Rmu_sc0000435.1_g000053

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000435.1
OG0000148
Physical Location & Seq
Reverse (-)
246661 .. 247684
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000435.1_g000053.1.cds

Sequence Viewer

Length: 816 bp
atgcctttgtcagaaactcttctgaagcttaaatcaaaaccaaacttgagcaatgaatatccaaatcaaggaatatgtattgaacctcaaatggtaggaagctggatgaatgaggaaggaaacttgaagcttatggttagcaaatctcagaagattgtttgctatgcagaagcaggggaggattttgtcaatttacttttcaatttcctgaccattccattcgggtttataataaaacagatccaggatagctcgtcctctttgaaaggaagcattgagcagctgtacaagagtgtccaggatcttgatgatgaattcttcaaatcaaattaccagaaggaaattttactcaatccgaagctttaccctggtttttgctatgagaaccatcttttaggaattgagtatggcctggagacctcgaattatcatgcacgatactggacaggtgattcctttagtaaagtggtgactactgataaagcctttgttccttcctattcttcttctatgccatcagtgactactgtcccacttaaactccattattttgagactcaatatgacgccgtacgtgatcaaggatttttgaatggaccgacaatgtttacaattactgacaatctgatcacaaagcccatatctcctctatttggcctttctgttttaaacgaaatgatggtactattcactgatattgaggagcaaatggtgcaggttgttaaggaggaggcttttggccttttggtaacatcttttctttgtgactcttctctcaccagcgtctaccttaggcagccaaagagtgaacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

271

Amino Acids

30.78

Weight (kDa)

4.79

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
Acc36I ACCTGC 1 cut(s) 706
AccI GTMKAC 1 cut(s) 786
AclWI GGATC 2 cut(s) 235, 309
AcsI RAATTY 2 cut(s) 314, 342
AcuI CTGAAG 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 567
AfaI GTAC 3 cut(s) 287, 573, 684
AfiI CCNNNNNNNGG 2 cut(s) 68, 653
AgsI TTSAA 6 cut(s) 83, 127, 202, 265, 322, 592
AjnI CCWGG 4 cut(s) 243, 297, 367, 411
AluBI AGCT 6 cut(s) 28, 102, 130, 252, 283, 361
AluI AGCT 6 cut(s) 28, 102, 130, 252, 283, 361
Alw26I GTCTC 2 cut(s) 410, 548
AlwI GGATC 2 cut(s) 235, 309
AoxI GGCC 3 cut(s) 409, 655, 739
ApeKI GCWGC 2 cut(s) 280, 796
ApoI RAATTY 2 cut(s) 314, 342
Asp700I GAANNNNTTC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 596
AsuHPI GGTGA 3 cut(s) 461, 481, 769
AvaII GGWCC 1 cut(s) 596
AxyI CCTNAGG 1 cut(s) 791
BbvI GCAGC 2 cut(s) 292, 808
BccI CCATC 3 cut(s) 396, 523, 673
BceAI ACGGC 1 cut(s) 554
BciT130I CCWGG 4 cut(s) 245, 299, 369, 413
BclI TGATCA 2 cut(s) 577, 627
BcoDI GTCTC 2 cut(s) 410, 548
BfuAI ACCTGC 1 cut(s) 706
BisI GCNGC 2 cut(s) 281, 797
BlsI GCNGC 2 cut(s) 282, 798
Bme1390I CCNGG 4 cut(s) 245, 299, 369, 413
Bme18I GGWCC 1 cut(s) 596
BmgT120I GGNCC 1 cut(s) 596
BmrFI CCNGG 4 cut(s) 245, 299, 369, 413
BoxI GACNNNNGTC 1 cut(s) 527
BpmI CTGGAG 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 575
BsaHI GRCGYC 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 367
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 653
Bse1I ACTGG 1 cut(s) 446
Bse21I CCTNAGG 1 cut(s) 791
Bse3DI GCAATG 1 cut(s) 58
BseBI CCWGG 4 cut(s) 245, 299, 369, 413
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 68, 653
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 446
BseRI GAGGAG 3 cut(s) 636, 716, 743
BseXI GCAGC 2 cut(s) 292, 808
BsgI GTGCAG 1 cut(s) 734
BshFI GGCC 3 cut(s) 411, 657, 741
BsiWI CGTACG 1 cut(s) 571
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 2 cut(s) 68, 653
BsmAI GTCTC 2 cut(s) 410, 548
BsmFI GGGAC 1 cut(s) 515
BsnI GGCC 3 cut(s) 411, 657, 741
Bso31I GGTCTC 1 cut(s) 410
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 4 cut(s) 240, 301, 577, 627
BspANI GGCC 3 cut(s) 411, 657, 741
BspCNI CTCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 706
BspPI GGATC 2 cut(s) 235, 309
BspTNI GGTCTC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 1 cut(s) 446
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 4 cut(s) 240, 301, 577, 627
BssNI GRCGYC 1 cut(s) 567
Bst2UI CCWGG 4 cut(s) 245, 299, 369, 413
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 2 cut(s) 24, 775
BstACI GRCGYC 1 cut(s) 567
BstAPI GCANNNNNTGC 1 cut(s) 712
BstAUI TGTACA 1 cut(s) 285
BstBAI YACGTR 1 cut(s) 575
BstDEI CTNAG 2 cut(s) 147, 791
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 4 cut(s) 243, 304, 580, 630
BstMAI GTCTC 2 cut(s) 410, 548
BstMBI GATC 4 cut(s) 240, 301, 577, 627
BstMWI GCNNNNNNNGC 1 cut(s) 712
BstNI CCWGG 4 cut(s) 245, 299, 369, 413
BstPAI GACNNNNGTC 1 cut(s) 527
BstSCI CCNGG 4 cut(s) 243, 297, 367, 411
BstV1I GCAGC 2 cut(s) 292, 808
BstX2I RGATCY 2 cut(s) 240, 301
BstYI RGATCY 2 cut(s) 240, 301
Bsu36I CCTNAGG 1 cut(s) 791
BsuRI GGCC 3 cut(s) 411, 657, 741
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 525, 690
BveI ACCTGC 1 cut(s) 706
Cfr13I GGNCC 1 cut(s) 596
CseI GACGC 2 cut(s) 575, 772
Csp6I GTAC 3 cut(s) 286, 572, 683
CviAII CATG 1 cut(s) 431
CviQI GTAC 3 cut(s) 286, 572, 683
DdeI CTNAG 2 cut(s) 147, 791
DpnI GATC 4 cut(s) 242, 303, 579, 629
DpnII GATC 4 cut(s) 240, 301, 577, 627
DraI TTTAAA 1 cut(s) 669
Eam1104I CTCTTC 2 cut(s) 24, 775
EarI CTCTTC 2 cut(s) 24, 775
Eco31I GGTCTC 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 44
Eco81I CCTNAGG 1 cut(s) 791
EcoRI GAATTC 1 cut(s) 314
EcoRII CCWGG 4 cut(s) 243, 297, 367, 411
FaeI CATG 1 cut(s) 434
FaqI GGGAC 1 cut(s) 515
FatI CATG 1 cut(s) 430
FbaI TGATCA 2 cut(s) 577, 627
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 2 cut(s) 281, 797
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 2 cut(s) 281, 797
GluI GCNGC 2 cut(s) 281, 797
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 3 cut(s) 411, 657, 741
HgaI GACGC 2 cut(s) 575, 772
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 1 cut(s) 434
HindIII AAGCTT 3 cut(s) 26, 128, 359
HinfI GANTC 3 cut(s) 452, 556, 767
HphI GGTGA 3 cut(s) 461, 481, 769
Hpy166II GTNNAC 3 cut(s) 609, 787, 809
Hpy188I TCNGA 5 cut(s) 13, 24, 150, 357, 627
Hpy188III TCNNGA 2 cut(s) 208, 305
Hpy8I GTNNAC 3 cut(s) 609, 787, 809
HpyAV CCTTC 3 cut(s) 110, 331, 504
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 1 cut(s) 574
HpyCH4V TGCA 3 cut(s) 167, 434, 715
HpyF10VI GCNNNNNNNGC 1 cut(s) 712
HpyF3I CTNAG 2 cut(s) 147, 791
HpySE526I ACGT 1 cut(s) 574
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 1 cut(s) 434
Ksp22I TGATCA 2 cut(s) 577, 627
Kzo9I GATC 4 cut(s) 240, 301, 577, 627
LmnI GCTCC 1 cut(s) 703
Lsp1109I GCAGC 2 cut(s) 292, 808
MaeII ACGT 1 cut(s) 574
MaeIII GTNAC 4 cut(s) 469, 520, 748, 764
MalI GATC 4 cut(s) 242, 303, 579, 629
MboI GATC 4 cut(s) 240, 301, 577, 627
MboII GAAGA 6 cut(s) 11, 163, 310, 495, 498, 762
MflI RGATCY 2 cut(s) 240, 301
MluCI AATT 8 cut(s) 190, 202, 314, 328, 342, 399, 424, 612
MlyI GAGTC 2 cut(s) 550, 761
MnlI CCTC 9 cut(s) 96, 106, 172, 268, 430, 657, 694, 721, 724
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 4 cut(s) 30, 537, 668, 723
MspA1I CMGCKG 1 cut(s) 283
MspR9I CCNGG 4 cut(s) 245, 299, 369, 413
MvaI CCWGG 4 cut(s) 245, 299, 369, 413
MwoI GCNNNNNNNGC 1 cut(s) 712
NdeII GATC 4 cut(s) 240, 301, 577, 627
NlaIII CATG 1 cut(s) 434
NmuCI GTSAC 3 cut(s) 469, 520, 764
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 452
Pfl23II CGTACG 1 cut(s) 571
PfoI TCCNGGA 2 cut(s) 243, 297
PkrI GCNGC 2 cut(s) 282, 798
PleI GAGTC 2 cut(s) 550, 761
PpsI GAGTC 2 cut(s) 550, 761
Ppu21I YACGTR 1 cut(s) 575
PshAI GACNNNNGTC 1 cut(s) 527
PsiI TTATAA 1 cut(s) 230
Psp6I CCWGG 4 cut(s) 243, 297, 367, 411
PspGI CCWGG 4 cut(s) 243, 297, 367, 411
PspLI CGTACG 1 cut(s) 571
PspPI GGNCC 1 cut(s) 596
PsuI RGATCY 2 cut(s) 240, 301
PvuII CAGCTG 1 cut(s) 283
RsaI GTAC 3 cut(s) 287, 573, 684
RsaNI GTAC 3 cut(s) 286, 572, 683
SaqAI TTAA 4 cut(s) 30, 537, 668, 723
SatI GCNGC 2 cut(s) 281, 797
Sau3AI GATC 4 cut(s) 240, 301, 577, 627
Sau96I GGNCC 1 cut(s) 596
SchI GAGTC 2 cut(s) 550, 761
ScrFI CCNGG 4 cut(s) 245, 299, 369, 413
SinI GGWCC 1 cut(s) 596
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 8 cut(s) 190, 202, 314, 328, 342, 399, 424, 612
StyD4I CCNGG 4 cut(s) 243, 297, 367, 411
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 1 cut(s) 577
TaqI TCGA 1 cut(s) 422
TaqII GACCGA 1 cut(s) 613
TasI AATT 8 cut(s) 190, 202, 314, 328, 342, 399, 424, 612
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 4 cut(s) 30, 537, 668, 723
Tru9I TTAA 4 cut(s) 30, 537, 668, 723
TscAI CASTG 2 cut(s) 525, 697
TseFI GTSAC 3 cut(s) 469, 520, 764
TseI GCWGC 2 cut(s) 280, 796
Tsp45I GTSAC 3 cut(s) 469, 520, 764
TspDTI ATGAA 3 cut(s) 69, 122, 327
TspRI CASTG 2 cut(s) 525, 697
VpaK11BI GGWCC 1 cut(s) 596
XapI RAATTY 2 cut(s) 314, 342
XmiI GTMKAC 1 cut(s) 786
XmnI GAANNNNTTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.