Rroxscaffold_1G00013510

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000148
Physical Location & Seq
Reverse (-)
16617756 .. 16619259
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013510.1

Sequence Viewer

Length: 213 bp
ATGGTGAGCCCACACAATACGTTTTGCACCTACAGATATAATTTATTTAGTCATTACAAGGATGTTCTTTGTGAGTGTGGAGAACCCATGGATAATGAGATACCTCTTTCAGTGGGAAAGTTGAAGAAATCCTCTTCTGCAGATGGTGGAGCGTTTTGTAAAGGACTAACCAGATTTATAATTACTGATGACCTAGAAGTCATGCCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

70

Amino Acids

7.82

Weight (kDa)

5.49

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 7 - 68 3.3e-11 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AasI GACNNNNNNGTC 1 cut(s) 197
AgsI TTSAA 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 16
BanII GRGCYC 1 cut(s) 11
BccI CCATC 1 cut(s) 137
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 2 cut(s) 31, 138
BsaJI CCNNGG 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 11
Bsp19I CCATGG 1 cut(s) 87
BspMAI CTGCAG 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 139
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 67
BstSFI CTRYAG 2 cut(s) 31, 138
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 117
CviAII CATG 2 cut(s) 88, 202
CviJI RGCY 1 cut(s) 9
CviKI_1 RGCY 1 cut(s) 9
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 91, 205
FaiI YATR 5 cut(s) 39, 89, 179, 203, 211
FatI CATG 2 cut(s) 87, 201
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 11
FspBI CTAG 1 cut(s) 194
Hin1II CATG 2 cut(s) 91, 205
HphI GGTGA 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 2 cut(s) 27, 140
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 2 cut(s) 91, 205
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 1 cut(s) 184
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 20
MboII GAAGA 2 cut(s) 126, 136
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 2 cut(s) 40, 180
MnlI CCTC 2 cut(s) 114, 142
NcoI CCATGG 1 cut(s) 87
NlaIII CATG 2 cut(s) 91, 205
PsiI TTATAA 1 cut(s) 179
PstI CTGCAG 1 cut(s) 142
SduI GDGCHC 1 cut(s) 11
SetI ASST 4 cut(s) 23, 32, 106, 195
SfcI CTRYAG 2 cut(s) 31, 138
SgeI CNNG 4 cut(s) 70, 100, 183, 206
Sse9I AATT 2 cut(s) 40, 180
SspMI CTAG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 23
TasI AATT 2 cut(s) 40, 180
TscAI CASTG 1 cut(s) 117
TspRI CASTG 1 cut(s) 117
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.