Rmu_sc0007131.1_g000003

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007131.1
OG0000148
Physical Location & Seq
Forward (+)
5209 .. 5535
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007131.1_g000003.1.cds

Sequence Viewer

Length: 327 bp
atggctcaagaagtatcagatgcgaagaatatcagcttgaaggcattagtggacaaggggagaaacagagttatcttcgtagaggccgataatgatttcattgatgttctcttcagttttttgacattaccgatgggaaaaattgtcaggcttgcctgcgaccattcaacgccactggaaataggttgcatgaacaaattgtatcagagtattgagaagcttgatgtgcaggttttcaggtccaatgcatgtagagacatgttgttacttccgcacagtgcagctaactgtcattgcaagaacctcatgcaaattcaaaattattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

108

Amino Acids

12.23

Weight (kDa)

6.8

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 220
AciI CCGC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 312
AcuI CTGAAG 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 3 cut(s) 40, 168, 317
AluBI AGCT 3 cut(s) 36, 220, 284
AluI AGCT 3 cut(s) 36, 220, 284
Alw26I GTCTC 1 cut(s) 249
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 240
AvaII GGWCC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 293
BccI CCATC 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmsI GCATC 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 292
BseMI GCAATG 1 cut(s) 292
BseNI ACTGG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 293
BsgI GTGCAG 2 cut(s) 248, 300
BshFI GGCC 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 249
BsnI GGCC 1 cut(s) 86
BspACI CCGC 1 cut(s) 272
BspANI GGCC 1 cut(s) 86
BspMI ACCTGC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 292
BsrI ACTGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 278, 290
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 2 cut(s) 153, 157
BstMAI GTCTC 1 cut(s) 249
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstNSI RCATGY 2 cut(s) 252, 262
BstV1I GCAGC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 86
BtsIMutI CAGTG 2 cut(s) 173, 283
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 2 cut(s) 153, 157
Cfr13I GGNCC 1 cut(s) 240
CviAII CATG 4 cut(s) 190, 249, 259, 307
CviJI RGCY 6 cut(s) 5, 36, 86, 151, 220, 284
CviKI_1 RGCY 6 cut(s) 5, 36, 86, 151, 220, 284
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 250
FaeI CATG 4 cut(s) 193, 252, 262, 310
FaiI YATR 4 cut(s) 191, 250, 260, 308
FatI CATG 4 cut(s) 189, 248, 258, 306
Fnu4HI GCNGC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 282
GluI GCNGC 1 cut(s) 282
HaeIII GGCC 1 cut(s) 86
Hin1II CATG 4 cut(s) 193, 252, 262, 310
HindIII AAGCTT 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 19, 207
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 2 cut(s) 278, 290
HpyCH4V TGCA 6 cut(s) 189, 229, 248, 281, 297, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
Hsp92II CATG 4 cut(s) 193, 252, 262, 310
LpnPI CCDG 5 cut(s) 133, 161, 169, 215, 223
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 264
MboII GAAGA 3 cut(s) 37, 67, 103
MluCI AATT 4 cut(s) 141, 197, 312, 319
MnlI CCTC 2 cut(s) 76, 314
Mph1103I ATGCAT 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 226
NlaIII CATG 4 cut(s) 193, 252, 262, 310
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 2 cut(s) 252, 262
PciI ACATGT 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PkrI GCNGC 1 cut(s) 283
PscI ACATGT 1 cut(s) 258
PspPI GGNCC 1 cut(s) 240
SatI GCNGC 1 cut(s) 282
Sau96I GGNCC 1 cut(s) 240
SetI ASST 7 cut(s) 38, 187, 222, 234, 242, 286, 306
SfaNI GCATC 1 cut(s) 10
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 4 cut(s) 141, 197, 312, 319
SsiI CCGC 1 cut(s) 272
TaaI ACNGT 2 cut(s) 278, 290
TasI AATT 4 cut(s) 141, 197, 312, 319
TscAI CASTG 2 cut(s) 180, 283
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 88, 206
TspRI CASTG 2 cut(s) 180, 283
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 1 cut(s) 312
XceI RCATGY 2 cut(s) 252, 262
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.