MspA1I CMGCKG 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 157, 499
MvaI CCWGG 2 cut(s) 157, 499
MwoI GCNNNNNNNGC 2 cut(s) 226, 417
NheI GCTAGC 1 cut(s) 548
NlaIII CATG 4 cut(s) 193, 252, 262, 433
NlaIV GGNNCC 1 cut(s) 161
NsiI ATGCAT 2 cut(s) 191, 250
NspI RCATGY 2 cut(s) 252, 262
PciI ACATGT 1 cut(s) 258
PfeI GAWTC 2 cut(s) 461, 529
PkrI GCNGC 2 cut(s) 283, 547
PscI ACATGT 1 cut(s) 258
PsiI TTATAA 1 cut(s) 506
Psp6I CCWGG 2 cut(s) 155, 497
PspGI CCWGG 2 cut(s) 155, 497
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 1 cut(s) 160
PstI CTGCAG 1 cut(s) 283
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SaqAI TTAA 4 cut(s) 306, 345, 386, 398
SatI GCNGC 2 cut(s) 282, 546
Sau96I GGNCC 1 cut(s) 160
ScrFI CCNGG 2 cut(s) 157, 499
SetI ASST 8 cut(s) 22, 38, 222, 234, 242, 286, 306, 550
SfaNI GCATC 2 cut(s) 176, 316
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
Sse9I AATT 4 cut(s) 141, 308, 315, 433
SsiI CCGC 2 cut(s) 86, 272
SspI AATATT 1 cut(s) 358
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 155, 497
TaaI ACNGT 3 cut(s) 290, 342, 403
TasI AATT 4 cut(s) 141, 308, 315, 433
TfiI GAWTC 2 cut(s) 461, 529
Tru1I TTAA 4 cut(s) 306, 345, 386, 398
Tru9I TTAA 4 cut(s) 306, 345, 386, 398
TscAI CASTG 3 cut(s) 180, 283, 547
TseI GCWGC 2 cut(s) 281, 545
TspDTI ATGAA 2 cut(s) 206, 446
TspRI CASTG 3 cut(s) 180, 283, 547
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 1 cut(s) 433
XceI RCATGY 2 cut(s) 252, 262
XspI CTAG 1 cut(s) 549
Zsp2I ATGCAT 2 cut(s) 191, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.