RchiOBHm_Chr5g0067831

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000148
Physical Location & Seq
Forward (+)
73881546 .. 73882678
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34350

Sequence Viewer

Length: 291 bp
ATGCCATCAGTGACTACTGTCCCACTTAAACTCAATTATTGCGAGGCTCAATATGACACCGTACGTGATCAAGGATTTTTGAATGGACCGACAATGTTTACAATTACTGACAATCTGATCACAAGGCCCATATCTCCTCTATTTGGCCTTTCTGTTTTAAACGAAATGATGGTACTATTCACTGATATTGAGGAGCAAATTGTGCAGGCTTTTGGCCTTTTGGTAACATCTTTTCTTTGTGACTCTTCTCTCACCAGCGTCTACCTTAGGCAGCCAAAGAGAGAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

96

Amino Acids

10.85

Weight (kDa)

4.46

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 17 - 69 2.3e-08 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 261
AfaI GTAC 2 cut(s) 63, 174
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 1 cut(s) 82
AoxI GGCC 3 cut(s) 125, 145, 214
ApeKI GCWGC 1 cut(s) 271
AspS9I GGNCC 2 cut(s) 86, 126
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 1 cut(s) 86
AxyI CCTNAGG 1 cut(s) 266
BbvI GCAGC 1 cut(s) 283
BccI CCATC 2 cut(s) 13, 163
BclI TGATCA 2 cut(s) 67, 117
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 2 cut(s) 86, 126
BoxI GACNNNNGTC 1 cut(s) 17
BsaAI YACGTR 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse21I CCTNAGG 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 143
BseRI GAGGAG 2 cut(s) 126, 206
BseXI GCAGC 1 cut(s) 283
BsgI GTGCAG 1 cut(s) 224
BshFI GGCC 3 cut(s) 127, 147, 216
BsiWI CGTACG 1 cut(s) 61
BslFI GGGAC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 5
BsnI GGCC 3 cut(s) 127, 147, 216
Bsp143I GATC 2 cut(s) 67, 117
BspANI GGCC 3 cut(s) 127, 147, 216
BssMI GATC 2 cut(s) 67, 117
Bst4CI ACNGT 2 cut(s) 19, 61
Bst6I CTCTTC 1 cut(s) 250
BstAPI GCANNNNNTGC 1 cut(s) 202
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 266
BstKTI GATC 2 cut(s) 70, 120
BstMBI GATC 2 cut(s) 67, 117
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstPAI GACNNNNGTC 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 283
Bsu36I CCTNAGG 1 cut(s) 266
BsuRI GGCC 3 cut(s) 127, 147, 216
BtsIMutI CAGTG 2 cut(s) 15, 180
Cac8I GCNNGC 1 cut(s) 207
Cfr13I GGNCC 2 cut(s) 86, 126
CseI GACGC 1 cut(s) 247
Csp6I GTAC 2 cut(s) 62, 173
CviJI RGCY 6 cut(s) 47, 127, 147, 209, 216, 274
CviKI_1 RGCY 6 cut(s) 47, 127, 147, 209, 216, 274
CviQI GTAC 2 cut(s) 62, 173
DdeI CTNAG 1 cut(s) 266
DpnI GATC 2 cut(s) 69, 119
DpnII GATC 2 cut(s) 67, 117
DraI TTTAAA 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 86
Eco81I CCTNAGG 1 cut(s) 266
FaiI YATR 2 cut(s) 54, 131
FaqI GGGAC 1 cut(s) 5
FbaI TGATCA 2 cut(s) 67, 117
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 272
GluI GCNGC 1 cut(s) 272
HaeIII GGCC 3 cut(s) 127, 147, 216
HgaI GACGC 1 cut(s) 247
HinfI GANTC 1 cut(s) 242
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 2 cut(s) 99, 262
Hpy188I TCNGA 1 cut(s) 117
Hpy8I GTNNAC 2 cut(s) 99, 262
HpyCH4III ACNGT 2 cut(s) 19, 61
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 64
Ksp22I TGATCA 2 cut(s) 67, 117
Kzo9I GATC 2 cut(s) 67, 117
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 2 cut(s) 191, 268
Lsp1109I GCAGC 1 cut(s) 283
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 3 cut(s) 10, 223, 239
MalI GATC 2 cut(s) 69, 119
MboI GATC 2 cut(s) 67, 117
MboII GAAGA 1 cut(s) 237
MluCI AATT 3 cut(s) 34, 102, 198
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 3 cut(s) 37, 147, 184
MseI TTAA 2 cut(s) 27, 158
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 2 cut(s) 67, 117
NmuCI GTSAC 2 cut(s) 10, 239
Pfl23II CGTACG 1 cut(s) 61
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Ppu21I YACGTR 1 cut(s) 65
PshAI GACNNNNGTC 1 cut(s) 17
PspLI CGTACG 1 cut(s) 61
PspPI GGNCC 2 cut(s) 86, 126
RsaI GTAC 2 cut(s) 63, 174
RsaNI GTAC 2 cut(s) 62, 173
SaqAI TTAA 2 cut(s) 27, 158
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 2 cut(s) 67, 117
Sau96I GGNCC 2 cut(s) 86, 126
SchI GAGTC 1 cut(s) 236
SetI ASST 2 cut(s) 67, 267
SgeI CNNG 6 cut(s) 55, 77, 83, 135, 218, 267
SinI GGWCC 1 cut(s) 86
Sse9I AATT 3 cut(s) 34, 102, 198
TaaI ACNGT 2 cut(s) 19, 61
TaiI ACGT 1 cut(s) 67
TaqII GACCGA 1 cut(s) 103
TasI AATT 3 cut(s) 34, 102, 198
Tru1I TTAA 2 cut(s) 27, 158
Tru9I TTAA 2 cut(s) 27, 158
TscAI CASTG 2 cut(s) 15, 187
TseFI GTSAC 2 cut(s) 10, 239
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 2 cut(s) 10, 239
TspRI CASTG 2 cut(s) 15, 187
VpaK11BI GGWCC 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.