RchiOBHm_Chr5g0067721

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000148
Physical Location & Seq
Forward (+)
73850959 .. 73852327
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34340

Sequence Viewer

Length: 714 bp
ATGGCAGGGGAGACGGAGATTGAGGAAGAAGAAGAGATTTCAGTGAAGCCTATGGTTAGTACACCAAGGAAGATGGTTCATTATGCAGAAGCATGGGAATATTTTCTTAATTTACCCTTCAGTTTCCTGACTCCTCCACGTGGATTCACATCAAAACAGAGGCAAGGCTCTTCTTCAAAAGAAACCATTGTGGAAGAAGAAATGATTTCTGTGAAGCTTAAGGTCAGCAAATCAAGGAAGATGGTTTGTTTTGCAGAAGCAGGGGAAGATTTTGTCAATTTACTCTTCAGTTTCCTGACTATTCCACTCGGATTCATATTAAAACAGATGCAGGATTATTCTTGGAAAGGATGTATTGATCAGTTGTACAAGAGTGTCCAAGATCTGGATGATGAGCAATACTTGAAGTCAAATGATCACAAGAATATTCTACTGAGTCCCAAAATTTTTCCTTGTTTTTCCTGCAAGAACCATATTTTTGGAATTCAGGAGGGCAAGGCCTCATATTACTACGCTTATTGTCGTCCTAACAGTGTAGAGGATATGTTGCTTACTGAAAAAACCCTCATCCGTTTTCAGGTATTGTTTACATTCCATCTCAACTTGGTGAATAATATAAGTTCTCAAGGATTTTTGAAAGGACCGACCATGTTCACAGTAACCAACAAGCTGATTGTAAGGCCTATATCTCCCATTTCGGCTTTTCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

237

Amino Acids

27.31

Weight (kDa)

6.45

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 56 - 235 6.7e-41 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 385
AcsI RAATTY 2 cut(s) 444, 483
AcuI CTGAAG 2 cut(s) 103, 271
AcvI CACGTG 1 cut(s) 140
AfaI GTAC 2 cut(s) 61, 368
AfiI CCNNNNNNNGG 3 cut(s) 140, 385, 577
AflII CTTAAG 1 cut(s) 218
AgsI TTSAA 3 cut(s) 177, 406, 637
AluBI AGCT 2 cut(s) 217, 670
AluI AGCT 2 cut(s) 217, 670
Alw26I GTCTC 1 cut(s) 5
AoxI GGCC 2 cut(s) 498, 680
ApoI RAATTY 2 cut(s) 444, 483
Asp700I GAANNNNTTC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 641
AsuHPI GGTGA 1 cut(s) 619
AvaII GGWCC 1 cut(s) 641
BbrPI CACGTG 1 cut(s) 140
BccI CCATC 3 cut(s) 67, 235, 603
BclI TGATCA 2 cut(s) 358, 415
BcoDI GTCTC 1 cut(s) 5
BfrI CTTAAG 1 cut(s) 218
BglII AGATCT 1 cut(s) 382
Bme18I GGWCC 1 cut(s) 641
BmgT120I GGNCC 1 cut(s) 641
BmsI GCATC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 609
BsaAI YACGTR 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 65
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 385, 577
Bse8I GATNNNNATC 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 3 cut(s) 356, 394, 567
BseJI GATNNNNATC 1 cut(s) 148
BseLI CCNNNNNNNGG 3 cut(s) 140, 385, 577
BseMII CTCAG 1 cut(s) 425
BseRI GAGGAG 1 cut(s) 123
BshFI GGCC 2 cut(s) 500, 682
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 3 cut(s) 140, 385, 577
BsmAI GTCTC 1 cut(s) 5
BsmBI CGTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 2 cut(s) 500, 682
Bsp1407I TGTACA 1 cut(s) 366
Bsp143I GATC 3 cut(s) 358, 382, 415
BspANI GGCC 2 cut(s) 500, 682
BspCNI CTCAG 1 cut(s) 426
BspQI GCTCTTC 1 cut(s) 175
BspTI CTTAAG 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 366
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 3 cut(s) 358, 382, 415
BssT1I CCWWGG 1 cut(s) 65
Bst4CI ACNGT 2 cut(s) 533, 658
Bst6I CTCTTC 3 cut(s) 27, 175, 290
BstAFI CTTAAG 1 cut(s) 218
BstAUI TGTACA 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 434
BstF5I GGATG 3 cut(s) 356, 394, 567
BstKTI GATC 3 cut(s) 361, 385, 418
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 3 cut(s) 358, 382, 415
BstX2I RGATCY 1 cut(s) 382
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 2 cut(s) 500, 682
BtsCI GGATG 3 cut(s) 356, 394, 567
BtsIMutI CAGTG 2 cut(s) 48, 538
Cfr13I GGNCC 1 cut(s) 641
Csp6I GTAC 2 cut(s) 60, 367
CviAII CATG 2 cut(s) 93, 649
CviJI RGCY 7 cut(s) 49, 168, 217, 500, 670, 682, 701
CviKI_1 RGCY 7 cut(s) 49, 168, 217, 500, 670, 682, 701
CviQI GTAC 2 cut(s) 60, 367
DdeI CTNAG 1 cut(s) 434
DpnI GATC 3 cut(s) 360, 384, 417
DpnII GATC 3 cut(s) 358, 382, 415
Eam1104I CTCTTC 3 cut(s) 27, 175, 290
EarI CTCTTC 3 cut(s) 27, 175, 290
Eco130I CCWWGG 1 cut(s) 65
Eco147I AGGCCT 2 cut(s) 500, 682
Eco47I GGWCC 1 cut(s) 641
Eco57I CTGAAG 2 cut(s) 103, 271
Eco72I CACGTG 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 2 cut(s) 96, 652
FaqI GGGAC 1 cut(s) 423
FatI CATG 2 cut(s) 92, 648
FbaI TGATCA 2 cut(s) 358, 415
FokI GGATG 3 cut(s) 363, 401, 554
HaeIII GGCC 2 cut(s) 500, 682
Hin1II CATG 2 cut(s) 96, 652
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 4 cut(s) 130, 144, 312, 436
HphI GGTGA 1 cut(s) 619
Hpy166II GTNNAC 3 cut(s) 62, 588, 654
Hpy188I TCNGA 1 cut(s) 311
Hpy188III TCNNGA 4 cut(s) 127, 295, 386, 488
Hpy8I GTNNAC 3 cut(s) 62, 588, 654
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 2 cut(s) 533, 658
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 4 cut(s) 86, 254, 331, 465
HpyF3I CTNAG 1 cut(s) 434
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 2 cut(s) 96, 652
Ksp22I TGATCA 2 cut(s) 358, 415
Kzo9I GATC 3 cut(s) 358, 382, 415
LguI GCTCTTC 1 cut(s) 175
LpnPI CCDG 8 cut(s) 140, 246, 308, 317, 371, 473, 475, 563
LweI GCATC 1 cut(s) 318
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 658
MalI GATC 3 cut(s) 360, 384, 417
MboI GATC 3 cut(s) 358, 382, 415
MflI RGATCY 1 cut(s) 382
MluCI AATT 4 cut(s) 109, 277, 444, 483
MlyI GAGTC 2 cut(s) 124, 445
MnlI CCTC 7 cut(s) 16, 144, 153, 484, 511, 532, 575
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 3 cut(s) 108, 219, 320
MspCI CTTAAG 1 cut(s) 218
NdeII GATC 3 cut(s) 358, 382, 415
NlaIII CATG 2 cut(s) 96, 652
PceI AGGCCT 2 cut(s) 500, 682
PciSI GCTCTTC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 2 cut(s) 144, 312
PflMI CCANNNNNTGG 1 cut(s) 385
PleI GAGTC 2 cut(s) 124, 444
PmaCI CACGTG 1 cut(s) 140
PmlI CACGTG 1 cut(s) 140
PpsI GAGTC 2 cut(s) 124, 444
Ppu21I YACGTR 1 cut(s) 140
PspCI CACGTG 1 cut(s) 140
PspPI GGNCC 1 cut(s) 641
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 2 cut(s) 61, 368
RsaNI GTAC 2 cut(s) 60, 367
SapI GCTCTTC 1 cut(s) 175
SaqAI TTAA 3 cut(s) 108, 219, 320
Sau3AI GATC 3 cut(s) 358, 382, 415
Sau96I GGNCC 1 cut(s) 641
SchI GAGTC 2 cut(s) 124, 445
SetI ASST 5 cut(s) 142, 219, 225, 582, 672
SfaNI GCATC 1 cut(s) 318
SinI GGWCC 1 cut(s) 641
SmlI CTYRAG 2 cut(s) 218, 624
SmoI CTYRAG 2 cut(s) 218, 624
Sse9I AATT 4 cut(s) 109, 277, 444, 483
SseBI AGGCCT 2 cut(s) 500, 682
SspI AATATT 2 cut(s) 101, 427
StuI AGGCCT 2 cut(s) 500, 682
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 2 cut(s) 533, 658
TaiI ACGT 1 cut(s) 142
TaqII GACCGA 1 cut(s) 658
TasI AATT 4 cut(s) 109, 277, 444, 483
TatI WGTACW 2 cut(s) 59, 366
TfiI GAWTC 2 cut(s) 144, 312
Tru1I TTAA 3 cut(s) 108, 219, 320
Tru9I TTAA 3 cut(s) 108, 219, 320
TscAI CASTG 2 cut(s) 48, 538
TspDTI ATGAA 2 cut(s) 68, 304
TspGWI ACGGA 2 cut(s) 29, 560
TspRI CASTG 2 cut(s) 48, 538
Van91I CCANNNNNTGG 1 cut(s) 385
Vha464I CTTAAG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 641
XapI RAATTY 2 cut(s) 444, 483
XmnI GAANNNNTTC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.