Rroxscaffold_1G00013440

Protein of unknown function (DUF674)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
16512548 .. 16513444
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013440.1

Sequence Viewer

Length: 453 bp
ATGGATGCTAGTACTACTGAGGAGCTGGCTTTCAATGTAGGAGTTGGTGAGGTTTTGGAAATGCTTGTATGCTCATTAGTATCAAAGATGCCTTTGTCAGAAACTCTTCTGAAGCCTAAATCAAAACCAAACTTGAGCAATGAATATCCAAATCAAGGAATATGTATTGAACCTCAAATGGTAGGAAGCTGGATGAATGAGGAAGGAAACTTGAAGCTTATGGTTAGCAAATCTCAGAAGATTGTTTGCTATGCAGAAGCAGGGGAGGATTCTCTCAATTTACTTTTCAATTTCTTGACCGTTCCATTCAGGTTTATAATAAAACAGATCCAGGATAGCTCATCCTCTTTGAAAGGAAGCATTGAGCAGCTGTACAAGAGTGTCCAGGATCTTGATGATGAATTCTTCAAATCAAATTACCAGAAGGAAATTTTACTCAATCCGAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

16.88

Weight (kDa)

4.72

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 2 - 143 3.6e-30 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
AclWI GGATC 2 cut(s) 322, 396
AcsI RAATTY 2 cut(s) 401, 429
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 2 cut(s) 13, 374
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 6 cut(s) 34, 170, 214, 289, 352, 409
AjnI CCWGG 2 cut(s) 330, 384
AluBI AGCT 6 cut(s) 25, 189, 217, 339, 370, 448
AluI AGCT 6 cut(s) 25, 189, 217, 339, 370, 448
AlwI GGATC 2 cut(s) 322, 396
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 2 cut(s) 401, 429
Asp700I GAANNNNTTC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 59
BbvI GCAGC 1 cut(s) 379
BciT130I CCWGG 2 cut(s) 332, 386
BfaI CTAG 1 cut(s) 9
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 332, 386
BmrFI CCNGG 2 cut(s) 332, 386
BmsI GCATC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 145
BseBI CCWGG 2 cut(s) 332, 386
BseGI GGATG 3 cut(s) 10, 198, 341
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 9, 248
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 155
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 2 cut(s) 327, 388
BspCNI CTCAG 2 cut(s) 10, 247
BspPI GGATC 2 cut(s) 322, 396
BsrDI GCAATG 1 cut(s) 145
BsrGI TGTACA 1 cut(s) 372
BssMI GATC 2 cut(s) 327, 388
Bst2UI CCWGG 2 cut(s) 332, 386
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 18, 234
BstF5I GGATG 3 cut(s) 10, 198, 341
BstKTI GATC 2 cut(s) 330, 391
BstMBI GATC 2 cut(s) 327, 388
BstNI CCWGG 2 cut(s) 332, 386
BstSCI CCNGG 2 cut(s) 330, 384
BstV1I GCAGC 1 cut(s) 379
BstX2I RGATCY 2 cut(s) 327, 388
BstYI RGATCY 2 cut(s) 327, 388
BtsCI GGATG 3 cut(s) 10, 198, 341
Cac8I GCNNGC 1 cut(s) 27
Csp6I GTAC 2 cut(s) 12, 373
CviJI RGCY 8 cut(s) 25, 29, 115, 189, 217, 339, 370, 448
CviKI_1 RGCY 8 cut(s) 25, 29, 115, 189, 217, 339, 370, 448
CviQI GTAC 2 cut(s) 12, 373
DdeI CTNAG 2 cut(s) 18, 234
DpnI GATC 2 cut(s) 329, 390
DpnII GATC 2 cut(s) 327, 388
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 401
EcoRII CCWGG 2 cut(s) 330, 384
FaiI YATR 5 cut(s) 70, 163, 221, 252, 317
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 3 cut(s) 17, 205, 328
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 1 cut(s) 9
GluI GCNGC 1 cut(s) 368
HindIII AAGCTT 2 cut(s) 215, 446
HinfI GANTC 1 cut(s) 269
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 4 cut(s) 100, 111, 237, 444
Hpy188III TCNNGA 2 cut(s) 295, 392
HpyAV CCTTC 2 cut(s) 197, 418
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4V TGCA 1 cut(s) 254
HpyF3I CTNAG 2 cut(s) 18, 234
Kzo9I GATC 2 cut(s) 327, 388
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 9 cut(s) 11, 175, 246, 295, 317, 344, 371, 398, 434
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 1 cut(s) 78
MaeI CTAG 1 cut(s) 9
MalI GATC 2 cut(s) 329, 390
MboI GATC 2 cut(s) 327, 388
MboII GAAGA 3 cut(s) 98, 250, 397
MflI RGATCY 2 cut(s) 327, 388
MluCI AATT 5 cut(s) 277, 289, 401, 415, 429
MnlI CCTC 6 cut(s) 13, 43, 183, 193, 259, 355
MroXI GAANNNNTTC 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 370
MspR9I CCNGG 2 cut(s) 332, 386
MvaI CCWGG 2 cut(s) 332, 386
NdeII GATC 2 cut(s) 327, 388
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 269
PfoI TCCNGGA 2 cut(s) 330, 384
PkrI GCNGC 1 cut(s) 369
PsiI TTATAA 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 330, 384
PspGI CCWGG 2 cut(s) 330, 384
PsuI RGATCY 2 cut(s) 327, 388
PvuII CAGCTG 1 cut(s) 370
RsaI GTAC 2 cut(s) 13, 374
RsaNI GTAC 2 cut(s) 12, 373
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 2 cut(s) 327, 388
ScaI AGTACT 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 332, 386
SetI ASST 9 cut(s) 27, 54, 175, 191, 219, 314, 341, 372, 450
SfaNI GCATC 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 5 cut(s) 277, 289, 401, 415, 429
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 330, 384
TaaI ACNGT 1 cut(s) 301
TasI AATT 5 cut(s) 277, 289, 401, 415, 429
TatI WGTACW 2 cut(s) 11, 372
TfiI GAWTC 1 cut(s) 269
TseI GCWGC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 156, 209, 414
XapI RAATTY 2 cut(s) 401, 429
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 9
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.