FvH4_3g37580

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000148
Physical Location & Seq
Forward (+)
32222259 .. 32224164
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37580.t1

Sequence Viewer

Length: 1350 bp
ATGGCTGATGAATCTAGAATTATCTTGAAGGCCTTAGTGAACAAGGGGAACAACAGAATCTTATTTATAAAGTCTGGTTGTGATTTTGTTAAGACCCTTTTCAGTTTCTTGTCAATCCCCATAGGAACTATTATCAGGCTTGCCCATAATCACTCAGTGCCGGTGGGAATAGGTTGCATGAACAATTTGTATGCAAGTGTTGAGAGCAGTGATGTGCAGCATTTCCGTACTGAAGCTTGTAGGGACATGCTGCTATGCCCCCGCAGTCGAGCAGGAGCCACTTTGAAGAACCTCAAGCATAACGTTGAGGACCATGAGACCACACGGTACTTCAGGTGCCCTAATGAGTCTTGCCAAAGCTCCTCAACCAAGTTGATTAGCTATTACAGCAGTGTTCGTTGTCGTTGTGGACATCTAATGGACAAAGAGATCAACCTTTCAGTTAAAGTTGGTGATAAGGTGTTTGTAAAAGGACTTTCCACACTTATTATCACTGATGATTTACAAGTCATGGCCCAAGGAACTCCAGCAATTTCTGTTTTCGTTGAGAAGCTTAGAAGCATGGATCCGAATACTATTAAGGAAGTGACTCTGAATATTGGAGTTATTGAGGTTTTGAATCTGCTCATGTGCTCATTTGTATCTAAGACACCCTTGACTGATATATTTCTGAAGCATACAGTAGCAGAAGTGAAGAATACTGGTAATCTACCAATACACACACACTCTTATTCACAAATGCCGCAAGACACAATGAGTGATGGTGCTACAATGTCTGTGCAGCTTATAGTTAGCAAGTCTAAGAAGGTGGTTTGTTATGCAGAAGCAGGGGAAGATTTTGTTAATTTTCTTTTCAGCTTCCTAATTCTTCCACTTGGTTTTATTTTAAAACAAATTCGTTTTGGTACTTTAAAAGGATGTATGGATCACTTATACAGAAGTGTCCAGAATCTTGATGAGAAATTCTTGAGATCTCAGTTCTGCAATGAACTGCTGCTTAGTCCCAAGCTTCCTCCTCGGTTTTGCTACGAAAATCACCCTTTAGGAATTGGAGTGGCATCATTTCGTTTTGAGTCAGCTGAAATTGTGGATCCTAAATCTCACTCGAACGAAATGGTTTGTGATCAAGGATTCTTAAAAGGGCCAGCCATGTTTTTGGTAACTGACAGTCTAGTTGTAACTCCAATATCTCCCATCTTTGGGCTACCTATTCTGAATGAACTAAATGTACCTATCACTGATATTGAGGTGAAGTCAGTCAATGTGGGTAAAGAGGAGGTGAGTTTGATTTATAATTGTTTCCATTACTACCTCATCACTTTTAAATATTCAGCTTGTATCCCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

450

Amino Acids

50.2

Weight (kDa)

7.82

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 4 - 425 4.8e-116 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 68, 1293
AccB1I GGYRCC 1 cut(s) 336
AciI CCGC 2 cut(s) 262, 743
AclI AACGTT 1 cut(s) 303
AclWI GGATC 5 cut(s) 560, 573, 933, 1085, 1098
AcsI RAATTY 2 cut(s) 894, 962
AcuI CTGAAG 3 cut(s) 252, 316, 692
AdeI CACNNNGTG 1 cut(s) 157
AfaI GTAC 4 cut(s) 229, 329, 907, 1230
AfiI CCNNNNNNNGG 2 cut(s) 1199, 1200
AgsI TTSAA 3 cut(s) 28, 286, 619
AluBI AGCT 9 cut(s) 236, 360, 381, 553, 784, 858, 1009, 1079, 1334
AluI AGCT 9 cut(s) 236, 360, 381, 553, 784, 858, 1009, 1079, 1334
Alw21I GWGCWC 1 cut(s) 635
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 5 cut(s) 560, 573, 933, 1085, 1098
AoxI GGCC 3 cut(s) 30, 513, 1142
ApeKI GCWGC 4 cut(s) 217, 250, 781, 994
ApoI RAATTY 2 cut(s) 894, 962
AspS9I GGNCC 3 cut(s) 310, 514, 1142
AsuHPI GGTGA 4 cut(s) 464, 1028, 1261, 1291
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 341
BamHI GGATCC 2 cut(s) 565, 1090
BanI GGYRCC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 635
BbvI GCAGC 4 cut(s) 229, 237, 793, 981
BccI CCATC 2 cut(s) 755, 1202
BciVI GTATCC 1 cut(s) 1349
BclI TGATCA 1 cut(s) 1123
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 2 cut(s) 15, 1172
BfuI GTATCC 1 cut(s) 1349
BglII AGATCT 1 cut(s) 971
BisI GCNGC 5 cut(s) 218, 251, 743, 782, 995
BlsI GCNGC 5 cut(s) 219, 252, 744, 783, 996
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 3 cut(s) 310, 514, 1142
BmiI GGNNCC 4 cut(s) 277, 338, 567, 1092
BmsI GCATC 1 cut(s) 1067
BpmI CTGGAG 1 cut(s) 510
BpuEI CTTGAG 2 cut(s) 278, 988
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 517, 1016
Bsc4I CCNNNNNNNGG 2 cut(s) 1199, 1200
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 706
Bse3DI GCAATG 1 cut(s) 991
BseDI CCNNGG 2 cut(s) 517, 1016
BseGI GGATG 1 cut(s) 923
BseLI CCNNNNNNNGG 2 cut(s) 1199, 1200
BseMI GCAATG 1 cut(s) 991
BseMII CTCAG 2 cut(s) 168, 989
BseNI ACTGG 1 cut(s) 706
BseRI GAGGAG 3 cut(s) 352, 1005, 1289
BseSI GKGCMC 1 cut(s) 341
BseXI GCAGC 4 cut(s) 229, 237, 793, 981
BsgI GTGCAG 2 cut(s) 236, 800
BshFI GGCC 3 cut(s) 32, 515, 1144
BshNI GGYRCC 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 635
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 2 cut(s) 257, 987
BslI CCNNNNNNNGG 2 cut(s) 1199, 1200
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 2 cut(s) 257, 987
BsnI GGCC 3 cut(s) 32, 515, 1144
Bso31I GGTCTC 1 cut(s) 311
Bsp1286I GDGCHC 2 cut(s) 341, 635
Bsp143I GATC 6 cut(s) 429, 565, 925, 971, 1090, 1123
BspACI CCGC 2 cut(s) 262, 743
BspANI GGCC 3 cut(s) 32, 515, 1144
BspCNI CTCAG 2 cut(s) 167, 988
BspLI GGNNCC 4 cut(s) 277, 338, 567, 1092
BspPI GGATC 5 cut(s) 560, 573, 933, 1085, 1098
BspT107I GGYRCC 1 cut(s) 336
BspTNI GGTCTC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 991
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 1 cut(s) 706
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 517, 1016
BssMI GATC 6 cut(s) 429, 565, 925, 971, 1090, 1123
BssT1I CCWWGG 1 cut(s) 517
Bst4CI ACNGT 3 cut(s) 327, 682, 1169
BstC8I GCNNGC 2 cut(s) 141, 1146
BstDEI CTNAG 7 cut(s) 34, 154, 554, 645, 801, 975, 998
BstF5I GGATG 1 cut(s) 923
BstKTI GATC 6 cut(s) 432, 568, 928, 974, 1093, 1126
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 6 cut(s) 429, 565, 925, 971, 1090, 1123
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstNSI RCATGY 1 cut(s) 250
BstSLI GKGCMC 1 cut(s) 341
BstV1I GCAGC 4 cut(s) 229, 237, 793, 981
BstX2I RGATCY 3 cut(s) 565, 971, 1090
BstXI CCANNNNNNTGG 1 cut(s) 1156
BstYI RGATCY 3 cut(s) 565, 971, 1090
BsuI GTATCC 1 cut(s) 1349
BsuRI GGCC 3 cut(s) 32, 515, 1144
BtsCI GGATG 1 cut(s) 923
BtsI GCAGTG 2 cut(s) 214, 397
BtsIMutI CAGTG 5 cut(s) 162, 214, 397, 492, 1236
Cac8I GCNNGC 2 cut(s) 141, 1146
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 3 cut(s) 310, 514, 1142
Csp6I GTAC 4 cut(s) 228, 328, 906, 1229
CviAII CATG 7 cut(s) 178, 247, 314, 511, 562, 628, 1150
CviQI GTAC 4 cut(s) 228, 328, 906, 1229
DdeI CTNAG 7 cut(s) 34, 154, 554, 645, 801, 975, 998
DpnI GATC 6 cut(s) 431, 567, 927, 973, 1092, 1125
DpnII GATC 6 cut(s) 429, 565, 925, 971, 1090, 1123
DraI TTTAAA 3 cut(s) 888, 912, 1324
DraIII CACNNNGTG 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 517
Eco147I AGGCCT 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 3 cut(s) 252, 316, 692
EcoT14I CCWWGG 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 517
FaeI CATG 7 cut(s) 181, 250, 317, 514, 565, 631, 1153
FalI AAGNNNNNCTT 2 cut(s) 638, 670
FaqI GGGAC 2 cut(s) 257, 987
FatI CATG 7 cut(s) 177, 246, 313, 510, 561, 627, 1149
FauI CCCGC 1 cut(s) 269
FbaI TGATCA 1 cut(s) 1123
Fnu4HI GCNGC 5 cut(s) 218, 251, 743, 782, 995
FokI GGATG 1 cut(s) 930
Fsp4HI GCNGC 5 cut(s) 218, 251, 743, 782, 995
FspBI CTAG 2 cut(s) 15, 1172
GluI GCNGC 5 cut(s) 218, 251, 743, 782, 995
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 3 cut(s) 32, 515, 1144
HapII CCGG 1 cut(s) 161
Hin1II CATG 7 cut(s) 181, 250, 317, 514, 565, 631, 1153
HindIII AAGCTT 3 cut(s) 234, 551, 1007
HinfI GANTC 8 cut(s) 11, 57, 347, 589, 619, 949, 1073, 1131
HpaII CCGG 1 cut(s) 161
HphI GGTGA 4 cut(s) 464, 1028, 1261, 1291
Hpy166II GTNNAC 2 cut(s) 40, 410
Hpy188I TCNGA 4 cut(s) 570, 594, 672, 1215
Hpy188III TCNNGA 5 cut(s) 15, 25, 946, 953, 967
Hpy8I GTNNAC 2 cut(s) 40, 410
HpyAV CCTTC 2 cut(s) 22, 799
HpyCH4III ACNGT 3 cut(s) 327, 682, 1169
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 6 cut(s) 177, 194, 217, 781, 821, 984
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 7 cut(s) 34, 154, 554, 645, 801, 975, 998
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 7 cut(s) 181, 250, 317, 514, 565, 631, 1153
Ksp22I TGATCA 1 cut(s) 1123
Kzo9I GATC 6 cut(s) 429, 565, 925, 971, 1090, 1123
LmnI GCTCC 2 cut(s) 275, 365
Lsp1109I GCAGC 4 cut(s) 229, 237, 793, 981
LweI GCATC 1 cut(s) 1067
MaeI CTAG 2 cut(s) 15, 1172
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 3 cut(s) 586, 1159, 1177
MalI GATC 6 cut(s) 431, 567, 927, 973, 1092, 1125
MboI GATC 6 cut(s) 429, 565, 925, 971, 1090, 1123
MboII GAAGA 4 cut(s) 298, 706, 845, 860
MflI RGATCY 3 cut(s) 565, 971, 1090
MhlI GDGCHC 2 cut(s) 341, 635
MlyI GAGTC 3 cut(s) 356, 583, 1082
MseI TTAA 8 cut(s) 90, 444, 579, 843, 887, 911, 1136, 1323
MspA1I CMGCKG 1 cut(s) 1079
MspI CCGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 387
NdeII GATC 6 cut(s) 429, 565, 925, 971, 1090, 1123
NlaIII CATG 7 cut(s) 181, 250, 317, 514, 565, 631, 1153
NlaIV GGNNCC 4 cut(s) 277, 338, 567, 1092
NmuCI GTSAC 1 cut(s) 586
NspI RCATGY 1 cut(s) 250
PceI AGGCCT 1 cut(s) 32
PfeI GAWTC 5 cut(s) 11, 57, 619, 949, 1131
PkrI GCNGC 5 cut(s) 219, 252, 744, 783, 996
PleI GAGTC 3 cut(s) 355, 583, 1081
PpsI GAGTC 3 cut(s) 355, 583, 1081
PsiI TTATAA 2 cut(s) 68, 1293
Psp1406I AACGTT 1 cut(s) 303
PspN4I GGNNCC 4 cut(s) 277, 338, 567, 1092
PspPI GGNCC 3 cut(s) 310, 514, 1142
PsrI GAACNNNNNNTAC 2 cut(s) 1212, 1244
PsuI RGATCY 3 cut(s) 565, 971, 1090
PvuII CAGCTG 1 cut(s) 1079
RsaI GTAC 4 cut(s) 229, 329, 907, 1230
RsaNI GTAC 4 cut(s) 228, 328, 906, 1229
SaqAI TTAA 8 cut(s) 90, 444, 579, 843, 887, 911, 1136, 1323
SatI GCNGC 5 cut(s) 218, 251, 743, 782, 995
Sau3AI GATC 6 cut(s) 429, 565, 925, 971, 1090, 1123
Sau96I GGNCC 3 cut(s) 310, 514, 1142
SchI GAGTC 3 cut(s) 356, 583, 1082
SduI GDGCHC 2 cut(s) 341, 635
SfaNI GCATC 1 cut(s) 1067
SinI GGWCC 1 cut(s) 310
SmlI CTYRAG 2 cut(s) 293, 967
SmoI CTYRAG 2 cut(s) 293, 967
SseBI AGGCCT 1 cut(s) 32
SsiI CCGC 2 cut(s) 262, 743
SspI AATATT 2 cut(s) 598, 1328
SspMI CTAG 2 cut(s) 15, 1172
StuI AGGCCT 1 cut(s) 32
StyI CCWWGG 1 cut(s) 517
TaaI ACNGT 3 cut(s) 327, 682, 1169
TaiI ACGT 1 cut(s) 306
TaqI TCGA 2 cut(s) 268, 1106
TauI GCSGC 1 cut(s) 745
TfiI GAWTC 5 cut(s) 11, 57, 619, 949, 1131
Tru1I TTAA 8 cut(s) 90, 444, 579, 843, 887, 911, 1136, 1323
Tru9I TTAA 8 cut(s) 90, 444, 579, 843, 887, 911, 1136, 1323
TscAI CASTG 5 cut(s) 162, 214, 397, 499, 1243
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 4 cut(s) 217, 250, 781, 994
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 4 cut(s) 24, 194, 1002, 1233
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 5 cut(s) 162, 214, 397, 499, 1243
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 2 cut(s) 894, 962
XbaI TCTAGA 1 cut(s) 14
XceI RCATGY 1 cut(s) 250
XspI CTAG 2 cut(s) 15, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.