Rmu_sc0001418.1_g000008

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001418.1
OG0000148
Physical Location & Seq
Reverse (-)
24112 .. 24744
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001418.1_g000008.1.cds

Sequence Viewer

Length: 633 bp
atggctcaagaagtatcagatgcgaagaatatcagcttgaaggcattggtggacaagggaagaaacaaagtaatcttcgtagaggccgataatgatttcattgatgttctcttcagttttttgacaataccaatgggaaaaattgtcaggcttgctcgcgaccattcaaaagcactggaaataggttgcataaaaaaattgtatcagagtattgagaagcttgatgtgcaggttttcaggtccaatgtatgtagagacatgttgttacttccgcactgtgcagctaactgtcattgcaagaacctcaaattgaaaattattgacgatgtggagccaacacggtttaagtgcggttattatgctgattgcccttggttaagttattttgcaaaggttccttgcccttcctgctcaaataccttgggttctgaagtatatctttcagtggacgattctcaagttggaggggtatttgtaaaagaaggagctagtgttataattactgatgatttacaagtgctatcccaattaagtgcagctagcatttccctgtttacgaagcttggagccacgaacagcaataccactgaggagctaacttttaatattggagttgagcaggtaattttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

210

Amino Acids

23.21

Weight (kDa)

5.64

Isoelectric Point (pI)

29.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 497
Acc36I ACCTGC 2 cut(s) 220, 610
AccII CGCG 1 cut(s) 159
AciI CCGC 2 cut(s) 272, 351
AcuI CTGAAG 2 cut(s) 97, 450
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 3 cut(s) 40, 168, 313
AluBI AGCT 7 cut(s) 36, 220, 284, 488, 539, 562, 595
AluI AGCT 7 cut(s) 36, 220, 284, 488, 539, 562, 595
Alw26I GTCTC 1 cut(s) 249
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 281, 536
AspS9I GGNCC 1 cut(s) 240
AsuNHI GCTAGC 1 cut(s) 539
AvaII GGWCC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 293, 548
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 2 cut(s) 489, 540
BfuAI ACCTGC 2 cut(s) 220, 610
BisI GCNGC 2 cut(s) 282, 537
BlsI GCNGC 2 cut(s) 283, 538
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 3 cut(s) 333, 396, 568
BmsI GCATC 1 cut(s) 10
BmtI GCTAGC 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 441
BsaJI CCNNGG 2 cut(s) 371, 420
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 371, 420
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 579
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 605
BseXI GCAGC 2 cut(s) 293, 548
BsgI GTGCAG 3 cut(s) 248, 300, 555
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 249
BsnI GGCC 1 cut(s) 86
Bsp68I TCGCGA 1 cut(s) 159
BspACI CCGC 2 cut(s) 272, 351
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 580
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 3 cut(s) 333, 396, 568
BspMI ACCTGC 2 cut(s) 220, 610
BspOI GCTAGC 1 cut(s) 543
BsrDI GCAATG 1 cut(s) 292
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 371, 420
BssT1I CCWWGG 2 cut(s) 371, 420
Bst4CI ACNGT 3 cut(s) 278, 290, 342
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 3 cut(s) 153, 157, 541
BstDEI CTNAG 1 cut(s) 588
BstFNI CGCG 1 cut(s) 159
BstMAI GTCTC 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 226, 408
BstNSI RCATGY 1 cut(s) 262
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 293, 548
BsuRI GGCC 1 cut(s) 86
BtsIMutI CAGTG 4 cut(s) 173, 274, 450, 585
BtuMI TCGCGA 1 cut(s) 159
BveI ACCTGC 2 cut(s) 220, 610
Cac8I GCNNGC 3 cut(s) 153, 157, 541
Cfr13I GGNCC 1 cut(s) 240
CviAII CATG 1 cut(s) 259
DdeI CTNAG 1 cut(s) 588
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco130I CCWWGG 2 cut(s) 371, 420
Eco47I GGWCC 1 cut(s) 240
Eco57I CTGAAG 2 cut(s) 97, 450
EcoT14I CCWWGG 2 cut(s) 371, 420
ErhI CCWWGG 2 cut(s) 371, 420
FaeI CATG 1 cut(s) 262
FaiI YATR 6 cut(s) 191, 250, 260, 360, 436, 497
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 282, 537
Fsp4HI GCNGC 2 cut(s) 282, 537
FspBI CTAG 2 cut(s) 489, 540
GluI GCNGC 2 cut(s) 282, 537
HaeIII GGCC 1 cut(s) 86
Hin1II CATG 1 cut(s) 262
HindIII AAGCTT 2 cut(s) 218, 560
HinfI GANTC 1 cut(s) 452
Hpy166II GTNNAC 3 cut(s) 52, 448, 555
Hpy188I TCNGA 3 cut(s) 19, 207, 430
Hpy188III TCNNGA 2 cut(s) 8, 158
Hpy8I GTNNAC 3 cut(s) 52, 448, 555
HpyAV CCTTC 3 cut(s) 34, 414, 476
HpyCH4III ACNGT 3 cut(s) 278, 290, 342
HpyCH4V TGCA 6 cut(s) 189, 229, 281, 297, 389, 536
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 408
HpyF3I CTNAG 1 cut(s) 588
Hsp92II CATG 1 cut(s) 262
LmnI GCTCC 4 cut(s) 331, 485, 566, 592
LpnPI CCDG 7 cut(s) 133, 161, 215, 223, 421, 563, 605
Lsp1109I GCAGC 2 cut(s) 293, 548
LweI GCATC 1 cut(s) 10
MaeI CTAG 2 cut(s) 489, 540
MaeIII GTNAC 1 cut(s) 264
MboII GAAGA 4 cut(s) 37, 67, 72, 103
MluCI AATT 7 cut(s) 141, 197, 308, 315, 498, 527, 624
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 4 cut(s) 76, 314, 458, 583
MseI TTAA 4 cut(s) 345, 377, 530, 603
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 226, 408
NheI GCTAGC 1 cut(s) 539
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 3 cut(s) 333, 396, 568
NruI TCGCGA 1 cut(s) 159
NspI RCATGY 1 cut(s) 262
PciI ACATGT 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 2 cut(s) 283, 538
PscI ACATGT 1 cut(s) 258
PsiI TTATAA 1 cut(s) 497
PspN4I GGNNCC 3 cut(s) 333, 396, 568
PspPI GGNCC 1 cut(s) 240
RruI TCGCGA 1 cut(s) 159
SaqAI TTAA 4 cut(s) 345, 377, 530, 603
SatI GCNGC 2 cut(s) 282, 537
Sau96I GGNCC 1 cut(s) 240
SfaNI GCATC 1 cut(s) 10
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 2 cut(s) 6, 456
SmoI CTYRAG 2 cut(s) 6, 456
Sse9I AATT 7 cut(s) 141, 197, 308, 315, 498, 527, 624
SsiI CCGC 2 cut(s) 272, 351
SspI AATATT 1 cut(s) 607
SspMI CTAG 2 cut(s) 489, 540
StyI CCWWGG 2 cut(s) 371, 420
TaaI ACNGT 3 cut(s) 278, 290, 342
TasI AATT 7 cut(s) 141, 197, 308, 315, 498, 527, 624
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 4 cut(s) 345, 377, 530, 603
Tru9I TTAA 4 cut(s) 345, 377, 530, 603
TscAI CASTG 4 cut(s) 180, 281, 450, 592
TseI GCWGC 2 cut(s) 281, 536
TspDTI ATGAA 1 cut(s) 88
TspRI CASTG 4 cut(s) 180, 281, 450, 592
VpaK11BI GGWCC 1 cut(s) 240
XceI RCATGY 1 cut(s) 262
XspI CTAG 2 cut(s) 489, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.