Prupe.1G077500_v2.0.a1

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000148
Physical Location & Seq
Reverse (-)
5595229 .. 5596830
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G077500.1

Sequence Viewer

Length: 771 bp
ATGGTTGAGAGATGTCGTCTTCTTCCTGCTCTGAATTCTGGTTCAGAGGGTGGGGTTTTGAACTTGCTTCTGAGCTCGTTAGTATCAAAGAAACCTCTGTCTGAAACTATACTGAAGCATAATCCTGTACCAAATCCGAATTTGAGCATTTTAAATCTGGATCAACTAATATTGACACGTATTGAATCTCTACTGCTTGGAGACACGATGACTGAGGGAGAAGAAGAAGAAAAGATTGTTGTTAAGCTGACAATTAGCGTATCGAAGAATATTGTTTGTTATGCAGAAGCAGGGGAGGATTTTGTTAATTTGCTCTTCAGTTTTTTGACTGTTCCACTTGGTTTCATAGTAAAGCATATGAGGGATGCCTCTTTCAAAGGGTGCATTGATCAGTTGTGCAAATGTGTCGAAGATCTTGATGAGCAGCACTTGAGTCCTAAGATTTCTCCTGGTTTTTGCCACGAGAACTGTCTGTTAGGAATTGAGGATGGCCTGGTGGCCTCATATATTGGCCGGAGGATGGAGCATGATAAAAGTACTCAAGGGTATTTGAAAGCATCAACGGCATTCATGGTAACTGACAAGCTGATTATAAATGAATTGAAGGTACCTTTCACTGACATAAAGGAGGAAACTGTTGAGGTTGGCAAGAAGGAGGCTTTGCGTCTTTTGGTGGCTACTTTTCTTAGCGACTCTGCTCTAACCGATGTCTTCATTAGGCGGCTGAATCAAGAAAAGTCTATAAAGAGAGCTTGCTTATCTATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

257

Amino Acids

28.44

Weight (kDa)

5.4

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 593
Acc65I GGTACC 1 cut(s) 607
AccB1I GGYRCC 1 cut(s) 607
AciI CCGC 1 cut(s) 721
AclWI GGATC 1 cut(s) 168
AcoI YGGCCR 1 cut(s) 511
AcsI RAATTY 2 cut(s) 34, 139
AcuI CTGAAG 2 cut(s) 134, 301
AfaI GTAC 3 cut(s) 129, 538, 609
AfiI CCNNNNNNNGG 1 cut(s) 520
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 6 cut(s) 61, 185, 376, 553, 604, 767
AjnI CCWGG 2 cut(s) 448, 492
AluBI AGCT 4 cut(s) 75, 247, 586, 752
AluI AGCT 4 cut(s) 75, 247, 586, 752
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 1 cut(s) 168
AoxI GGCC 3 cut(s) 490, 498, 511
ApeKI GCWGC 1 cut(s) 424
ApoI RAATTY 2 cut(s) 34, 139
Asp718I GGTACC 1 cut(s) 607
BanI GGYRCC 1 cut(s) 607
BanII GRGCYC 1 cut(s) 77
BauI CACGAG 1 cut(s) 461
BbsI GAAGAC 2 cut(s) 11, 703
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 436
BccI CCATC 2 cut(s) 482, 514
BceAI ACGGC 1 cut(s) 579
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BciT130I CCWGG 2 cut(s) 450, 494
BclI TGATCA 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 195
BglII AGATCT 1 cut(s) 412
BisI GCNGC 2 cut(s) 425, 722
BlsI GCNGC 2 cut(s) 426, 723
BmcAI AGTACT 1 cut(s) 538
Bme1390I CCNGG 2 cut(s) 450, 494
BmiI GGNNCC 1 cut(s) 609
BmrFI CCNGG 2 cut(s) 450, 494
BmsI GCATC 2 cut(s) 355, 566
BpiI GAAGAC 2 cut(s) 11, 703
BpuEI CTTGAG 2 cut(s) 451, 525
BsaAI YACGTR 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 520
BseBI CCWGG 2 cut(s) 450, 494
BseGI GGATG 3 cut(s) 370, 493, 525
BseLI CCNNNNNNNGG 1 cut(s) 520
BseMII CTCAG 2 cut(s) 62, 204
BseXI GCAGC 1 cut(s) 436
BshFI GGCC 3 cut(s) 492, 500, 513
BshNI GGYRCC 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 514
BslI CCNNNNNNNGG 1 cut(s) 520
BsmAI GTCTC 1 cut(s) 195
BsmI GAATGC 1 cut(s) 566
BsnI GGCC 3 cut(s) 492, 500, 513
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 3 cut(s) 160, 388, 412
BspACI CCGC 1 cut(s) 721
BspANI GGCC 3 cut(s) 492, 500, 513
BspCNI CTCAG 2 cut(s) 63, 205
BspLI GGNNCC 1 cut(s) 609
BspPI GGATC 1 cut(s) 168
BspQI GCTCTTC 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 607
BssMI GATC 3 cut(s) 160, 388, 412
BssSI CACGAG 1 cut(s) 461
Bst2BI CACGAG 1 cut(s) 461
Bst2UI CCWGG 2 cut(s) 450, 494
Bst4CI ACNGT 3 cut(s) 331, 470, 637
Bst6I CTCTTC 1 cut(s) 320
BstBAI YACGTR 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 754
BstDEI CTNAG 4 cut(s) 71, 213, 438, 686
BstF5I GGATG 3 cut(s) 370, 493, 525
BstKTI GATC 3 cut(s) 163, 391, 415
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 3 cut(s) 160, 388, 412
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstNI CCWGG 2 cut(s) 450, 494
BstSCI CCNGG 2 cut(s) 448, 492
BstV1I GCAGC 1 cut(s) 436
BstV2I GAAGAC 2 cut(s) 11, 703
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 3 cut(s) 492, 500, 513
BtsCI GGATG 3 cut(s) 370, 493, 525
BtsIMutI CAGTG 1 cut(s) 615
Cac8I GCNNGC 1 cut(s) 754
CseI GACGC 1 cut(s) 653
Csp6I GTAC 3 cut(s) 128, 537, 608
CviAII CATG 2 cut(s) 527, 571
CviQI GTAC 3 cut(s) 128, 537, 608
DdeI CTNAG 4 cut(s) 71, 213, 438, 686
DpnI GATC 3 cut(s) 162, 390, 414
DpnII GATC 3 cut(s) 160, 388, 412
DraI TTTAAA 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 511
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Ecl136II GAGCTC 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 75
Eco57I CTGAAG 2 cut(s) 134, 301
EcoICRI GAGCTC 1 cut(s) 75
EcoRI GAATTC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 448, 492
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 2 cut(s) 530, 574
FatI CATG 2 cut(s) 526, 570
FauNDI CATATG 1 cut(s) 357
FbaI TGATCA 1 cut(s) 388
Fnu4HI GCNGC 2 cut(s) 425, 722
FokI GGATG 3 cut(s) 377, 500, 532
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 425, 722
GluI GCNGC 2 cut(s) 425, 722
HaeIII GGCC 3 cut(s) 492, 500, 513
HapII CCGG 1 cut(s) 514
HgaI GACGC 1 cut(s) 653
Hin1II CATG 2 cut(s) 530, 574
HinfI GANTC 4 cut(s) 185, 433, 692, 727
HpaII CCGG 1 cut(s) 514
Hpy188I TCNGA 5 cut(s) 33, 46, 72, 103, 138
Hpy188III TCNNGA 3 cut(s) 158, 416, 731
HpyAV CCTTC 2 cut(s) 598, 646
HpyCH4III ACNGT 3 cut(s) 331, 470, 637
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 3 cut(s) 284, 384, 399
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
HpyF3I CTNAG 4 cut(s) 71, 213, 438, 686
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 2 cut(s) 530, 574
KpnI GGTACC 1 cut(s) 611
Ksp22I TGATCA 1 cut(s) 388
Kzo9I GATC 3 cut(s) 160, 388, 412
LguI GCTCTTC 1 cut(s) 320
LmnI GCTCC 1 cut(s) 523
Lsp1109I GCAGC 1 cut(s) 436
LweI GCATC 2 cut(s) 355, 566
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 1 cut(s) 574
MalI GATC 3 cut(s) 162, 390, 414
MboI GATC 3 cut(s) 160, 388, 412
MboII GAAGA 9 cut(s) 11, 14, 233, 236, 239, 277, 307, 422, 703
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 6 cut(s) 34, 139, 252, 307, 480, 599
MlyI GAGTC 2 cut(s) 442, 686
MseI TTAA 3 cut(s) 152, 243, 306
MspI CCGG 1 cut(s) 514
MspR9I CCNGG 2 cut(s) 450, 494
Mva1269I GAATGC 1 cut(s) 566
MvaI CCWGG 2 cut(s) 450, 494
MwoI GCNNNNNNNGC 1 cut(s) 563
NdeI CATATG 1 cut(s) 357
NdeII GATC 3 cut(s) 160, 388, 412
NlaIII CATG 2 cut(s) 530, 574
NlaIV GGNNCC 1 cut(s) 609
PciSI GCTCTTC 1 cut(s) 320
PctI GAATGC 1 cut(s) 566
PfeI GAWTC 2 cut(s) 185, 727
PkrI GCNGC 2 cut(s) 426, 723
PleI GAGTC 2 cut(s) 441, 686
PpsI GAGTC 2 cut(s) 441, 686
Ppu21I YACGTR 1 cut(s) 179
PsiI TTATAA 1 cut(s) 593
Psp124BI GAGCTC 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 448, 492
PspGI CCWGG 2 cut(s) 448, 492
PspN4I GGNNCC 1 cut(s) 609
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 3 cut(s) 129, 538, 609
RsaNI GTAC 3 cut(s) 128, 537, 608
SacI GAGCTC 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 320
SaqAI TTAA 3 cut(s) 152, 243, 306
SatI GCNGC 2 cut(s) 425, 722
Sau3AI GATC 3 cut(s) 160, 388, 412
ScaI AGTACT 1 cut(s) 538
SchI GAGTC 2 cut(s) 442, 686
ScrFI CCNGG 2 cut(s) 450, 494
SduI GDGCHC 1 cut(s) 77
SetI ASST 9 cut(s) 77, 97, 181, 249, 588, 609, 613, 645, 754
SfaNI GCATC 2 cut(s) 355, 566
SmlI CTYRAG 2 cut(s) 430, 540
SmoI CTYRAG 2 cut(s) 430, 540
Sse9I AATT 6 cut(s) 34, 139, 252, 307, 480, 599
SsiI CCGC 1 cut(s) 721
SspI AATATT 2 cut(s) 171, 271
SstI GAGCTC 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 448, 492
TaaI ACNGT 3 cut(s) 331, 470, 637
TaiI ACGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 263, 408
TasI AATT 6 cut(s) 34, 139, 252, 307, 480, 599
TatI WGTACW 1 cut(s) 536
TauI GCSGC 1 cut(s) 724
TfiI GAWTC 2 cut(s) 185, 727
Tru1I TTAA 3 cut(s) 152, 243, 306
Tru9I TTAA 3 cut(s) 152, 243, 306
TscAI CASTG 1 cut(s) 622
TseI GCWGC 1 cut(s) 424
TspDTI ATGAA 4 cut(s) 334, 559, 612, 703
TspRI CASTG 1 cut(s) 622
XapI RAATTY 2 cut(s) 34, 139
ZrmI AGTACT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.