RchiOBHm_Chr5g0067671

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000148
Physical Location & Seq
Forward (+)
73792426 .. 73793591
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34336

Sequence Viewer

Length: 822 bp
ATGTGTATTGAACCTCAAATGGCAGGGGAGGCAGTGATTGAGGAAGAAGAAGAGATTTCAGTGAAGCCTATGGTTAGTACGCCAAGGAAGGCATGGGAATATTTTGCTAATTTACCCTTCAGTTTCCTGACTCCTCCACGTGGATTTACACCAAAACAGATGCAAGGCTCTTCTTCAAAAGAACCCACTGTGGAAGAAGAAAAGATTTCTGTGAAGCTTATGGTCCGCAAATCAAGGAAGATGGTTTGTTTTGCAGAAGCAGGGGAAGATTTTGTCAATTTACTCTTCAGTTTCCTGACTATTCCACTCGGATTCATATTAAAACAGATGAAGTATTCTTCTTGGAAAGGATGTATTGATCAGTTGTACAAGAGTGTCCAAGATCTTGATGATGAGCAATACTTGAAGTCAAATGACCACAAGAATATTCTACTGAGTCCCAAAATTTTTCCTAGTTTTTCCTACAAGAACCATATTTTGGGAATTCAGGAGGGCAAGGCCTCATATTACTATGCTTATTGTCGTCCTAACGGTGCAGAGGATATGTTGATTACTGATAAAACCCTCATCCCTTCTCAGGTGATGTATACATTCCATCTCAAATTGGTGAATAATATAAGTTCTCAAGGATTTTTGAAAGGACCGACCATGTTCATCGTAACTGACAAGCTGGTTGTAAGGCCTATATCTCCCATCTTTGGCTTTTCCATTTTGAATGAATTGAAGGTACCTTTGGATGACATAAAGGAGGAAATAGTACAAGTTGGCAAGGGGGAGGTTTGCGTCTACTGGTGGCATCTATTGCTGGCGATTCTGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

273

Amino Acids

31.22

Weight (kDa)

6.14

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 57 - 257 2.5e-49 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 727
AccB1I GGYRCC 1 cut(s) 727
AccB7I CCANNNNNTGG 1 cut(s) 478
AccI GTMKAC 2 cut(s) 587, 786
AciI CCGC 1 cut(s) 226
AcsI RAATTY 2 cut(s) 444, 483
AcuI CTGAAG 2 cut(s) 103, 271
AcvI CACGTG 1 cut(s) 140
AfaI GTAC 4 cut(s) 79, 368, 729, 759
AfiI CCNNNNNNNGG 4 cut(s) 140, 478, 577, 698
AgsI TTSAA 6 cut(s) 11, 177, 406, 637, 715, 724
AjuI GAANNNNNNNTTGG 4 cut(s) 461, 493, 716, 748
AluBI AGCT 2 cut(s) 217, 670
AluI AGCT 2 cut(s) 217, 670
AoxI GGCC 2 cut(s) 498, 680
ApoI RAATTY 2 cut(s) 444, 483
Asp718I GGTACC 1 cut(s) 727
AspS9I GGNCC 2 cut(s) 223, 641
AsuHPI GGTGA 2 cut(s) 592, 619
AvaII GGWCC 2 cut(s) 223, 641
BanI GGYRCC 1 cut(s) 727
BbrPI CACGTG 1 cut(s) 140
BccI CCATC 3 cut(s) 235, 603, 701
BclI TGATCA 1 cut(s) 358
BfaI CTAG 1 cut(s) 453
BglII AGATCT 1 cut(s) 382
Bme18I GGWCC 2 cut(s) 223, 641
BmgT120I GGNCC 2 cut(s) 223, 641
BmiI GGNNCC 1 cut(s) 729
BmsI GCATC 2 cut(s) 150, 805
BpuEI CTTGAG 1 cut(s) 609
BsaAI YACGTR 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 4 cut(s) 140, 478, 577, 698
Bse1I ACTGG 1 cut(s) 794
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 3 cut(s) 356, 567, 742
BseLI CCNNNNNNNGG 4 cut(s) 140, 478, 577, 698
BseMII CTCAG 2 cut(s) 425, 590
BseNI ACTGG 1 cut(s) 794
BseRI GAGGAG 1 cut(s) 123
BsgI GTGCAG 1 cut(s) 555
BshFI GGCC 2 cut(s) 500, 682
BshNI GGYRCC 1 cut(s) 727
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 4 cut(s) 140, 478, 577, 698
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 2 cut(s) 500, 682
Bsp1407I TGTACA 1 cut(s) 366
Bsp143I GATC 2 cut(s) 358, 382
BspACI CCGC 1 cut(s) 226
BspANI GGCC 2 cut(s) 500, 682
BspCNI CTCAG 2 cut(s) 426, 589
BspLI GGNNCC 1 cut(s) 729
BspQI GCTCTTC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 727
BsrGI TGTACA 1 cut(s) 366
BsrI ACTGG 1 cut(s) 794
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 2 cut(s) 358, 382
BssNAI GTATAC 1 cut(s) 588
BssT1I CCWWGG 1 cut(s) 83
Bst1107I GTATAC 1 cut(s) 588
Bst4CI ACNGT 2 cut(s) 190, 533
Bst6I CTCTTC 3 cut(s) 45, 175, 290
BstAPI GCANNNNNTGC 1 cut(s) 802
BstAUI TGTACA 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 807
BstDEI CTNAG 2 cut(s) 434, 576
BstF5I GGATG 3 cut(s) 356, 567, 742
BstKTI GATC 2 cut(s) 361, 385
BstMBI GATC 2 cut(s) 358, 382
BstMWI GCNNNNNNNGC 2 cut(s) 29, 802
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BstZ17I GTATAC 1 cut(s) 588
BsuRI GGCC 2 cut(s) 500, 682
BtsCI GGATG 3 cut(s) 356, 567, 742
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 3 cut(s) 39, 66, 186
Cac8I GCNNGC 1 cut(s) 807
Cfr13I GGNCC 2 cut(s) 223, 641
CseI GACGC 1 cut(s) 772
Csp6I GTAC 4 cut(s) 78, 367, 728, 758
CviAII CATG 2 cut(s) 93, 649
CviJI RGCY 7 cut(s) 67, 168, 217, 500, 670, 682, 702
CviKI_1 RGCY 7 cut(s) 67, 168, 217, 500, 670, 682, 702
CviQI GTAC 4 cut(s) 78, 367, 728, 758
DdeI CTNAG 2 cut(s) 434, 576
DpnI GATC 2 cut(s) 360, 384
DpnII GATC 2 cut(s) 358, 382
Eam1104I CTCTTC 3 cut(s) 45, 175, 290
EarI CTCTTC 3 cut(s) 45, 175, 290
Eco130I CCWWGG 1 cut(s) 83
Eco147I AGGCCT 2 cut(s) 500, 682
Eco47I GGWCC 2 cut(s) 223, 641
Eco57I CTGAAG 2 cut(s) 103, 271
Eco72I CACGTG 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 2 cut(s) 96, 652
FaqI GGGAC 1 cut(s) 423
FatI CATG 2 cut(s) 92, 648
FbaI TGATCA 1 cut(s) 358
FblI GTMKAC 2 cut(s) 587, 786
FokI GGATG 3 cut(s) 363, 554, 749
FspBI CTAG 1 cut(s) 453
HaeIII GGCC 2 cut(s) 500, 682
HgaI GACGC 1 cut(s) 772
Hin1II CATG 2 cut(s) 96, 652
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 4 cut(s) 130, 312, 436, 811
HphI GGTGA 2 cut(s) 592, 619
Hpy166II GTNNAC 2 cut(s) 588, 787
Hpy188I TCNGA 1 cut(s) 311
Hpy188III TCNNGA 4 cut(s) 127, 295, 386, 488
Hpy8I GTNNAC 2 cut(s) 588, 787
HpyAV CCTTC 4 cut(s) 82, 127, 582, 718
HpyCH4III ACNGT 2 cut(s) 190, 533
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 3 cut(s) 163, 254, 536
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 802
HpyF3I CTNAG 2 cut(s) 434, 576
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 2 cut(s) 96, 652
KpnI GGTACC 1 cut(s) 731
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 2 cut(s) 358, 382
LguI GCTCTTC 1 cut(s) 175
LpnPI CCDG 9 cut(s) 9, 140, 246, 308, 473, 563, 656, 775, 791
LweI GCATC 2 cut(s) 150, 805
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 658
MalI GATC 2 cut(s) 360, 384
MboI GATC 2 cut(s) 358, 382
MflI RGATCY 1 cut(s) 382
MluCI AATT 6 cut(s) 109, 277, 444, 483, 602, 719
MlyI GAGTC 2 cut(s) 124, 445
MseI TTAA 2 cut(s) 320, 820
MwoI GCNNNNNNNGC 2 cut(s) 29, 802
NdeII GATC 2 cut(s) 358, 382
NlaIII CATG 2 cut(s) 96, 652
NlaIV GGNNCC 1 cut(s) 729
PceI AGGCCT 2 cut(s) 500, 682
PciSI GCTCTTC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 312, 811
PflMI CCANNNNNTGG 1 cut(s) 478
PleI GAGTC 2 cut(s) 124, 444
PmaCI CACGTG 1 cut(s) 140
PmlI CACGTG 1 cut(s) 140
PpsI GAGTC 2 cut(s) 124, 444
Ppu21I YACGTR 1 cut(s) 140
PspCI CACGTG 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 729
PspPI GGNCC 2 cut(s) 223, 641
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 4 cut(s) 79, 368, 729, 759
RsaNI GTAC 4 cut(s) 78, 367, 728, 758
SapI GCTCTTC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 320, 820
Sau3AI GATC 2 cut(s) 358, 382
Sau96I GGNCC 2 cut(s) 223, 641
SchI GAGTC 2 cut(s) 124, 445
SetI ASST 8 cut(s) 16, 142, 219, 582, 672, 729, 733, 780
SfaNI GCATC 2 cut(s) 150, 805
SinI GGWCC 2 cut(s) 223, 641
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
Sse9I AATT 6 cut(s) 109, 277, 444, 483, 602, 719
SseBI AGGCCT 2 cut(s) 500, 682
SsiI CCGC 1 cut(s) 226
SspI AATATT 2 cut(s) 101, 427
SspMI CTAG 1 cut(s) 453
StuI AGGCCT 2 cut(s) 500, 682
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 190, 533
TaiI ACGT 1 cut(s) 142
TaqII GACCGA 1 cut(s) 658
TasI AATT 6 cut(s) 109, 277, 444, 483, 602, 719
TatI WGTACW 2 cut(s) 366, 757
TfiI GAWTC 2 cut(s) 312, 811
Tru1I TTAA 2 cut(s) 320, 820
Tru9I TTAA 2 cut(s) 320, 820
TscAI CASTG 3 cut(s) 39, 66, 193
TspDTI ATGAA 4 cut(s) 304, 344, 643, 732
TspRI CASTG 3 cut(s) 39, 66, 193
Van91I CCANNNNNTGG 1 cut(s) 478
VpaK11BI GGWCC 2 cut(s) 223, 641
XapI RAATTY 2 cut(s) 444, 483
XcmI CCANNNNNNNNNTGG 1 cut(s) 90
XmiI GTMKAC 2 cut(s) 587, 786
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.