Rorug05G0385600

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000148
Physical Location & Seq
Reverse (-)
52329893 .. 52337030
7138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0385600.1

Sequence Viewer

Length: 2094 bp
ATGGATGATCTTGATTTTGAGCCTACCGGACCTGTTCGTGTTGCTGGCAGATTTCGGCCCAAGGTGAAGCCCAAGTCTACGAAAATACCATCTACTGCAGCTGCCTCTAATTTCCCTAATGTTGTAACGGAAGATTCAATCCCAGTATCTAGCACTGTCTCAGATACTGTTCCATCTACTACATCTGTTGATGTTGGAGAGGTTAAAGTAACACATCCAGTTGGTTCATCCTCAGCGACCTCAGAGATCTTAGGAAGCCTAGAGCCATCAGGAAACAATGAGCATTTATGGTCAAGTGTCCCGTCCTTGGATGGTGACAGAATCACCAAGCCTTCCGAATCAGCTGCAGCAGTTACTTTGCAACCATCAGTTATGGTTGCAGCTTCTAATGGAAGTGACGGTTCACCCTCTGTCCTTGGAAAATCAGCTAGCGAGAATGTAGACATATTCTCAGGATTGGAATGTCTTGACAATTTTCTTACCCAAACTACCAGTGGTGCAGTGCCTGCTTCCCGAAAATCCCCTGATAAGGTCAATGGGGAAAAGTGTGGTGCTCCGACACATTGCTCTGTTGAGTCTTCAGCATTCTTAGCATGTGATGTTGCAGAAGCTCAAACTATTTCTGATTATTGTGCAACACAAGATCCAGTGTCCTGCACAGAAGCTGCTATGTCCATTGAACATGGTGAAATCCGGTTAGAAACAAAGGAGTTTGAAGCTTTAGATGTTGTGTTTGAGGCTCCCATTTCAACTGGACGCCATGCTGGAAAATTTCAACCCAAGCTCAGAGTCAAAAAAGGAAAAGAGAATCCAAACATCCCTCACCCTGAAGTTGAGTCCACCATACTTCCCCAACCTGCACATTTTGAAACAGAAAGCATTGCAGAAACTACTCAGTTAGATGAGGCTGTTTATGGGGATGCTGCCTATTCAGAGGGTGTTTCTGCGAGGAGTCATAACAGTGGAAATGGAAAAGCTTCTACAGTATCAAATCGTCCTCAGAAGCGCAAAGGTTCAGCAGCCGATGAGGCTAAAGATGGGACATCAGCCAGGAAGTCAAGGAAGCGGTTACCCCATCAACAAGTTGATGATTCAGGGAACAATACTAATGAGGACAGCTTCAATGCTGAAAATTCTAGTGATTATGATGGCAATGAAGATATTGAGCATAATACAGAACGGAGAAAAAGAGCCCCAAGAAAGTCCAAGGTACCTGTATCTGAAAATGAAAAACCAGTTCAAAAGCGTAAAAGGACCAAGAAAGCACCTGATGAACCAACCAAAGAACCGACCAAAAAGAAGTTCTCCCATTCAACTCGTAGAAATAGAAGACATGTGGACAAGTCTTTGCTTGAGATCCCAGAGGATGAAATTGATCCTCAAAAAGTGCCTATGAAGGATCTTATTCGGCTAAGAGAGTATAGGGAGCGCTTAGAGATTAAAGAGGCAGCCAAGTTGAAAACTCCAGCGTCTGATCAAAGTGTTAATGACGAGTTTCATATGGAAGCTTCTCATAATGAAGAGGAGAACTTTGGTTTTGAACACAGAAGCTCTGATGAAAATCAAGTACGTTACAGGGATAGGGTTAGCACAAGTTCCTCTAGCTTCAATTACCAGTCTTTTATGAAAAAACAACGCCCTGCAAAATGGTATGAACAAGACACGAAACTTTTCTATGAGGGTATTGAGCAGTTCGGATCCGATTTTAGTATGGTTGCACTACTTTTTCCTGGTCGAACACGTGATCAAATCAAGTTTAAGTTCAAGAAGGAAGTTCGTCACAATCCATTACGTATCAATGAAGCCTTTCGCCGTCAATCGAAAGACAATTCCAAATATGTCTTGGTGATTAATGAGCTGCAAAAAGGTGCTCGGGAAAAGCTGGAGTCTAATGCAGATGAGTCGAGTGACATGGCAGGCCAGGAGGAGGGGGAAGTGGCAAAACCTGAGTTGGATAAAATTGAAGATATGGAAACTGATGTTGCTGCCGAAGGTCAACACAGGGAACCTGCTGTTGCTGAAGTACATAGTCCGATGAAGTCTGATCAAAGTGATGATGGTGACGGTTTTGGCGGTTGGGATGACGACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

697

Amino Acids

76.98

Weight (kDa)

5.38

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_7 PF15963 540 - 622 3.7e-24 Myb DNA-binding like
Myb_DNA-binding PF00249 549 - 590 1.9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 865, 2017
Acc65I GGTACC 1 cut(s) 1210
AccB1I GGYRCC 1 cut(s) 1210
AccI GTMKAC 2 cut(s) 77, 441
AciI CCGC 2 cut(s) 1066, 2073
AclWI GGATC 6 cut(s) 638, 1351, 1370, 1407, 1692, 1705
AcsI RAATTY 2 cut(s) 770, 1132
AcuI CTGAAG 3 cut(s) 564, 849, 2040
AcvI CACGTG 1 cut(s) 1742
AcyI GRCGYC 1 cut(s) 757
AfaI GTAC 3 cut(s) 1212, 1569, 2025
AfeI AGCGCT 1 cut(s) 1430
AfiI CCNNNNNNNGG 3 cut(s) 307, 529, 1927
AflIII ACRYGT 2 cut(s) 1333, 1739
AjnI CCWGG 3 cut(s) 1049, 1729, 1920
AjuI GAANNNNNNNTTGG 2 cut(s) 1286, 1318
Alw21I GWGCWC 2 cut(s) 556, 1873
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 6 cut(s) 638, 1351, 1370, 1407, 1692, 1705
AlwNI CAGNNNCTG 4 cut(s) 167, 506, 665, 1472
Ama87I CYCGRG 1 cut(s) 1872
Aor51HI AGCGCT 1 cut(s) 1430
AoxI GGCC 2 cut(s) 56, 1918
ApoI RAATTY 2 cut(s) 770, 1132
AseI ATTAAT 1 cut(s) 1851
Asp700I GAANNNNTTC 3 cut(s) 976, 1670, 1806
Asp718I GGTACC 1 cut(s) 1210
AspLEI GCGC 2 cut(s) 1008, 1431
AspS9I GGNCC 3 cut(s) 29, 57, 1254
AsuHPI GGTGA 8 cut(s) 76, 316, 326, 396, 698, 815, 1858, 2072
AsuNHI GCTAGC 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 1872
AvaII GGWCC 2 cut(s) 29, 1254
BamHI GGATCC 1 cut(s) 1697
BanI GGYRCC 1 cut(s) 1210
BanII GRGCYC 1 cut(s) 1195
BbrPI CACGTG 1 cut(s) 1742
BbsI GAAGAC 2 cut(s) 570, 1336
Bbv12I GWGCWC 2 cut(s) 556, 1873
BbvCI CCTCAGC 1 cut(s) 232
BccI CCATC 9 cut(s) 97, 181, 274, 305, 373, 1031, 1083, 1142, 2051
BceAI ACGGC 1 cut(s) 1797
BcgI CGANNNNNNTGC 4 cut(s) 326, 360, 1884, 1918
BciT130I CCWGG 3 cut(s) 1051, 1731, 1922
BclI TGATCA 3 cut(s) 1474, 1744, 2044
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 5 cut(s) 150, 260, 429, 1137, 1602
BfmI CTRYAG 3 cut(s) 96, 345, 981
BfoI RGCGCY 1 cut(s) 1432
BfuAI ACCTGC 2 cut(s) 865, 2017
BglI GCCNNNNNGGC 1 cut(s) 1028
BglII AGATCT 1 cut(s) 246
Bme1390I CCNGG 3 cut(s) 1051, 1731, 1922
Bme18I GGWCC 2 cut(s) 29, 1254
BmeT110I CYCGRG 1 cut(s) 1872
BmgT120I GGNCC 3 cut(s) 29, 57, 1254
BmiI GGNNCC 4 cut(s) 741, 1212, 1699, 2007
BmrFI CCNGG 3 cut(s) 1051, 1731, 1922
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 1 cut(s) 910
BmtI GCTAGC 1 cut(s) 432
BmuI ACTGGG 1 cut(s) 137
BpiI GAAGAC 2 cut(s) 570, 1336
BpmI CTGGAG 2 cut(s) 1449, 1904
Bpu10I CCTNAGC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 1373
BsaAI YACGTR 2 cut(s) 1742, 1793
BsaBI GATNNNNATC 1 cut(s) 1560
BsaHI GRCGYC 1 cut(s) 757
BsaJI CCNNGG 4 cut(s) 60, 306, 415, 1206
BsaWI WCCGGW 2 cut(s) 26, 693
Bsc4I CCNNNNNNNGG 3 cut(s) 307, 529, 1927
Bse1I ACTGG 7 cut(s) 143, 218, 492, 647, 757, 1235, 1615
Bse3DI GCAATG 3 cut(s) 562, 879, 1159
Bse8I GATNNNNATC 1 cut(s) 1560
BseBI CCWGG 3 cut(s) 1051, 1731, 1922
BseDI CCNNGG 4 cut(s) 60, 306, 415, 1206
BseGI GGATG 8 cut(s) 10, 214, 227, 316, 816, 925, 1372, 2086
BseJI GATNNNNATC 1 cut(s) 1560
BseLI CCNNNNNNNGG 3 cut(s) 307, 529, 1927
BseMI GCAATG 3 cut(s) 562, 879, 1159
BseMII CTCAG 8 cut(s) 174, 246, 255, 465, 799, 908, 1013, 1938
BseNI ACTGG 7 cut(s) 143, 218, 492, 647, 757, 1235, 1615
BseRI GAGGAG 3 cut(s) 964, 1538, 1940
BsgI GTGCAG 3 cut(s) 519, 640, 843
BshFI GGCC 2 cut(s) 58, 1920
BshNI GGYRCC 1 cut(s) 1210
BsiHKAI GWGCWC 2 cut(s) 556, 1873
BsiHKCI CYCGRG 1 cut(s) 1872
BsiSI CCGG 2 cut(s) 27, 694
BslFI GGGAC 2 cut(s) 284, 1054
BslI CCNNNNNNNGG 3 cut(s) 307, 529, 1927
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 2 cut(s) 284, 1054
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 2 cut(s) 58, 1920
BsoBI CYCGRG 1 cut(s) 1872
Bsp1286I GDGCHC 3 cut(s) 556, 1195, 1873
BspACI CCGC 2 cut(s) 1066, 2073
BspANI GGCC 2 cut(s) 58, 1920
BspCNI CTCAG 8 cut(s) 173, 245, 254, 464, 798, 907, 1012, 1939
BspLI GGNNCC 4 cut(s) 741, 1212, 1699, 2007
BspMAI CTGCAG 2 cut(s) 100, 349
BspMI ACCTGC 2 cut(s) 865, 2017
BspOI GCTAGC 1 cut(s) 432
BspPI GGATC 6 cut(s) 638, 1351, 1370, 1407, 1692, 1705
BspT107I GGYRCC 1 cut(s) 1210
BsrDI GCAATG 3 cut(s) 562, 879, 1159
BsrI ACTGG 7 cut(s) 143, 218, 492, 647, 757, 1235, 1615
BssECI CCNNGG 4 cut(s) 60, 306, 415, 1206
BssNI GRCGYC 1 cut(s) 757
BssT1I CCWWGG 4 cut(s) 60, 306, 415, 1206
Bst2UI CCWGG 3 cut(s) 1051, 1731, 1922
Bst4CI ACNGT 6 cut(s) 157, 169, 401, 962, 985, 2066
Bst6I CTCTTC 1 cut(s) 1515
BstACI GRCGYC 1 cut(s) 757
BstAPI GCANNNNNTGC 1 cut(s) 506
BstBAI YACGTR 2 cut(s) 1742, 1793
BstC8I GCNNGC 4 cut(s) 46, 430, 507, 1918
BstEII GGTNACC 1 cut(s) 1068
BstF5I GGATG 8 cut(s) 10, 214, 227, 316, 816, 925, 1372, 2086
BstH2I RGCGCY 1 cut(s) 1432
BstHHI GCGC 2 cut(s) 1008, 1431
BstMAI GTCTC 1 cut(s) 163
BstMWI GCNNNNNNNGC 3 cut(s) 506, 590, 1028
BstNI CCWGG 3 cut(s) 1051, 1731, 1922
BstNSI RCATGY 2 cut(s) 597, 1337
BstPI GGTNACC 1 cut(s) 1068
BstSCI CCNGG 3 cut(s) 1049, 1729, 1920
BstSFI CTRYAG 3 cut(s) 96, 345, 981
BstSNI TACGTA 1 cut(s) 1793
BstV2I GAAGAC 2 cut(s) 570, 1336
BstX2I RGATCY 5 cut(s) 246, 643, 1356, 1399, 1697
BstYI RGATCY 5 cut(s) 246, 643, 1356, 1399, 1697
BsuRI GGCC 2 cut(s) 58, 1920
BtsCI GGATG 8 cut(s) 10, 214, 227, 316, 816, 925, 1372, 2086
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 5 cut(s) 153, 499, 507, 654, 967
BveI ACCTGC 2 cut(s) 865, 2017
Cac8I GCNNGC 4 cut(s) 46, 430, 507, 1918
CaiI CAGNNNCTG 4 cut(s) 167, 506, 665, 1472
CfoI GCGC 2 cut(s) 1008, 1431
Cfr13I GGNCC 3 cut(s) 29, 57, 1254
CseI GACGC 2 cut(s) 765, 1458
Csp6I GTAC 3 cut(s) 1211, 1568, 2024
CviAII CATG 5 cut(s) 594, 683, 761, 1334, 1912
CviQI GTAC 3 cut(s) 1211, 1568, 2024
Eam1104I CTCTTC 1 cut(s) 1515
EarI CTCTTC 1 cut(s) 1515
Eco105I TACGTA 1 cut(s) 1793
Eco130I CCWWGG 4 cut(s) 60, 306, 415, 1206
Eco24I GRGCYC 1 cut(s) 1195
Eco47I GGWCC 2 cut(s) 29, 1254
Eco47III AGCGCT 1 cut(s) 1430
Eco57I CTGAAG 3 cut(s) 564, 849, 2040
Eco72I CACGTG 1 cut(s) 1742
Eco88I CYCGRG 1 cut(s) 1872
Eco91I GGTNACC 1 cut(s) 1068
EcoO65I GGTNACC 1 cut(s) 1068
EcoRII CCWGG 3 cut(s) 1049, 1729, 1920
EcoT14I CCWWGG 4 cut(s) 60, 306, 415, 1206
EcoT38I GRGCYC 1 cut(s) 1195
ErhI CCWWGG 4 cut(s) 60, 306, 415, 1206
FaeI CATG 5 cut(s) 597, 686, 764, 1337, 1915
FaqI GGGAC 2 cut(s) 284, 1054
FatI CATG 5 cut(s) 593, 682, 760, 1333, 1911
FauNDI CATATG 1 cut(s) 1500
FbaI TGATCA 3 cut(s) 1474, 1744, 2044
FblI GTMKAC 2 cut(s) 77, 441
FokI GGATG 7 cut(s) 17, 201, 214, 323, 803, 932, 1379
FriOI GRGCYC 1 cut(s) 1195
FspBI CTAG 5 cut(s) 150, 260, 429, 1137, 1602
GlaI GCGC 2 cut(s) 1007, 1430
GsuI CTGGAG 2 cut(s) 1449, 1904
HaeII RGCGCY 1 cut(s) 1432
HaeIII GGCC 2 cut(s) 58, 1920
HapII CCGG 2 cut(s) 27, 694
HgaI GACGC 2 cut(s) 765, 1458
HhaI GCGC 2 cut(s) 1008, 1431
Hin1I GRCGYC 1 cut(s) 757
Hin1II CATG 5 cut(s) 597, 686, 764, 1337, 1915
Hin6I GCGC 2 cut(s) 1006, 1429
HinP1I GCGC 2 cut(s) 1006, 1429
HincII GTYRAC 1 cut(s) 1997
HindII GTYRAC 1 cut(s) 1997
HindIII AAGCTT 3 cut(s) 717, 975, 1506
HpaII CCGG 2 cut(s) 27, 694
HphI GGTGA 8 cut(s) 76, 316, 326, 396, 698, 815, 1858, 2072
Hpy166II GTNNAC 6 cut(s) 78, 404, 442, 840, 1339, 1997
Hpy188III TCNNGA 7 cut(s) 11, 270, 453, 467, 513, 1765, 1874
Hpy8I GTNNAC 6 cut(s) 78, 404, 442, 840, 1339, 1997
HpyAV CCTTC 4 cut(s) 342, 1390, 1762, 1985
HpyCH4III ACNGT 6 cut(s) 157, 169, 401, 962, 985, 2066
HpyCH4IV ACGT 3 cut(s) 1570, 1741, 1792
HpyF10VI GCNNNNNNNGC 3 cut(s) 506, 590, 1028
HpySE526I ACGT 3 cut(s) 1570, 1741, 1792
Hsp92I GRCGYC 1 cut(s) 757
Hsp92II CATG 5 cut(s) 597, 686, 764, 1337, 1915
HspAI GCGC 2 cut(s) 1006, 1429
KpnI GGTACC 1 cut(s) 1214
Ksp22I TGATCA 3 cut(s) 1474, 1744, 2044
LmnI GCTCC 3 cut(s) 559, 745, 1426
LweI GCATC 1 cut(s) 910
MaeI CTAG 5 cut(s) 150, 260, 429, 1137, 1602
MaeII ACGT 3 cut(s) 1570, 1741, 1792
MboII GAAGA 6 cut(s) 143, 570, 1169, 1341, 1532, 1976
MflI RGATCY 5 cut(s) 246, 643, 1356, 1399, 1697
MhlI GDGCHC 3 cut(s) 556, 1195, 1873
MluCI AATT 8 cut(s) 109, 472, 770, 1132, 1371, 1609, 1828, 1959
MlyI GAGTC 6 cut(s) 584, 798, 845, 961, 1895, 1910
MmeI TCCRAC 3 cut(s) 175, 581, 1932
MroXI GAANNNNTTC 3 cut(s) 976, 1670, 1806
MseI TTAA 5 cut(s) 204, 1440, 1485, 1758, 1851
MslI CAYNNNNRTG 1 cut(s) 960
MspA1I CMGCKG 2 cut(s) 101, 344
MspI CCGG 2 cut(s) 27, 694
MspR9I CCNGG 3 cut(s) 1051, 1731, 1922
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 3 cut(s) 1051, 1731, 1922
MwoI GCNNNNNNNGC 3 cut(s) 506, 590, 1028
NdeI CATATG 1 cut(s) 1500
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 5 cut(s) 597, 686, 764, 1337, 1915
NlaIV GGNNCC 4 cut(s) 741, 1212, 1699, 2007
NmuCI GTSAC 5 cut(s) 314, 395, 1778, 1907, 2060
NspI RCATGY 2 cut(s) 597, 1337
PciI ACATGT 1 cut(s) 1333
PctI GAATGC 1 cut(s) 584
PdmI GAANNNNTTC 3 cut(s) 976, 1670, 1806
PfeI GAWTC 5 cut(s) 134, 321, 338, 808, 1091
PleI GAGTC 6 cut(s) 583, 797, 844, 960, 1894, 1909
PmaCI CACGTG 1 cut(s) 1742
PmlI CACGTG 1 cut(s) 1742
PpsI GAGTC 6 cut(s) 583, 797, 844, 960, 1894, 1909
Ppu21I YACGTR 2 cut(s) 1742, 1793
PscI ACATGT 1 cut(s) 1333
PshBI ATTAAT 1 cut(s) 1851
Psp6I CCWGG 3 cut(s) 1049, 1729, 1920
PspCI CACGTG 1 cut(s) 1742
PspEI GGTNACC 1 cut(s) 1068
PspGI CCWGG 3 cut(s) 1049, 1729, 1920
PspN4I GGNNCC 4 cut(s) 741, 1212, 1699, 2007
PspPI GGNCC 3 cut(s) 29, 57, 1254
PstI CTGCAG 2 cut(s) 100, 349
PstNI CAGNNNCTG 4 cut(s) 167, 506, 665, 1472
PsuI RGATCY 5 cut(s) 246, 643, 1356, 1399, 1697
PvuII CAGCTG 2 cut(s) 101, 344
RsaI GTAC 3 cut(s) 1212, 1569, 2025
RsaNI GTAC 3 cut(s) 1211, 1568, 2024
RseI CAYNNNNRTG 1 cut(s) 960
SaqAI TTAA 5 cut(s) 204, 1440, 1485, 1758, 1851
Sau96I GGNCC 3 cut(s) 29, 57, 1254
SchI GAGTC 6 cut(s) 584, 798, 845, 961, 1895, 1910
ScrFI CCNGG 3 cut(s) 1051, 1731, 1922
SduI GDGCHC 3 cut(s) 556, 1195, 1873
SfaNI GCATC 1 cut(s) 910
SfcI CTRYAG 3 cut(s) 96, 345, 981
SinI GGWCC 2 cut(s) 29, 1254
SmiMI CAYNNNNRTG 1 cut(s) 960
SmlI CTYRAG 1 cut(s) 1352
SmoI CTYRAG 1 cut(s) 1352
SnaBI TACGTA 1 cut(s) 1793
Sse9I AATT 8 cut(s) 109, 472, 770, 1132, 1371, 1609, 1828, 1959
SsiI CCGC 2 cut(s) 1066, 2073
SspMI CTAG 5 cut(s) 150, 260, 429, 1137, 1602
StyD4I CCNGG 3 cut(s) 1049, 1729, 1920
StyI CCWWGG 4 cut(s) 60, 306, 415, 1206
TaaI ACNGT 6 cut(s) 157, 169, 401, 962, 985, 2066
TaiI ACGT 3 cut(s) 1573, 1744, 1795
TaqI TCGA 3 cut(s) 1735, 1820, 1904
TasI AATT 8 cut(s) 109, 472, 770, 1132, 1371, 1609, 1828, 1959
TatI WGTACW 1 cut(s) 2023
TfiI GAWTC 5 cut(s) 134, 321, 338, 808, 1091
Tru1I TTAA 5 cut(s) 204, 1440, 1485, 1758, 1851
Tru9I TTAA 5 cut(s) 204, 1440, 1485, 1758, 1851
TscAI CASTG 5 cut(s) 160, 499, 507, 654, 967
TseFI GTSAC 5 cut(s) 314, 395, 1778, 1907, 2060
Tsp45I GTSAC 5 cut(s) 314, 395, 1778, 1907, 2060
TspGWI ACGGA 2 cut(s) 143, 1195
TspRI CASTG 5 cut(s) 160, 499, 507, 654, 967
VpaK11BI GGWCC 2 cut(s) 29, 1254
VspI ATTAAT 1 cut(s) 1851
XapI RAATTY 2 cut(s) 770, 1132
XceI RCATGY 2 cut(s) 597, 1337
XcmI CCANNNNNNNNNTGG 2 cut(s) 491, 1840
XmiI GTMKAC 2 cut(s) 77, 441
XmnI GAANNNNTTC 3 cut(s) 976, 1670, 1806
XspI CTAG 5 cut(s) 150, 260, 429, 1137, 1602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.