Rroxscaffold_1G00013550

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000148
Physical Location & Seq
Reverse (-)
16642250 .. 16643909
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013550.1

Sequence Viewer

Length: 543 bp
ATGCTGGATTCCCCTTGGAAAGGATGTAGTGATCATTTGTGCAAGGGTGTCCTGGATTTTGATGAGCAATTTTTTAAGTCAAATTATCACAAGGAATTGCTATGCAATCCCAAACTTGTTCCTGGGTTCAGCTATGAGAACAATCTTTTAGGAATTGAGGAGGCCGTGTACTATAGGTTTGCTAAACGTAAGTTAACTGCTGATAGATCCATTATCCCTTCGACATCCTTGGAGGCACTTAAAATTCAATTTTTGGATCCCAAATCCCATGGTGATAAAGATAGAAATGCTAGGGGATTCTTAAAAGAACCAGCAATTTTCACAGTAACTGACAATTTGGATGTAAGGCGAGTATCTCCAATCTTTCAATTGTCTGTTCTTAATGATTTGAAGGTACATTTCACTGATATTGAGTATCCAACTGTGCATGTTGGCAAGAACGAGGCTTTGCGTCTTTTGGTGGCTTCTGTTGTTTCTGACTCAATTCTAACCAATGCTTTCCTACTGAAGCCAAAGGAGCCATTGGTTAAACAAGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

180

Amino Acids

20.51

Weight (kDa)

6.96

Isoelectric Point (pI)

32.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 7 - 146 4.3e-21 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11145 AT3G09110 AT3G09120 AT3G09140 AT3G09140 AT5G01120 AT5G01130 AT5G01140 AT5G01150 AT5G37320 AT5G43240 AT5G43240 AT5G43240 AT5G43240
fragaria_vesca FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37570 FvH4_3g37580 FvH4_3g37580 FvH4_3g37590 FvH4_3g37590 FvH4_3g37590 FvH4_3g37601 FvH4_3g37610 FvH4_3g37610 FvH4_3g37640 FvH4_3g37640 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430 FvH4_6g48430
malus_domestica MD03G1079100.v1.1 MD03G1079200.v1.1 MD03G1079300.v1.1 MD03G1079500.v1.1 MD03G1079600.v1.1 MD03G1079700.v1.1 MD03G1079800.v1.1 MD11G1083300.v1.1 MD11G1083400.v1.1 MD11G1083500.v1.1 MD11G1083600.v1.1 MD11G1083700.v1.1 MD11G1083900.v1.1 MD11G1084000.v1.1 MD11G1084200.v1.1 MD11G1084300.v1.1
prunus_persica Prupe.1G077500_v2.0.a1 Prupe.6G063700_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063800_v2.0.a1 Prupe.6G063900_v2.0.a1 Prupe.6G064000_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064100_v2.0.a1 Prupe.6G064300_v2.0.a1 Prupe.6G064400_v2.0.a1
pyrus_communis pycom03g06310 pycom03g06320 pycom03g06330 pycom03g06340 pycom03g06350 pycom11g07140 pycom11g07160 pycom11g07170 pycom11g07190 pycom11g07200 pycom11g07230 pycom11g07240 pycom11g07250 pycom11g07260 pycom11g07270 pycom11g07280
rosa_chinensis RchiOBHm_Chr3g0490491 RchiOBHm_Chr5g0055481 RchiOBHm_Chr5g0067411 RchiOBHm_Chr5g0067441 RchiOBHm_Chr5g0067471 RchiOBHm_Chr5g0067491 RchiOBHm_Chr5g0067511 RchiOBHm_Chr5g0067521 RchiOBHm_Chr5g0067571 RchiOBHm_Chr5g0067581 RchiOBHm_Chr5g0067661 RchiOBHm_Chr5g0067671 RchiOBHm_Chr5g0067691 RchiOBHm_Chr5g0067721 RchiOBHm_Chr5g0067751 RchiOBHm_Chr5g0067801 RchiOBHm_Chr5g0067821 RchiOBHm_Chr5g0067831 RchiOBHm_Chr5g0067841 RchiOBHm_Chr5g0067861 RchiOBHm_Chr5g0067891 RchiOBHm_Chr5g0068351 RchiOBHm_Chr6g0278351
rosa_laevigata RLG00000013235 RLG00000022886 RLG00000035934 RLG00000035935 RLG00000035936 RLG00000035938 RLG00000035939 RLG00000035940 RLG00000035942 RLG00000035968
rosa_multiflora Rmu_sc0000230.1_g000001 Rmu_sc0000435.1_g000052 Rmu_sc0000435.1_g000053 Rmu_sc0000435.1_g000057 Rmu_sc0000435.1_g000067 Rmu_sc0000435.1_g000080 Rmu_sc0001016.1_g000006 Rmu_sc0001418.1_g000006 Rmu_sc0001418.1_g000008 Rmu_sc0002253.1_g000012 Rmu_sc0002253.1_g000013 Rmu_sc0002253.1_g000038 Rmu_sc0002253.1_g000039 Rmu_sc0002253.1_g000044 Rmu_sc0002489.1_g000055 Rmu_sc0003862.1_g000013 Rmu_sc0007131.1_g000003 Rmu_sc0007131.1_g000004 Rmu_sc0008054.1_g000001 Rmu_sc0009958.1_g000001 Rmu_sc0016063.1_g000001 Rmu_sc0022825.1_g000001
rosa_roxburghii Rroxscaffold_1G00012750 Rroxscaffold_1G00012810 Rroxscaffold_1G00012820 Rroxscaffold_1G00012860 Rroxscaffold_1G00012880 Rroxscaffold_1G00012920 Rroxscaffold_1G00012930 Rroxscaffold_1G00012940 Rroxscaffold_1G00013430 Rroxscaffold_1G00013440 Rroxscaffold_1G00013460 Rroxscaffold_1G00013510 Rroxscaffold_1G00013530 Rroxscaffold_1G00013550 Rroxscaffold_1G00013570 Rroxscaffold_1G00013580 Rroxscaffold_1G00013610 Rroxscaffold_1G00013620 Rroxscaffold_1G00013630 Rroxscaffold_1G00013680 Rroxscaffold_7G00190460
rosa_rugosa Rorug05G0192300 Rorug05G0192400 Rorug05G0192500 Rorug05G0192600 Rorug05G0192700 Rorug05G0384600 Rorug05G0385300 Rorug05G0385400 Rorug05G0385400 Rorug05G0385500 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385600 Rorug05G0385800 Rorug05G0386000 Rorug05G0389000 Rorug05G0389100 Rorug05G0397000 Rorug05G0397100
rosa_samantha Rh5BG461400 Rh5BG461600 Rh5BG461700 Rh5BG461900 Rh5BG462100 Rh6AG225700 Rh6AG225800
rosa_wichuraiana Rw0G017720 Rw3G025960 Rw5G041500 Rw5G041510 Rw5G041520 Rw5G041530 Rw5G041540 Rw5G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 201, 251, 264
AcsI RAATTY 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 527
AfaI GTAC 2 cut(s) 170, 396
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 3 cut(s) 248, 368, 391
AjnI CCWGG 2 cut(s) 51, 121
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
AlwI GGATC 3 cut(s) 201, 251, 264
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 284
BamHI GGATCC 1 cut(s) 256
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 2 cut(s) 53, 123
BciVI GTATCC 1 cut(s) 426
BclI TGATCA 1 cut(s) 31
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 172
BfuI GTATCC 1 cut(s) 426
Bme1390I CCNGG 2 cut(s) 53, 123
BmiI GGNNCC 2 cut(s) 258, 519
BmrFI CCNGG 2 cut(s) 53, 123
BsaJI CCNNGG 4 cut(s) 14, 122, 228, 268
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 20
BseBI CCWGG 2 cut(s) 53, 123
BseDI CCNNGG 4 cut(s) 14, 122, 228, 268
BseGI GGATG 3 cut(s) 29, 224, 346
BseLI CCNNNNNNNGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 173
BshFI GGCC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 20
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 3 cut(s) 31, 206, 256
Bsp19I CCATGG 1 cut(s) 268
BspANI GGCC 1 cut(s) 164
BspLI GGNNCC 2 cut(s) 258, 519
BspPI GGATC 3 cut(s) 201, 251, 264
BssECI CCNNGG 4 cut(s) 14, 122, 228, 268
BssMI GATC 3 cut(s) 31, 206, 256
BssT1I CCWWGG 3 cut(s) 14, 228, 268
Bst2UI CCWGG 2 cut(s) 53, 123
Bst4CI ACNGT 2 cut(s) 325, 424
BstDSI CCRYGG 1 cut(s) 268
BstENI CCTNNNNNAGG 1 cut(s) 18
BstF5I GGATG 3 cut(s) 29, 224, 346
BstKTI GATC 3 cut(s) 34, 209, 259
BstMBI GATC 3 cut(s) 31, 206, 256
BstMWI GCNNNNNNNGC 1 cut(s) 517
BstNI CCWGG 2 cut(s) 53, 123
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 2 cut(s) 51, 121
BstSFI CTRYAG 1 cut(s) 172
BstX2I RGATCY 2 cut(s) 206, 256
BstYI RGATCY 2 cut(s) 206, 256
BsuI GTATCC 1 cut(s) 426
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 268
BtsCI GGATG 3 cut(s) 29, 224, 346
BtsIMutI CAGTG 1 cut(s) 402
CaiI CAGNNNCTG 1 cut(s) 329
CseI GACGC 1 cut(s) 440
Csp6I GTAC 2 cut(s) 169, 395
CviAII CATG 2 cut(s) 269, 428
CviJI RGCY 6 cut(s) 132, 164, 446, 464, 511, 520
CviKI_1 RGCY 6 cut(s) 132, 164, 446, 464, 511, 520
CviQI GTAC 2 cut(s) 169, 395
DpnI GATC 3 cut(s) 33, 208, 258
DpnII GATC 3 cut(s) 31, 206, 256
Eco130I CCWWGG 3 cut(s) 14, 228, 268
Eco57I CTGAAG 1 cut(s) 527
EcoNI CCTNNNNNAGG 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 51, 121
EcoT14I CCWWGG 3 cut(s) 14, 228, 268
ErhI CCWWGG 3 cut(s) 14, 228, 268
FaeI CATG 2 cut(s) 272, 431
FaiI YATR 5 cut(s) 103, 135, 174, 270, 429
FatI CATG 2 cut(s) 268, 427
FbaI TGATCA 1 cut(s) 31
FokI GGATG 3 cut(s) 36, 211, 353
FspBI CTAG 1 cut(s) 291
HaeIII GGCC 1 cut(s) 164
HgaI GACGC 1 cut(s) 440
Hin1II CATG 2 cut(s) 272, 431
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 3 cut(s) 8, 297, 479
HpaI GTTAAC 1 cut(s) 195
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 2 cut(s) 169, 195
Hpy188I TCNGA 1 cut(s) 478
Hpy8I GTNNAC 2 cut(s) 169, 195
HpyAV CCTTC 2 cut(s) 228, 385
HpyCH4III ACNGT 2 cut(s) 325, 424
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 3 cut(s) 42, 105, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 517
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 2 cut(s) 272, 431
Ksp22I TGATCA 1 cut(s) 31
KspAI GTTAAC 1 cut(s) 195
Kzo9I GATC 3 cut(s) 31, 206, 256
LmnI GCTCC 1 cut(s) 517
LpnPI CCDG 5 cut(s) 38, 65, 108, 135, 324
MaeI CTAG 1 cut(s) 291
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 325
MalI GATC 3 cut(s) 33, 208, 258
MboI GATC 3 cut(s) 31, 206, 256
MfeI CAATTG 1 cut(s) 368
MflI RGATCY 2 cut(s) 206, 256
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 1 cut(s) 443
MnlI CCTC 4 cut(s) 151, 154, 226, 436
MseI TTAA 6 cut(s) 75, 194, 240, 302, 381, 528
MspR9I CCNGG 2 cut(s) 53, 123
MunI CAATTG 1 cut(s) 368
MvaI CCWGG 2 cut(s) 53, 123
MwoI GCNNNNNNNGC 1 cut(s) 517
NcoI CCATGG 1 cut(s) 268
NdeII GATC 3 cut(s) 31, 206, 256
NlaIII CATG 2 cut(s) 272, 431
NlaIV GGNNCC 2 cut(s) 258, 519
NspI RCATGY 1 cut(s) 431
PfeI GAWTC 2 cut(s) 8, 297
PfoI TCCNGGA 1 cut(s) 51
PleI GAGTC 1 cut(s) 473
PpsI GAGTC 1 cut(s) 473
Psp6I CCWGG 2 cut(s) 51, 121
PspGI CCWGG 2 cut(s) 51, 121
PspN4I GGNNCC 2 cut(s) 258, 519
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 2 cut(s) 206, 256
RsaI GTAC 2 cut(s) 170, 396
RsaNI GTAC 2 cut(s) 169, 395
SaqAI TTAA 6 cut(s) 75, 194, 240, 302, 381, 528
Sau3AI GATC 3 cut(s) 31, 206, 256
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 2 cut(s) 53, 123
SetI ASST 4 cut(s) 134, 179, 190, 396
SfcI CTRYAG 1 cut(s) 172
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 51, 121
StyI CCWWGG 3 cut(s) 14, 228, 268
TaaI ACNGT 2 cut(s) 325, 424
TaiI ACGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 221
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 2 cut(s) 8, 297
Tru1I TTAA 6 cut(s) 75, 194, 240, 302, 381, 528
Tru9I TTAA 6 cut(s) 75, 194, 240, 302, 381, 528
TscAI CASTG 1 cut(s) 409
TspRI CASTG 1 cut(s) 409
XagI CCTNNNNNAGG 1 cut(s) 18
XapI RAATTY 1 cut(s) 243
XceI RCATGY 1 cut(s) 431
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.